Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000466.1

Orthogroup ID

OG0010076

Physical Location & Seq

Genomic Coordinates Forward (+)

16977 .. 18330

Gene Structure 1354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000466.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atgttaggtgtggatgcagttacagctgccattcttggattatcagttctccttgtgactggtgttgttacctggaaggagtgcttagctgagtcagttgcctgggacacccttacatggtttgctgcactcattgcaatggctgggtatctcaacaaatatggtcttattgcctggtttagccaaactgtagtaaagtttgttggcggattaggtcttgggtggcagccagcttttggcattcttgttctactctatttctactctcactacttctttgccagtggagctgctcatattggggcgatgtttacagcattcttgagtgtggctagtgctcttggtactccaccattctttggtgccatggtccttgcattcctctccaacctcatgggtggcctgacccattacgggattgggtcagctcccgtcttctatggcgctggctatgttccgcttgcccagtggtggggctatggattccttatatccgtcgtcaatattatcatttggctcggagttggaggggtttggtggaagttcattggcttgtggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006536 GO:0006541 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009064 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009624 GO:0009941 GO:0009987 GO:0015075 GO:0015131 GO:0015139 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015729 GO:0015740 GO:0015742 GO:0015743 GO:0015849 GO:0016020 GO:0019676 GO:0019740 GO:0019752 GO:0022857 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051184 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071423 GO:0071702 GO:0071704 GO:0098656 GO:1901564 GO:1901605 GO:1902356 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

186

Amino Acids

19.98

Weight (kDa)

6.8

Isoelectric Point (pI)

