Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010484

Physical Location & Seq

Genomic Coordinates Reverse (-)

6425522 .. 6428309

Gene Structure 2788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1092400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGGCTTGGGTTTAATGAGGCCTTTACCTGGACCAAGCTCCTCCAATCCAATAGAGGCCCATATACGCTGGGAGAAGTGCGAAGAAAAGCGTTGTGAATTGCGATGGAGCACTGAAACCTCAGACCTTGATCGGAGTCAGATCGAGCACGAAATCAGAGAGAGAGAGGGGGGCAAAGCAATGGAGAAGAAGCAGAGCAAACCAATGGAGCTGTTAAACACGATGGTATCAGAGCCATACTATCTGCTCCATTTCTTGGCTTTTTTCTCCTACCTCGTCATCCGTACCTCCGCCTCCCACGTCCTCTCCGCCCACATCACCGATCACCTCCTCCACCGAGAAATTCAAGCAGCTTTGACATTTGGGCTCTTGACTGCAATCAAGATGGTGAGGGAAGAAACTTGGGAAGGATTTATTGCTGATTCACTCTTTTTTGCTAAGATTTTTCTTATCGGTCTCACTTTAATTCTGGACCGCCACTTGACTCTCTGGTACGTTGTGGTGTTTACAGTGATATATATTTTCACACAACAACCTGCCTTTCAAAAATTAGGTACTTCTAGTAAATTGACACCGTTGCAGTTAGAAAGCTTGCTGACTGAAGGGAGCACATCGAAACATTGGCTGATTGAATTTCGTGCCTTTTACTCTCCTGCTTGCATCCGCACAAGTCGGTGCTTTCCTGAGCTTTCAATTACATATTCCAACAAAAATTTCTCTTTTGGAATAGTTGATCTCGGACTCTTCCCAAATGCTGCAGAGTATTTTGGAATATCCCTTTCTGGGAGCATGGGCCAACTTCCTACCTATGTCTTATTCACGAATGGAGCTGAAGTTGCACGCTATCCACAACTAGAATCTCAAGCAAAAGCATTTCGTGATCCCATAACTAAGAGATTTCTTTCGGGGTACTTTAAGCTCGACAGGCACCTTCTTGAGTATATAAACGGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

319

Amino Acids

36.46

Weight (kDa)

