Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010484

Physical Location & Seq

Genomic Coordinates Forward (+)

26082581 .. 26084835

Gene Structure 2255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35350.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAGAAGAAGCAGAGCAAAGCAATGGAGTTGTTAAACGAGATGGTATCAGAGCCATACCATCTCCTCCATTTCTTGGCTTTCTTCTCTTACTTTGTAATCCGCACTTCCGCTGCTCAAATCCTCTCTCCCCATATCACCTCCCGTCTCTTTCTCCGAGAAATCCAAGCCGCTTTGGCCTTGGGCGTCTTCGCTGCCATCAAGATAGTGAGGGAAGAAACCTGGGAGGGTTTTATTTCAGATACGCTCTTCTTTGCGAAGATTTTTCTTCTTGCACTTACTTTGATAATGGATTACCACTTGACTCTCTGGTACGCAGTGATATTTGCAGGGATTTATATTTTCACACAACAGCCGGCCTTTAAGAAATTAGGTACTTCAAGTAAGATAACACCATTGCAGCTGGAAAGCTTGCTGACGGAAGGGAGCACATCTAGACTTTGGCTGGTTGAATTTCGTGCTGCGTATTCACCTTCTTGCATACGCTCAAGTCGGTGCTTTCCTGAGCTTTCTATCACATATTCAAACAAAGGCTTTTCTTTTGGAATAGTTGACCTTGGCCTCTTCCCAAATGCTGCACAGTATTTCGGAATATCACTCTCTGGCAGCATGGGACAACTTCCTGCATACATATTATTCTCACATGGATCTGAAGTTGCTCGCTATCCTGAGTTGGTTGCTGAATCAAAAGGTTCTCGTTCTCCCATAACTAAGAGATTTCTTTCACAGTACTTCAAGCTCGACCTGCTCCTTCTCGAGTACATAAATGGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

259

Amino Acids

29.2

Weight (kDa)

