AT5G12860

Sodium:sulfate symporter transmembrane region

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
4059579 .. 4062289
2711 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G12860.2

Sequence Viewer

Length: 1674 bp
ATGGCGTCTCTCGCTCTCTCCGGCTCCTGCTCTCTCGCTTTCCCTCTCAAATCTCGATCTCTCTCTCTCCCTCGTCCTCCTTCTTCCTCTCTCAATTTGACGAAACCTCTCCGATCTCTCGATTCTCGCTTCTCCTTACTCAAATCTCCACTTCCCGTCTCTTTACGCCGGAGATCATCAACTCTCGTTAAAGCCTCTTCCACCGTCGCTTCAGCTTCCTCTTCTCCAACTCCTCCTTTGGTTCCAGCTCCGGTTCCATGGCAAGGAGCTGCCATTAAGCCTCTTCTCGCTTCGATCGCTACTGGTTTGATTCTATGGTTCGTTCCAGTCCCCGAAGGTGTCACTCGCAACGCGTGGCAATTACTCGCGATCTTCCTCGCCACCATCGTCGGGATCATCACTCAGCCGCTTCCTCTCGGTGCTGTTGCTCTAATGGGATTAGGAGCTTCCGTTCTCACCAAAACCCTAACGTTCGCCGCCGCGTTCTCCGCTTTCGGAGATCCAATCCCGTGGCTCATCGCTCTTGCCTTCTTCTTCGCTCGCGGTTTCATCAAAACCGGTCTCGGTAACCGTGTAGCTTACCAGTTCGTTAGACTCTTCGGTAGCTCCTCCCTTGGTCTCGGTTACAGTCTCGTCTTCAGTGAAGCTCTTTTAGCTCCGGCGATTCCTTCTGTCTCGGCTCGTGCCGGTGGAATCTTTCTCCCGTTGGTGAAATCTCTCTGTGTTGCTTGTGGGAGTAACGTTGGGGATGGAACAGAGCACCGTCTTGGCTCGTGGTTGATGCTTACTTGTTTCCAGACTTCTGTGATCTCTTCTTCTATGTTCTTGACGGCTATGGCTGCGAATCCTTTGAGTGCTAATTTGGCGTTTAACACGATTAAGCAGACGATTGGATGGACTGATTGGGCTAAAGCTGCGATTGTACCAGGACTTGTGTCTTTGATTGTTGTTCCGTTTCTTTTGTATCTCATCTATCCTCCTACGGTGAAGAGCAGTCCTGATGCTCCTAAGCTGGCTCAGGAAAAGCTTGACAAGATGGGACCTATGTCTAAGAACGAATTGATTATGGCTGCCACTTTATTCCTCACGGTTGGTCTCTGGATCTTTGGAGCTAAGTTGGGTGTAGATGCTGTGACTGCAGCCATTCTTGGATTATCAGTCCTTCTTGTGACAGGTGTTGTGACATGGAAAGAGTGCTTAGCTGAGTCGGTCGCATGGGACACACTCACCTGGTTCGCTGCTCTCATTGCGATGGCTGGTTATCTTAACAAATATGGTCTCATTGAGTGGTTCAGCCAGACCGTAGTCAAGTTTGTGGGAGGATTGGGTTTGTCATGGCAGCTATCTTTTGGAATCCTCGTCCTCTTGTATTTCTACACTCACTACTTCTTTGCTAGTGGAGCTGCCCACATTGGTGCTATGTTCACTGCCTTTTTATCGGTTTCAACCGCTCTAGGCACTCCACCTTACTTTGCAGCCTTGGTTCTTGCGTTCCTTTCCAACCTGATGGGAGGATTGACCCATTATGGTATCGGGTCTGCGCCTATCTTCTACGGAGCTAACTACGTGCCGCTGGCTAAATGGTGGGGCTATGGATTCCTGATTTCAATAGTCAACATTCTCATCTGGCTTGGTGTAGGTGGTGCCTGGTGGAAGTTCATTGGCTTGTGGTGA

