Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010484

Physical Location & Seq

Genomic Coordinates Reverse (-)

64551321 .. 64553580

Gene Structure 2260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG477000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAGAAGAAGCAAAGCAAACCAATGGAGTTGTTAAACGAGATGGTATCAGAGCCCTACCATCTCCTCCATTTCTTGGCCTTCTTCTCTTACTTTGTAATTCGCACTTGCGCTGCCCAAGTCCTCTCTCCCCAAATCACCTCCCGTCTCTTTCTCCGAGAAATCCAAGCCGCTTTGGCCTTGGGTCTCTTCGCTGCCATCAAGGTTGTGAGGGAAGAAAACTGGGAGGCTTTTATTTCAGATACTCTCTTCTTTGCAAAGATTTTTCTTCTTGCCCTTACTTTGATAATGGATTACCACTTGACTCTCTGGTACACAGTGATATTTGCAGGGATATATATTTTCACACAACAGCCGGCCTTTAAAAAATTAGGTACTTCCAGTAAAATAACACCATTGCAGCTGGAAAGCTTGCTGACCGAAGGGAGCACATCGAGACTTTGGCTGGTTGAATTTCGTGCTGCATATTCACCTTCTTGCATACGCTCAAGTCGGTGCTTTCCTGAGCTTTCAATCACATATTCAAACAAAAGCTTTTCTTTTGGAATAGTTAACCTTGGCCTCTTCCCAAATGCTGCAGAGTTTTTTGGAATATCACTCTCTGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

203

Amino Acids

23.07

Weight (kDa)