8.95

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010484)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11640 AT5G11640
fragaria_vesca	FvH4_2g35350 FvH4_2g35350
malus_domestica	MD08G1113000.v1.1 MD15G1092400.v1.1
prunus_persica	Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1 Prupe.1G447200_v2.0.a1
pyrus_communis	pycom08g09370 pycom08g09380 pycom110g00040 pycom110g00050
rosa_chinensis	RchiOBHm_Chr6g0306561
rosa_laevigata	RLG00000010785
rosa_samantha	Rh6AG462800 Rh6BG438000 Rh6CG477000 Rh6DG463600
rosa_wichuraiana	Rw6G040330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	753
AccB7I	CCANNNNNTGG	1 cut(s)	76
AciI	CCGC	3 cut(s)	103, 111, 171
AclWI	GGATC	1 cut(s)	655
AcsI	RAATTY	1 cut(s)	452
AcuI	CTGAAG	1 cut(s)	672
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	4 cut(s)	314, 376, 731, 761
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	4 cut(s)	381, 452, 525, 736
AjnI	CCWGG	1 cut(s)	221
AluBI	AGCT	4 cut(s)	403, 411, 508, 739
AluI	AGCT	4 cut(s)	403, 411, 508, 739
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	655
Ama87I	CYCGRG	1 cut(s)	755
AoxI	GGCC	3 cut(s)	177, 357, 559
ApeKI	GCWGC	6 cut(s)	113, 194, 400, 461, 575, 606
ApoI	RAATTY	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	130, 462
AvaI	CYCGRG	1 cut(s)	755
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	6 cut(s)	100, 181, 412, 448, 562, 618
BccI	CCATC	3 cut(s)	37, 69, 206
BciT130I	CCWGG	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	1 cut(s)	435
BfuAI	ACCTGC	1 cut(s)	753
BglI	GCCNNNNNGGC	1 cut(s)	176
BisI	GCNGC	7 cut(s)	114, 171, 195, 401, 462, 576, 607
BlsI	GCNGC	7 cut(s)	115, 172, 196, 402, 463, 577, 608
BmcAI	AGTACT	1 cut(s)	731
Bme1390I	CCNGG	1 cut(s)	223
BmeT110I	CYCGRG	1 cut(s)	755
BmrFI	CCNGG	1 cut(s)	223
BpiI	GAAGAC	1 cut(s)	181
Bpu10I	CCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	472
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	180, 222, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	355
Bse3DI	GCAATG	2 cut(s)	30, 395
BseBI	CCWGG	1 cut(s)	223
BseDI	CCNNGG	3 cut(s)	180, 222, 556
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	2 cut(s)	30, 395
BseMII	CTCAG	2 cut(s)	495, 660
BseRI	GAGGAG	1 cut(s)	56
BseXI	GCAGC	6 cut(s)	100, 181, 412, 448, 562, 618
BsgI	GTGCAG	1 cut(s)	561
BshFI	GGCC	3 cut(s)	179, 359, 561
BsiHKAI	GWGCWC	1 cut(s)	431
BsiHKCI	CYCGRG	1 cut(s)	755
BsiSI	CCGG	1 cut(s)	356
BslFI	GGGAC	1 cut(s)	627
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	1 cut(s)	152
BsmBI	CGTCTC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	627
BsnI	GGCC	3 cut(s)	179, 359, 561
BsoBI	CYCGRG	1 cut(s)	755
Bsp1286I	GDGCHC	1 cut(s)	431
Bsp143I	GATC	1 cut(s)	647
BspACI	CCGC	3 cut(s)	103, 111, 171
BspANI	GGCC	3 cut(s)	179, 359, 561
BspCNI	CTCAG	2 cut(s)	496, 661
BspMI	ACCTGC	1 cut(s)	753
BspPI	GGATC	1 cut(s)	655
BspQI	GCTCTTC	1 cut(s)	254
BsrDI	GCAATG	2 cut(s)	30, 395
BsrFI	RCCGGY	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	3 cut(s)	180, 222, 556
BssMI	GATC	1 cut(s)	647
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	2 cut(s)	180, 556
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	2 cut(s)	582, 729
Bst6I	CTCTTC	2 cut(s)	254, 569
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	3 cut(s)	357, 413, 661
BstDEI	CTNAG	3 cut(s)	504, 669, 711
BstKTI	GATC	1 cut(s)	650
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	1 cut(s)	647
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 745
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	221
BstV1I	GCAGC	6 cut(s)	100, 181, 412, 448, 562, 618
BstV2I	GAAGAC	1 cut(s)	181
BstX2I	RGATCY	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	647
BsuRI	GGCC	3 cut(s)	179, 359, 561
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	753
Cac8I	GCNNGC	3 cut(s)	357, 413, 661