Protein Analysis

557

Amino Acids

59.21

Weight (kDa)

9.75

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_sulph_symp PF00939 93 - 555 4.1e-148 Sodium:sulfate symporter transmembrane region
CitMHS PF03600 130 - 446 9.8e-20 Citrate transporter
CitMHS PF03600 378 - 538 4.5e-09 Citrate transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1643
AccBSI CCGCTC 1 cut(s) 1451
AccII CGCG 4 cut(s) 353, 368, 482, 543
AciI CCGC 7 cut(s) 407, 477, 480, 489, 543, 1449, 1571
AclI AACGTT 2 cut(s) 470, 741
AclWI GGATC 3 cut(s) 401, 494, 1109
AcuI CTGAAG 2 cut(s) 195, 622
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 924
AfiI CCNNNNNNNGG 2 cut(s) 263, 390
AflIII ACRYGT 1 cut(s) 351
AgeI ACCGGT 1 cut(s) 557
AgsI TTSAA 2 cut(s) 1446, 1608
AjnI CCWGG 3 cut(s) 925, 1229, 1646
AleI CACNNNNGTG 1 cut(s) 1413
AloI GAACNNNNNNTCC 2 cut(s) 435, 467
Alw21I GWGCWC 1 cut(s) 762
Alw26I GTCTC 8 cut(s) 12, 163, 566, 623, 635, 679, 1100, 1283
AlwI GGATC 3 cut(s) 401, 494, 1109
ApeKI GCWGC 9 cut(s) 269, 839, 914, 1070, 1139, 1238, 1339, 1403, 1475
AsiGI ACCGGT 1 cut(s) 557
AspLEI GCGC 1 cut(s) 1543
AspS9I GGNCC 1 cut(s) 1040
AsuHPI GGTGA 4 cut(s) 448, 721, 997, 1219
AvaII GGWCC 1 cut(s) 1040
BanI GGYRCC 1 cut(s) 1643
BauI CACGAG 2 cut(s) 681, 772
BbsI GAAGAC 1 cut(s) 628
Bbv12I GWGCWC 1 cut(s) 762
BbvI GCAGC 9 cut(s) 256, 826, 901, 1057, 1151, 1225, 1351, 1390, 1487
BccI CCATC 6 cut(s) 392, 743, 888, 1030, 1246, 1501
BceAI ACGGC 1 cut(s) 846
BciT130I CCWGG 3 cut(s) 927, 1231, 1648
BcoDI GTCTC 8 cut(s) 12, 163, 566, 623, 635, 679, 1100, 1283
BfaI CTAG 2 cut(s) 1395, 1454
BfmI CTRYAG 1 cut(s) 1137
BlpI GCTNAGC 1 cut(s) 1198
Bme1390I CCNGG 3 cut(s) 927, 1231, 1648
Bme18I GGWCC 1 cut(s) 1040
BmgT120I GGNCC 1 cut(s) 1040
BmiI GGNNCC 5 cut(s) 25, 243, 255, 1041, 1645
BmrFI CCNGG 3 cut(s) 927, 1231, 1648
BmsI GCATC 3 cut(s) 771, 991, 1117
BoxI GACNNNNGTC 3 cut(s) 934, 1045, 1304
BpiI GAAGAC 1 cut(s) 628
Bpu10I CCTNAGC 2 cut(s) 1008, 1017
Bpu1102I GCTNAGC 1 cut(s) 1198
BsaAI YACGTR 1 cut(s) 1567
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 4 cut(s) 566, 623, 1100, 1283
BsaJI CCNNGG 4 cut(s) 257, 509, 613, 1479
BsaWI WCCGGW 2 cut(s) 250, 557