8.76

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11640 AT5G11640
fragaria_vesca	FvH4_2g35350 FvH4_2g35350
malus_domestica	MD08G1113000.v1.1 MD15G1092400.v1.1
prunus_persica	Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1
pyrus_communis	pycom08g09370 pycom08g09380 pycom110g00040 pycom110g00050
rosa_chinensis	RchiOBHm_Chr6g0306561
rosa_laevigata	RLG00000010785
rosa_samantha	Rh6AG462800 Rh6BG438000 Rh6CG477000 Rh6DG463600
rosa_wichuraiana	Rw6G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	76
AciI	CCGC	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	452
AfaI	GTAC	2 cut(s)	314, 376
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	3 cut(s)	452, 513, 525
AluBI	AGCT	4 cut(s)	403, 411, 508, 534
AluI	AGCT	4 cut(s)	403, 411, 508, 534
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	3 cut(s)	152, 191, 430
AoxI	GGCC	4 cut(s)	78, 177, 357, 559
ApeKI	GCWGC	5 cut(s)	113, 194, 400, 461, 575
ApoI	RAATTY	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	130, 462
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	5 cut(s)	100, 181, 412, 448, 562
BccI	CCATC	3 cut(s)	37, 69, 206
BcoDI	GTCTC	3 cut(s)	152, 191, 430
BfmI	CTRYAG	1 cut(s)	576
BglI	GCCNNNNNGGC	1 cut(s)	176
BisI	GCNGC	6 cut(s)	114, 171, 195, 401, 462, 576
BlsI	GCNGC	6 cut(s)	115, 172, 196, 402, 463, 577
BmrI	ACTGGG	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	232
Bpu10I	CCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	472
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	180, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	355
Bse1I	ACTGG	2 cut(s)	227, 381
Bse3DI	GCAATG	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	180, 556
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	2 cut(s)	227, 381
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	5 cut(s)	100, 181, 412, 448, 562
BshFI	GGCC	4 cut(s)	80, 179, 359, 561
BsiHKAI	GWGCWC	1 cut(s)	431
BsiSI	CCGG	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	3 cut(s)	152, 191, 430
BsmBI	CGTCTC	1 cut(s)	152
BsnI	GGCC	4 cut(s)	80, 179, 359, 561
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	2 cut(s)	57, 431
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	4 cut(s)	80, 179, 359, 561
BspCNI	CTCAG	1 cut(s)	496
BspMAI	CTGCAG	1 cut(s)	580
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	355
BsrI	ACTGG	2 cut(s)	227, 381
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	180, 556
BssT1I	CCWWGG	2 cut(s)	180, 556
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	3 cut(s)	194, 254, 569
BstC8I	GCNNGC	2 cut(s)	357, 413
BstDEI	CTNAG	1 cut(s)	504
BstHHI	GCGC	1 cut(s)	113
BstMAI	GTCTC	3 cut(s)	152, 191, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstSFI	CTRYAG	1 cut(s)	576
BstV1I	GCAGC	5 cut(s)	100, 181, 412, 448, 562
BsuRI	GGCC	4 cut(s)	80, 179, 359, 561
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	357, 413
CfoI	GCGC	1 cut(s)	113
Cfr10I	RCCGGY	1 cut(s)	355
Csp6I	GTAC	2 cut(s)	313, 375
CviQI	GTAC	2 cut(s)	313, 375
DdeI	CTNAG	1 cut(s)	504
DraI	TTTAAA	1 cut(s)	364
Eam1104I	CTCTTC	3 cut(s)	194, 254, 569
EarI	CTCTTC	3 cut(s)	194, 254, 569
Eco130I	CCWWGG	2 cut(s)	180, 556
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	191
EcoT14I	CCWWGG	2 cut(s)	180, 556
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	2 cut(s)	180, 556
Esp3I	CGTCTC	1 cut(s)	152
FaiI	YATR	5 cut(s)	337, 339, 466, 482, 520
FalI	AAGNNNNNCTT	2 cut(s)	523, 555
Fnu4HI	GCNGC	6 cut(s)	114, 171, 195, 401, 462, 576
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	6 cut(s)	114, 171, 195, 401, 462, 576
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	6 cut(s)	114, 171, 195, 401, 462, 576
HaeIII	GGCC	4 cut(s)	80, 179, 359, 561
HapII	CCGG	1 cut(s)	356
HhaI	GCGC	1 cut(s)	113
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	2 cut(s)	409, 532
HinfI	GANTC	1 cut(s)	304
HpaI	GTTAAC	1 cut(s)	553
HpaII	CCGG	1 cut(s)	356
HphI	GGTGA	2 cut(s)	130, 462
Hpy166II	GTNNAC	2 cut(s)	315, 553
Hpy188I	TCNGA	3 cut(s)	52, 158, 241
Hpy188III	TCNNGA	2 cut(s)	435, 503
Hpy8I	GTNNAC	2 cut(s)	315, 553
HpyAV	CCTTC	3 cut(s)	91, 416, 483
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	6 cut(s)	257, 329, 400, 464, 480, 578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	504
HspAI	GCGC	1 cut(s)	111
KroI	GCCGGC	1 cut(s)	355
KroNI	GCCGGC	1 cut(s)	357
KspAI	GTTAAC	1 cut(s)	553
LmnI	GCTCC	1 cut(s)	426
LpnPI	CCDG	9 cut(s)	208, 295, 315, 369, 389, 394, 431, 516, 588
Lsp1109I	GCAGC	5 cut(s)	100, 181, 412, 448, 562
MboII	GAAGA	7 cut(s)	19, 76, 181, 227, 241, 260, 556
MhlI	GDGCHC	2 cut(s)	57, 431
MluCI	AATT	3 cut(s)	99, 368, 452
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	6 cut(s)	77, 134, 151, 204, 220, 572
MroNI	GCCGGC	1 cut(s)	355
MseI	TTAA	3 cut(s)	35, 363, 552
MspA1I	CMGCKG	1 cut(s)	403
MspI	CCGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	1 cut(s)	176
NaeI	GCCGGC	1 cut(s)	357
NgoMIV	GCCGGC	1 cut(s)	355
PdiI	GCCGGC	1 cut(s)	357
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	6 cut(s)	115, 172, 196, 402, 463, 577
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	580
PvuII	CAGCTG	1 cut(s)	403
RsaI	GTAC	2 cut(s)	314, 376
RsaNI	GTAC	2 cut(s)	313, 375
SaqAI	TTAA	3 cut(s)	35, 363, 552
SatI	GCNGC	6 cut(s)	114, 171, 195, 401, 462, 576
SchI	GAGTC	1 cut(s)	298
SduI	GDGCHC	2 cut(s)	57, 431
SetI	ASST	9 cut(s)	143, 207, 376, 405, 413, 475, 510, 536, 558
SfcI	CTRYAG	1 cut(s)	576
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
Sse9I	AATT	3 cut(s)	99, 368, 452
SsiI	CCGC	1 cut(s)	171
StyI	CCWWGG	2 cut(s)	180, 556
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	1 cut(s)	434
TaqII	GACCGA	1 cut(s)	434
TasI	AATT	3 cut(s)	99, 368, 452
TauI	GCSGC	1 cut(s)	173
Tru1I	TTAA	3 cut(s)	35, 363, 552
Tru9I	TTAA	3 cut(s)	35, 363, 552
TscAI	CASTG	1 cut(s)	324
TseI	GCWGC	5 cut(s)	113, 194, 400, 461, 575
TspRI	CASTG	1 cut(s)	324
Van91I	CCANNNNNTGG	1 cut(s)	76
XapI	RAATTY	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.