30.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12860 AT5G12860
fragaria_vesca	FvH4_3g28880
malus_domestica	MD03G1175800.v1.1 MD11G1193500.v1.1
prunus_persica	Prupe.4G248000_v2.0.a1
pyrus_communis	pycom03g13320 pycom11g16910
rosa_chinensis	RchiOBHm_Chr5g0051981
rosa_laevigata	RLG00000034849
rosa_multiflora	Rmu_co8424073.1_g000002 Rmu_ssc0000466.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027750
rosa_rugosa	Rorug05G0275700 Rorug05G0275800
rosa_samantha	Rh5AG347500 Rh5BG358500 Rh5CG383900 Rh5DG374000 Rh7CG246800
rosa_wichuraiana	Rw5G032850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	362
AccB7I	CCANNNNNTGG	2 cut(s)	236, 359
AciI	CCGC	2 cut(s)	207, 458
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	6 cut(s)	117, 236, 359, 414, 471, 472
AjnI	CCWGG	3 cut(s)	71, 101, 173
AloI	GAACNNNNNNTCC	2 cut(s)	30, 62
AluBI	AGCT	5 cut(s)	26, 89, 233, 290, 428
AluI	AGCT	5 cut(s)	26, 89, 233, 290, 428
Alw21I	GWGCWC	1 cut(s)	340
AoxI	GGCC	1 cut(s)	400
ApeKI	GCWGC	4 cut(s)	26, 125, 226, 290
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	4 cut(s)	13, 112, 238, 277
BciT130I	CCWGG	3 cut(s)	73, 103, 175
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	189
BfoI	RGCGCY	1 cut(s)	447
BisI	GCNGC	4 cut(s)	27, 126, 227, 291
BlpI	GCTNAGC	1 cut(s)	85
BlsI	GCNGC	4 cut(s)	28, 127, 228, 292
Bme1390I	CCNGG	3 cut(s)	73, 103, 175
Bme18I	GGWCC	1 cut(s)	370
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	3 cut(s)	73, 103, 175
BmrI	ACTGGG	1 cut(s)	460
BmsI	GCATC	1 cut(s)	4
BmuI	ACTGGG	1 cut(s)	460
BpiI	GAAGAC	1 cut(s)	427
Bpu1102I	GCTNAGC	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	102, 366
Bsc4I	CCNNNNNNNGG	6 cut(s)	117, 236, 359, 414, 471, 472
Bse1I	ACTGG	3 cut(s)	64, 282, 466
Bse3DI	GCAATG	2 cut(s)	132, 144
BseBI	CCWGG	3 cut(s)	73, 103, 175
BseDI	CCNNGG	2 cut(s)	102, 366
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	6 cut(s)	117, 236, 359, 414, 471, 472
BseMI	GCAATG	2 cut(s)	132, 144
BseMII	CTCAG	1 cut(s)	81
BseNI	ACTGG	3 cut(s)	64, 282, 466
BseXI	GCAGC	4 cut(s)	13, 112, 238, 277
BseYI	CCCAGC	1 cut(s)	143
BsgI	GTGCAG	1 cut(s)	111
BshFI	GGCC	1 cut(s)	402
BshNI	GGYRCC	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	340
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	6 cut(s)	117, 236, 359, 414, 471, 472
BsmFI	GGGAC	1 cut(s)	119
BsmI	GAATGC	3 cut(s)	240, 317, 377
BsnI	GGCC	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp1720I	GCTNAGC	1 cut(s)	85
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	2 cut(s)	207, 458
BspANI	GGCC	1 cut(s)	402
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	362
BsrDI	GCAATG	2 cut(s)	132, 144
BsrI	ACTGG	3 cut(s)	64, 282, 466
BssECI	CCNNGG	2 cut(s)	102, 366
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	3 cut(s)	73, 103, 175
Bst4CI	ACNGT	1 cut(s)	190
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstC8I	GCNNGC	3 cut(s)	231, 448, 462
BstDEI	CTNAG	2 cut(s)	85, 90
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	1 cut(s)	19
BstH2I	RGCGCY	1 cut(s)	447
BstHHI	GCGC	1 cut(s)	446
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 134, 287
BstNI	CCWGG	3 cut(s)	73, 103, 175
BstSCI	CCNGG	3 cut(s)	71, 101, 173
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	4 cut(s)	13, 112, 238, 277
BstV2I	GAAGAC	1 cut(s)	427
BstXI	CCANNNNNNTGG	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	402
BtgI	CCRYGG	1 cut(s)	366
BtgZI	GCGATG	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	289, 473
Cac8I	GCNNGC	3 cut(s)	231, 448, 462
CfoI	GCGC	1 cut(s)	446
Cfr13I	GGNCC	1 cut(s)	370
Csp6I	GTAC	1 cut(s)	345
CviAII	CATG	3 cut(s)	117, 367, 394
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	2 cut(s)	85, 90
EciI	GGCGGA	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	366
Eco47I	GGWCC	1 cut(s)	370
EcoRII	CCWGG	3 cut(s)	71, 101, 173
EcoT14I	CCWWGG	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	3 cut(s)	120, 370, 397
FaiI	YATR	9 cut(s)	118, 162, 297, 368, 395, 441, 453, 480, 491
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	3 cut(s)	116, 366, 393
Fnu4HI	GCNGC	4 cut(s)	27, 126, 227, 291
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	4 cut(s)	27, 126, 227, 291
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	4 cut(s)	27, 126, 227, 291
GsaI	CCCAGC	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	447
HaeIII	GGCC	1 cut(s)	402
HhaI	GCGC	1 cut(s)	446
Hin1II	CATG	3 cut(s)	120, 370, 397
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HinfI	GANTC	2 cut(s)	92, 483
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	1 cut(s)	521
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	1 cut(s)	312
Hpy99I	CGWCG	1 cut(s)	500
HpyAV	CCTTC	1 cut(s)	70
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	4 cut(s)	17, 128, 137, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 134, 287
HpyF3I	CTNAG	2 cut(s)	85, 90
Hsp92II	CATG	3 cut(s)	120, 370, 397
HspAI	GCGC	1 cut(s)	444
LmnI	GCTCC	2 cut(s)	287, 433
Lsp1109I	GCAGC	4 cut(s)	13, 112, 238, 277
LweI	GCATC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	3 cut(s)	19, 55, 67
MboII	GAAGA	1 cut(s)	427
MhlI	GDGCHC	1 cut(s)	340
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	2 cut(s)	411, 505
MnlI	CCTC	3 cut(s)	392, 401, 521
MslI	CAYNNNNRTG	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	26
MspR9I	CCNGG	3 cut(s)	73, 103, 175
Mva1269I	GAATGC	3 cut(s)	240, 317, 377
MvaI	CCWGG	3 cut(s)	73, 103, 175
MwoI	GCNNNNNNNGC	3 cut(s)	23, 134, 287
NcoI	CCATGG	1 cut(s)	366
NlaIII	CATG	3 cut(s)	120, 370, 397
NlaIV	GGNNCC	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	55
PctI	GAATGC	3 cut(s)	240, 317, 377
PfeI	GAWTC	1 cut(s)	483
PflMI	CCANNNNNTGG	2 cut(s)	236, 359
PkrI	GCNGC	4 cut(s)	28, 127, 228, 292
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	3 cut(s)	71, 101, 173
PspFI	CCCAGC	1 cut(s)	143
PspGI	CCWGG	3 cut(s)	71, 101, 173
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
RseI	CAYNNNNRTG	1 cut(s)	137
SatI	GCNGC	4 cut(s)	27, 126, 227, 291
Sau96I	GGNCC	1 cut(s)	370
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	3 cut(s)	73, 103, 175
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	9 cut(s)	10, 28, 74, 91, 217, 235, 292, 393, 430
SfaNI	GCATC	1 cut(s)	4
SfcI	CTRYAG	1 cut(s)	189
SinI	GGWCC	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
SsiI	CCGC	2 cut(s)	207, 458
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	3 cut(s)	71, 101, 173
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	190
TfiI	GAWTC	1 cut(s)	483
TscAI	CASTG	2 cut(s)	289, 473
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	4 cut(s)	26, 125, 226, 290
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	535
TspGWI	ACGGA	1 cut(s)	484
TspRI	CASTG	2 cut(s)	289, 473
Van91I	CCANNNNNTGG	2 cut(s)	236, 359
VpaK11BI	GGWCC	1 cut(s)	370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	416
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.