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 390
Bse118I RCCGGY 2 cut(s) 557, 686
Bse1I ACTGG 3 cut(s) 307, 326, 583
Bse3DI GCAATG 1 cut(s) 1245
BseBI CCWGG 3 cut(s) 927, 1231, 1648
BseDI CCNNGG 4 cut(s) 257, 509, 613, 1479
BseGI GGATG 2 cut(s) 754, 899
BseLI CCNNNNNNNGG 2 cut(s) 263, 390
BseMI GCAATG 1 cut(s) 1245
BseMII CTCAG 3 cut(s) 416, 1031, 1194
BseNI ACTGG 3 cut(s) 307, 326, 583
BseRI GAGGAG 2 cut(s) 222, 598
BseXI GCAGC 9 cut(s) 256, 826, 901, 1057, 1151, 1225, 1351, 1390, 1487
Bsh1236I CGCG 4 cut(s) 353, 368, 482, 543
Bsh1285I CGRYCG 2 cut(s) 297, 1212
BshNI GGYRCC 1 cut(s) 1643
BshTI ACCGGT 1 cut(s) 557
BsiEI CGRYCG 2 cut(s) 297, 1212
BsiHKAI GWGCWC 1 cut(s) 762
BsiSI CCGG 6 cut(s) 21, 169, 251, 558, 659, 687
BslFI GGGAC 3 cut(s) 314, 1053, 1232
BslI CCNNNNNNNGG 2 cut(s) 263, 390
BsmAI GTCTC 8 cut(s) 12, 163, 566, 623, 635, 679, 1100, 1283
BsmBI CGTCTC 2 cut(s) 12, 163
BsmFI GGGAC 3 cut(s) 314, 1053, 1232
Bso31I GGTCTC 4 cut(s) 566, 623, 1100, 1283
Bsp1286I GDGCHC 1 cut(s) 762
Bsp143I GATC 9 cut(s) 56, 113, 173, 294, 369, 393, 499, 807, 1101
Bsp1720I GCTNAGC 1 cut(s) 1198
Bsp19I CCATGG 1 cut(s) 257
Bsp68I TCGCGA 1 cut(s) 368
BspACI CCGC 7 cut(s) 407, 477, 480, 489, 543, 1449, 1571
BspCNI CTCAG 3 cut(s) 415, 1030, 1195
BspFNI CGCG 4 cut(s) 353, 368, 482, 543
BspLI GGNNCC 5 cut(s) 25, 243, 255, 1041, 1645
BspMAI CTGCAG 1 cut(s) 1141
BspPI GGATC 3 cut(s) 401, 494, 1109
BspQI GCTCTTC 1 cut(s) 983
BspT107I GGYRCC 1 cut(s) 1643
BspTNI GGTCTC 4 cut(s) 566, 623, 1100, 1283
BsrBI CCGCTC 1 cut(s) 1451
BsrDI GCAATG 1 cut(s) 1245
BsrFI RCCGGY 2 cut(s) 557, 686
BsrI ACTGG 3 cut(s) 307, 326, 583
BssAI RCCGGY 2 cut(s) 557, 686
BssECI CCNNGG 4 cut(s) 257, 509, 613, 1479
BssMI GATC 9 cut(s) 56, 113, 173, 294, 369, 393, 499, 807, 1101
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 2 cut(s) 681, 772
BssT1I CCWWGG 3 cut(s) 257, 613, 1479
Bst2BI CACGAG 2 cut(s) 681, 772
Bst2UI CCWGG 3 cut(s) 927, 1231, 1648
Bst4CI ACNGT 7 cut(s) 205, 572, 629, 764, 985, 1090, 1303
Bst6I CTCTTC 6 cut(s) 202, 226, 288, 602, 817, 983
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 1567
BstC8I GCNNGC 3 cut(s) 541, 1014, 1575