Cfr10I	RCCGGY	1 cut(s)	355
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	4 cut(s)	313, 375, 730, 760
CviAII	CATG	2 cut(s)	610, 644
CviQI	GTAC	4 cut(s)	313, 375, 730, 760
DdeI	CTNAG	3 cut(s)	504, 669, 711
DpnI	GATC	1 cut(s)	649
DpnII	GATC	1 cut(s)	647
Eam1104I	CTCTTC	2 cut(s)	254, 569
EarI	CTCTTC	2 cut(s)	254, 569
Eco130I	CCWWGG	2 cut(s)	180, 556
Eco57I	CTGAAG	1 cut(s)	672
Eco88I	CYCGRG	1 cut(s)	755
EcoRII	CCWGG	1 cut(s)	221
EcoT14I	CCWWGG	2 cut(s)	180, 556
ErhI	CCWWGG	2 cut(s)	180, 556
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	2 cut(s)	613, 647
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	2 cut(s)	609, 643
Fnu4HI	GCNGC	7 cut(s)	114, 171, 195, 401, 462, 576, 607
Fsp4HI	GCNGC	7 cut(s)	114, 171, 195, 401, 462, 576, 607
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	7 cut(s)	114, 171, 195, 401, 462, 576, 607
HaeIII	GGCC	3 cut(s)	179, 359, 561
HapII	CCGG	1 cut(s)	356
HgaI	GACGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	613, 647
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	1 cut(s)	409
HinfI	GANTC	2 cut(s)	304, 683
HpaII	CCGG	1 cut(s)	356
HphI	GGTGA	2 cut(s)	130, 462
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	5 cut(s)	52, 158, 241, 590, 652
Hpy188III	TCNNGA	5 cut(s)	202, 435, 503, 668, 755
Hpy8I	GTNNAC	1 cut(s)	553
HpyAV	CCTTC	3 cut(s)	416, 483, 761
HpyCH4III	ACNGT	2 cut(s)	582, 729
HpyCH4V	TGCA	6 cut(s)	275, 329, 400, 480, 578, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 745
HpyF3I	CTNAG	3 cut(s)	504, 669, 711
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	613, 647
KroI	GCCGGC	1 cut(s)	355
KroNI	GCCGGC	1 cut(s)	357
Kzo9I	GATC	1 cut(s)	647
LguI	GCTCTTC	1 cut(s)	254
LmnI	GCTCC	2 cut(s)	426, 753
Lsp1109I	GCAGC	6 cut(s)	100, 181, 412, 448, 562, 618
MaeI	CTAG	1 cut(s)	435
MalI	GATC	1 cut(s)	649
MboI	GATC	1 cut(s)	647
MboII	GAAGA	8 cut(s)	19, 76, 181, 227, 241, 260, 271, 556
MflI	RGATCY	1 cut(s)	647
MhlI	GDGCHC	1 cut(s)	431
MluCI	AATT	2 cut(s)	368, 452
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	6 cut(s)	77, 134, 151, 204, 220, 572
MroNI	GCCGGC	1 cut(s)	355
MseI	TTAA	2 cut(s)	35, 363
MspA1I	CMGCKG	2 cut(s)	113, 403
MspI	CCGG	1 cut(s)	356
MspR9I	CCNGG	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	176, 745
NaeI	GCCGGC	1 cut(s)	357
NdeII	GATC	1 cut(s)	647
NgoMIV	GCCGGC	1 cut(s)	355
NlaIII	CATG	2 cut(s)	613, 647
PaeR7I	CTCGAG	1 cut(s)	755
PciSI	GCTCTTC	1 cut(s)	254
PdiI	GCCGGC	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	683
PflMI	CCANNNNNTGG	1 cut(s)	76
PkrI	GCNGC	7 cut(s)	115, 172, 196, 402, 463, 577, 608
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	647
PvuII	CAGCTG	1 cut(s)	403
RsaI	GTAC	4 cut(s)	314, 376, 731, 761
RsaNI	GTAC	4 cut(s)	313, 375, 730, 760
SapI	GCTCTTC	1 cut(s)	254
SaqAI	TTAA	2 cut(s)	35, 363
SatI	GCNGC	7 cut(s)	114, 171, 195, 401, 462, 576, 607
Sau3AI	GATC	1 cut(s)	647
ScaI	AGTACT	1 cut(s)	731
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	1 cut(s)	431
Sfr274I	CTCGAG	1 cut(s)	755
SlaI	CTCGAG	1 cut(s)	755
SmlI	CTYRAG	2 cut(s)	487, 755
SmoI	CTYRAG	2 cut(s)	487, 755
Sse9I	AATT	2 cut(s)	368, 452
SsiI	CCGC	3 cut(s)	103, 111, 171
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	221
StyI	CCWWGG	2 cut(s)	180, 556
TaaI	ACNGT	2 cut(s)	582, 729
TaqI	TCGA	2 cut(s)	741, 756
TasI	AATT	2 cut(s)	368, 452
TatI	WGTACW	2 cut(s)	729, 759
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	683
Tru1I	TTAA	2 cut(s)	35, 363
Tru9I	TTAA	2 cut(s)	35, 363
TscAI	CASTG	1 cut(s)	324
TseI	GCWGC	6 cut(s)	113, 194, 400, 461, 575, 606
TspGWI	ACGGA	1 cut(s)	434
TspRI	CASTG	1 cut(s)	324
Van91I	CCANNNNNTGG	1 cut(s)	76
XapI	RAATTY	1 cut(s)	452
XbaI	TCTAGA	1 cut(s)	434
XhoI	CTCGAG	1 cut(s)	755
XspI	CTAG	1 cut(s)	435
ZrmI	AGTACT	1 cut(s)	731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.