7.72

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11640 AT5G11640
fragaria_vesca	FvH4_2g35350 FvH4_2g35350
malus_domestica	MD08G1113000.v1.1 MD15G1092400.v1.1
prunus_persica	Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1
pyrus_communis	pycom08g09370 pycom08g09380 pycom110g00040 pycom110g00050
rosa_chinensis	RchiOBHm_Chr6g0306561
rosa_laevigata	RLG00000010785
rosa_samantha	Rh6AG462800 Rh6BG438000 Rh6CG477000 Rh6DG463600
rosa_wichuraiana	Rw6G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	544
AccB1I	GGYRCC	1 cut(s)	927
AccB7I	CCANNNNNTGG	1 cut(s)	256
AciI	CCGC	4 cut(s)	291, 309, 475, 664
AclWI	GGATC	1 cut(s)	875
AcsI	RAATTY	3 cut(s)	342, 632, 712
AcuI	CTGAAG	2 cut(s)	621, 852
AfaI	GTAC	4 cut(s)	286, 494, 556, 911
AfiI	CCNNNNNNNGG	3 cut(s)	29, 256, 783
AgsI	TTSAA	4 cut(s)	347, 545, 632, 693
AjiI	CACGTC	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	28
AjuI	GAANNNNNNNTTGG	2 cut(s)	698, 730
AluBI	AGCT	7 cut(s)	39, 211, 353, 591, 688, 830, 919
AluI	AGCT	7 cut(s)	39, 211, 353, 591, 688, 830, 919
Alw21I	GWGCWC	3 cut(s)	113, 150, 611
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	1 cut(s)	875
AoxI	GGCC	3 cut(s)	20, 57, 793
ApeKI	GCWGC	2 cut(s)	350, 755
ApoI	RAATTY	3 cut(s)	342, 632, 712
AspS9I	GGNCC	4 cut(s)	32, 58, 472, 793
AsuHPI	GGTGA	3 cut(s)	310, 317, 400
AvaII	GGWCC	2 cut(s)	32, 472
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BanI	GGYRCC	1 cut(s)	927
BanII	GRGCYC	1 cut(s)	369
Bbv12I	GWGCWC	3 cut(s)	113, 150, 611
BbvI	GCAGC	2 cut(s)	362, 742
BccI	CCATC	3 cut(s)	99, 217, 379
BciT130I	CCWGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	461
BfaI	CTAG	2 cut(s)	561, 854
BfmI	CTRYAG	1 cut(s)	756
BfuAI	ACCTGC	1 cut(s)	544
BisI	GCNGC	2 cut(s)	351, 756
BlsI	GCNGC	2 cut(s)	352, 757
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	2 cut(s)	32, 472
BmgBI	CACGTC	1 cut(s)	301
BmgT120I	GGNCC	4 cut(s)	32, 58, 472, 793
BmiI	GGNNCC	1 cut(s)	929
BmrFI	CCNGG	1 cut(s)	30
BmsI	GCATC	1 cut(s)	669
Bpu10I	CCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	2 cut(s)	846, 956
BsaI	GGTCTC	1 cut(s)	461
BsaXI	ACNNNNNCTCC	4 cut(s)	290, 320, 819, 849
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 256, 783
Bse3DI	GCAATG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	279, 660
BseLI	CCNNNNNNNGG	3 cut(s)	29, 256, 783
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	135, 675
BseRI	GAGGAG	2 cut(s)	31, 320
BseXI	GCAGC	2 cut(s)	362, 742
BseYI	CCCAGC	1 cut(s)	69
BshFI	GGCC	3 cut(s)	22, 59, 795
BshNI	GGYRCC	1 cut(s)	927
BsiHKAI	GWGCWC	3 cut(s)	113, 150, 611
BslI	CCNNNNNNNGG	3 cut(s)	29, 256, 783
BsmAI	GTCTC	1 cut(s)	461
BsnI	GGCC	3 cut(s)	22, 59, 795
Bso31I	GGTCTC	1 cut(s)	461
Bsp1286I	GDGCHC	4 cut(s)	113, 150, 369, 611
Bsp143I	GATC	5 cut(s)	130, 141, 322, 733, 880
BspACI	CCGC	4 cut(s)	291, 309, 475, 664
BspANI	GGCC	3 cut(s)	22, 59, 795
BspCNI	CTCAG	2 cut(s)	134, 676
BspLI	GGNNCC	1 cut(s)	929
BspMAI	CTGCAG	1 cut(s)	760
BspMI	ACCTGC	1 cut(s)	544
BspPI	GGATC	1 cut(s)	875
BspT107I	GGYRCC	1 cut(s)	927
BspTNI	GGTCTC	1 cut(s)	461
BsrDI	GCAATG	1 cut(s)	186
BssMI	GATC	5 cut(s)	130, 141, 322, 733, 880
Bst2UI	CCWGG	1 cut(s)	30
Bst4CI	ACNGT	3 cut(s)	511, 576, 950
Bst6I	CTCTTC	1 cut(s)	749
BstC8I	GCNNGC	3 cut(s)	593, 658, 841
BstDEI	CTNAG	4 cut(s)	121, 438, 684, 891
BstF5I	GGATG	2 cut(s)	279, 660
BstKTI	GATC	5 cut(s)	133, 144, 325, 736, 883
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	5 cut(s)	130, 141, 322, 733, 880
BstMWI	GCNNNNNNNGC	2 cut(s)	836, 925
BstNI	CCWGG	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	28
BstSFI	CTRYAG	1 cut(s)	756
BstV1I	GCAGC	2 cut(s)	362, 742
BsuRI	GGCC	3 cut(s)	22, 59, 795
BtgZI	GCGATG	1 cut(s)	118
BtrI	CACGTC	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	279, 660
BtsIMutI	CAGTG	2 cut(s)	111, 516
BveI	ACCTGC	1 cut(s)	544
Cac8I	GCNNGC	3 cut(s)	593, 658, 841