BstDEI CTNAG 7 cut(s) 402, 1008, 1017, 1050, 1113, 1198, 1203
BstDSI CCRYGG 2 cut(s) 257, 509
BstEII GGTNACC 1 cut(s) 566
BstF5I GGATG 2 cut(s) 754, 899
BstFNI CGCG 4 cut(s) 353, 368, 482, 543
BstHHI GCGC 1 cut(s) 1543
BstKTI GATC 9 cut(s) 59, 116, 176, 297, 372, 396, 502, 810, 1104
BstMAI GTCTC 8 cut(s) 12, 163, 566, 623, 635, 679, 1100, 1283
BstMBI GATC 9 cut(s) 56, 113, 173, 294, 369, 393, 499, 807, 1101
BstMCI CGRYCG 2 cut(s) 297, 1212
BstNI CCWGG 3 cut(s) 927, 1231, 1648
BstPAI GACNNNNGTC 3 cut(s) 934, 1045, 1304
BstPI GGTNACC 1 cut(s) 566
BstSCI CCNGG 3 cut(s) 925, 1229, 1646
BstSFI CTRYAG 1 cut(s) 1137
BstUI CGCG 4 cut(s) 353, 368, 482, 543
BstV1I GCAGC 9 cut(s) 256, 826, 901, 1057, 1151, 1225, 1351, 1390, 1487
BstV2I GAAGAC 1 cut(s) 628
BstX2I RGATCY 2 cut(s) 499, 1101
BstXI CCANNNNNNTGG 2 cut(s) 510, 1507
BstYI RGATCY 2 cut(s) 499, 1101
BtgI CCRYGG 2 cut(s) 257, 509
BtgZI GCGATG 2 cut(s) 502, 1265
BtsCI GGATG 2 cut(s) 754, 899
BtsI GCAGTG 1 cut(s) 1425
BtsIMutI CAGTG 2 cut(s) 646, 1425
BtuMI TCGCGA 1 cut(s) 368
Cac8I GCNNGC 3 cut(s) 541, 1014, 1575
CfoI GCGC 1 cut(s) 1543
Cfr10I RCCGGY 2 cut(s) 557, 686
Cfr13I GGNCC 1 cut(s) 1040
CsiI ACCWGGT 1 cut(s) 1229
Csp6I GTAC 1 cut(s) 923
CspAI ACCGGT 1 cut(s) 557
CviAII CATG 4 cut(s) 258, 1185, 1215, 1335
CviQI GTAC 1 cut(s) 923
DdeI CTNAG 7 cut(s) 402, 1008, 1017, 1050, 1113, 1198, 1203
DpnI GATC 9 cut(s) 58, 115, 175, 296, 371, 395, 501, 809, 1103
DpnII GATC 9 cut(s) 56, 113, 173, 294, 369, 393, 499, 807, 1101
Eam1104I CTCTTC 6 cut(s) 202, 226, 288, 602, 817, 983
EarI CTCTTC 6 cut(s) 202, 226, 288, 602, 817, 983
Eco130I CCWWGG 3 cut(s) 257, 613, 1479
Eco31I GGTCTC 4 cut(s) 566, 623, 1100, 1283
Eco47I GGWCC 1 cut(s) 1040
Eco57I CTGAAG 2 cut(s) 195, 622
Eco91I GGTNACC 1 cut(s) 566
EcoO109I RGGNCCY 1 cut(s) 1040
EcoO65I GGTNACC 1 cut(s) 566
EcoRII CCWGG 3 cut(s) 925, 1229, 1646
EcoT14I CCWWGG 3 cut(s) 257, 613, 1479
ErhI CCWWGG 3 cut(s) 257, 613, 1479
Esp3I CGTCTC 2 cut(s) 12, 163
FaeI CATG 4 cut(s) 261, 1188, 1218, 1338
FaqI GGGAC 3 cut(s) 314, 1053, 1232
FatI CATG 4 cut(s) 257, 1184, 1214, 1334
FokI GGATG 2 cut(s) 761, 906
FspBI CTAG 2 cut(s) 1395, 1454
GlaI GCGC 1 cut(s) 1542
HapII CCGG 6 cut(s) 21, 169, 251, 558, 659, 687
HhaI GCGC 1 cut(s) 1543
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 261, 1188, 1218, 1338
Hin6I GCGC 1 cut(s) 1541
HinP1I GCGC 1 cut(s) 1541
HincII GTYRAC 1 cut(s) 1615
HindII GTYRAC 1 cut(s) 1615
HindIII AAGCTT 1 cut(s) 1025
HinfI GANTC 9 cut(s) 122, 310, 594, 664, 693, 844, 1205, 1353, 1596
HpaII CCGG 6 cut(s) 21, 169, 251, 558, 659, 687
HphI GGTGA 4 cut(s) 448, 721, 997, 1219
Hpy166II GTNNAC 2 cut(s) 1425, 1615
Hpy188I TCNGA 2 cut(s) 113, 497
Hpy8I GTNNAC 2 cut(s) 1425, 1615
Hpy99I CGWCG 2 cut(s) 209, 392
HpyAV CCTTC 5 cut(s) 90, 329, 538, 678, 1172
HpyCH4III ACNGT 7 cut(s) 205, 572, 629, 764, 985, 1090, 1303
HpyCH4IV ACGT 3 cut(s) 470, 741, 1566
HpyCH4V TGCA 2 cut(s) 1139, 1475
HpyF3I CTNAG 7 cut(s) 402, 1008, 1017, 1050, 1113, 1198, 1203
HpySE526I ACGT 3 cut(s) 470, 741, 1566
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 261, 1188, 1218, 1338
HspAI GCGC 1 cut(s) 1541
Kzo9I GATC 9 cut(s) 56, 113, 173, 294, 369, 393, 499, 807, 1101
LguI GCTCTTC 1 cut(s) 983
Lsp1109I GCAGC 9 cut(s) 256, 826, 901, 1057, 1151, 1225, 1351, 1390, 1487
LweI GCATC 3 cut(s) 771, 991, 1117
MabI ACCWGGT 1 cut(s) 1229
MaeI CTAG 2 cut(s) 1395, 1454
MaeII ACGT 3 cut(s) 470, 741, 1566
MaeIII GTNAC 7 cut(s) 340, 566, 623, 737, 1132, 1168, 1180
MalI GATC 9 cut(s) 58, 115, 175, 296, 371, 395, 501, 809, 1103
MbiI CCGCTC 1 cut(s) 1451
MboI GATC 9 cut(s) 56, 113, 173, 294, 369, 393, 499, 807, 1101
MflI RGATCY 2 cut(s) 499, 1101
MhlI GDGCHC 1 cut(s) 762
MluCI AATT 4 cut(s) 94, 359, 859, 1058
MluI ACGCGT 1 cut(s) 351
MlyI GAGTC 2 cut(s) 588, 1214
MmeI TCCRAC 2 cut(s) 251, 1524
MseI TTAA 5 cut(s) 189, 276, 870, 879, 1266
MslI CAYNNNNRTG 2 cut(s) 1250, 1413
MspA1I CMGCKG 1 cut(s) 1573
MspI CCGG 6 cut(s) 21, 169, 251, 558, 659, 687
MspR9I CCNGG 3 cut(s) 927, 1231, 1648
MvaI CCWGG 3 cut(s) 927, 1231, 1648
MvnI CGCG 4 cut(s) 353, 368, 482, 543
NcoI CCATGG 1 cut(s) 257
NdeII GATC 9 cut(s) 56, 113, 173, 294, 369, 393, 499, 807, 1101
NlaIII CATG 4 cut(s) 261, 1188, 1218, 1338
NlaIV GGNNCC 5 cut(s) 25, 243, 255, 1041, 1645
NmeAIII GCCGAG 1 cut(s) 656
NmuCI GTSAC 4 cut(s) 340, 1132, 1168, 1180
NruI TCGCGA 1 cut(s) 368
OliI CACNNNNGTG 1 cut(s) 1413