Cfr13I	GGNCC	4 cut(s)	32, 58, 472, 793
Csp6I	GTAC	4 cut(s)	285, 493, 555, 910
CviAII	CATG	1 cut(s)	790
CviQI	GTAC	4 cut(s)	285, 493, 555, 910
DdeI	CTNAG	4 cut(s)	121, 438, 684, 891
DpnI	GATC	5 cut(s)	132, 143, 324, 735, 882
DpnII	GATC	5 cut(s)	130, 141, 322, 733, 880
Eam1104I	CTCTTC	1 cut(s)	749
EarI	CTCTTC	1 cut(s)	749
EciI	GGCGGA	2 cut(s)	280, 298
Eco147I	AGGCCT	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	461
Eco47I	GGWCC	2 cut(s)	32, 472
Eco57I	CTGAAG	2 cut(s)	621, 852
EcoRII	CCWGG	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	369
FaeI	CATG	1 cut(s)	793
FatI	CATG	1 cut(s)	789
Fnu4HI	GCNGC	2 cut(s)	351, 756
FokI	GGATG	2 cut(s)	266, 647
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	2 cut(s)	351, 756
FspBI	CTAG	2 cut(s)	561, 854
GluI	GCNGC	2 cut(s)	351, 756
GsaI	CCCAGC	1 cut(s)	73
HaeIII	GGCC	3 cut(s)	22, 59, 795
Hin1II	CATG	1 cut(s)	793
HindIII	AAGCTT	1 cut(s)	589
HinfI	GANTC	5 cut(s)	136, 422, 484, 741, 857
HphI	GGTGA	3 cut(s)	310, 317, 400
Hpy166II	GTNNAC	1 cut(s)	507
Hpy188I	TCNGA	6 cut(s)	124, 135, 141, 158, 232, 740
Hpy188III	TCNNGA	7 cut(s)	370, 382, 470, 683, 820, 878, 935
Hpy8I	GTNNAC	1 cut(s)	507
HpyAV	CCTTC	3 cut(s)	401, 596, 941
HpyCH4III	ACNGT	3 cut(s)	511, 576, 950
HpyCH4IV	ACGT	2 cut(s)	300, 495
HpyCH4V	TGCA	5 cut(s)	377, 580, 660, 758, 839
HpyF10VI	GCNNNNNNNGC	2 cut(s)	836, 925
HpyF3I	CTNAG	4 cut(s)	121, 438, 684, 891
HpySE526I	ACGT	2 cut(s)	300, 495
Hsp92II	CATG	1 cut(s)	793
Kzo9I	GATC	5 cut(s)	130, 141, 322, 733, 880
LmnI	GCTCC	7 cut(s)	44, 108, 208, 252, 606, 786, 827
Lsp1109I	GCAGC	2 cut(s)	362, 742
LweI	GCATC	1 cut(s)	669
MaeI	CTAG	2 cut(s)	561, 854
MaeII	ACGT	2 cut(s)	300, 495
MalI	GATC	5 cut(s)	132, 143, 324, 735, 882
MboI	GATC	5 cut(s)	130, 141, 322, 733, 880
MboII	GAAGA	4 cut(s)	95, 199, 407, 736
MhlI	GDGCHC	4 cut(s)	113, 150, 369, 611
MluCI	AATT	8 cut(s)	98, 342, 465, 548, 566, 632, 693, 712
MlyI	GAGTC	3 cut(s)	145, 478, 735
MmeI	TCCRAC	1 cut(s)	729
MseI	TTAA	4 cut(s)	14, 215, 464, 915
MspR9I	CCNGG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	836, 925
NdeII	GATC	5 cut(s)	130, 141, 322, 733, 880
NlaIII	CATG	1 cut(s)	793
NlaIV	GGNNCC	1 cut(s)	929
PceI	AGGCCT	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	422, 857
PflMI	CCANNNNNTGG	1 cut(s)	256
PkrI	GCNGC	2 cut(s)	352, 757
PleI	GAGTC	3 cut(s)	144, 478, 735
PpsI	GAGTC	3 cut(s)	144, 478, 735
Psp6I	CCWGG	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	28
PspN4I	GGNNCC	1 cut(s)	929
PspPI	GGNCC	4 cut(s)	32, 58, 472, 793
PstI	CTGCAG	1 cut(s)	760
RsaI	GTAC	4 cut(s)	286, 494, 556, 911
RsaNI	GTAC	4 cut(s)	285, 493, 555, 910
SaqAI	TTAA	4 cut(s)	14, 215, 464, 915
SatI	GCNGC	2 cut(s)	351, 756
Sau3AI	GATC	5 cut(s)	130, 141, 322, 733, 880
Sau96I	GGNCC	4 cut(s)	32, 58, 472, 793
SchI	GAGTC	3 cut(s)	145, 478, 735
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	4 cut(s)	113, 150, 369, 611
SfaNI	GCATC	1 cut(s)	669
SfcI	CTRYAG	1 cut(s)	756
SinI	GGWCC	2 cut(s)	32, 472
SmlI	CTYRAG	2 cut(s)	861, 935
SmoI	CTYRAG	2 cut(s)	861, 935
Sse9I	AATT	8 cut(s)	98, 342, 465, 548, 566, 632, 693, 712
SseBI	AGGCCT	1 cut(s)	22
SsiI	CCGC	4 cut(s)	291, 309, 475, 664
SspMI	CTAG	2 cut(s)	561, 854
StuI	AGGCCT	1 cut(s)	22
StyD4I	CCNGG	1 cut(s)	28
TaaI	ACNGT	3 cut(s)	511, 576, 950
TaiI	ACGT	2 cut(s)	303, 498
TaqI	TCGA	3 cut(s)	144, 614, 921
TaqII	GACCGA	1 cut(s)	443
TasI	AATT	8 cut(s)	98, 342, 465, 548, 566, 632, 693, 712
TfiI	GAWTC	2 cut(s)	422, 857
Tru1I	TTAA	4 cut(s)	14, 215, 464, 915
Tru9I	TTAA	4 cut(s)	14, 215, 464, 915
TscAI	CASTG	2 cut(s)	118, 516
TseI	GCWGC	2 cut(s)	350, 755
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	2 cut(s)	118, 516
Van91I	CCANNNNNTGG	1 cut(s)	256
VpaK11BI	GGWCC	2 cut(s)	32, 472
XapI	RAATTY	3 cut(s)	342, 632, 712
XspI	CTAG	2 cut(s)	561, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.