PciSI GCTCTTC 1 cut(s) 983
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PfeI GAWTC 7 cut(s) 122, 310, 664, 693, 844, 1353, 1596
PinAI ACCGGT 1 cut(s) 557
Ple19I CGATCG 1 cut(s) 297
PleI GAGTC 2 cut(s) 588, 1213
PpsI GAGTC 2 cut(s) 588, 1213
Ppu21I YACGTR 1 cut(s) 1567
PpuMI RGGWCCY 1 cut(s) 1040
PshAI GACNNNNGTC 3 cut(s) 934, 1045, 1304
Psp1406I AACGTT 2 cut(s) 470, 741
Psp5II RGGWCCY 1 cut(s) 1040
Psp6I CCWGG 3 cut(s) 925, 1229, 1646
PspEI GGTNACC 1 cut(s) 566
PspGI CCWGG 3 cut(s) 925, 1229, 1646
PspN4I GGNNCC 5 cut(s) 25, 243, 255, 1041, 1645
PspPI GGNCC 1 cut(s) 1040
PspPPI RGGWCCY 1 cut(s) 1040
PstI CTGCAG 1 cut(s) 1141
PsuI RGATCY 2 cut(s) 499, 1101
PvuI CGATCG 1 cut(s) 297
RruI TCGCGA 1 cut(s) 368
RsaI GTAC 1 cut(s) 924
RsaNI GTAC 1 cut(s) 923
RseI CAYNNNNRTG 2 cut(s) 1250, 1413
SapI GCTCTTC 1 cut(s) 983
SaqAI TTAA 5 cut(s) 189, 276, 870, 879, 1266
Sau3AI GATC 9 cut(s) 56, 113, 173, 294, 369, 393, 499, 807, 1101
Sau96I GGNCC 1 cut(s) 1040
SchI GAGTC 2 cut(s) 588, 1214
ScrFI CCNGG 3 cut(s) 927, 1231, 1648
SduI GDGCHC 1 cut(s) 762
SexAI ACCWGGT 1 cut(s) 1229
SfaNI GCATC 3 cut(s) 771, 991, 1117
SfcI CTRYAG 1 cut(s) 1137
SinI GGWCC 1 cut(s) 1040
SmiMI CAYNNNNRTG 2 cut(s) 1250, 1413
Sse9I AATT 4 cut(s) 94, 359, 859, 1058
SsiI CCGC 7 cut(s) 407, 477, 480, 489, 543, 1449, 1571
SspMI CTAG 2 cut(s) 1395, 1454
StyD4I CCNGG 3 cut(s) 925, 1229, 1646
StyI CCWWGG 3 cut(s) 257, 613, 1479
TaaI ACNGT 7 cut(s) 205, 572, 629, 764, 985, 1090, 1303
TaiI ACGT 3 cut(s) 473, 744, 1569
TaqI TCGA 3 cut(s) 55, 120, 293
TaqII GACCGA 1 cut(s) 1198
TasI AATT 4 cut(s) 94, 359, 859, 1058
TauI GCSGC 4 cut(s) 409, 479, 482, 1573
TfiI GAWTC 7 cut(s) 122, 310, 664, 693, 844, 1353, 1596
Tru1I TTAA 5 cut(s) 189, 276, 870, 879, 1266
Tru9I TTAA 5 cut(s) 189, 276, 870, 879, 1266
TscAI CASTG 2 cut(s) 646, 1432
TseFI GTSAC 4 cut(s) 340, 1132, 1168, 1180
TseI GCWGC 9 cut(s) 269, 839, 914, 1070, 1139, 1238, 1339, 1403, 1475
Tsp45I GTSAC 4 cut(s) 340, 1132, 1168, 1180
TspDTI ATGAA 2 cut(s) 538, 1648
TspGWI ACGGA 3 cut(s) 439, 942, 1569
TspRI CASTG 2 cut(s) 646, 1432
VpaK11BI GGWCC 1 cut(s) 1040
XspI CTAG 2 cut(s) 1395, 1454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.