Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010076

Physical Location & Seq

Genomic Coordinates Forward (+)

23174619 .. 23176680

Gene Structure 2062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG246800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGTCGCTCGCTCTCACCACCGCCCCTCTCCCCTCTCTCAGATCCCGAACCGCCTTCCCGAAATCGCTGCTACTCAAACCGAGTCCCAGACTCCGAGCCCAAACCCCACCCGGTCCTCTTAGAACCGCCGCTCTCGGCTTCAACAAAACCCTAAGCCCTCTCATTGCCTTCCCCAAACTCGCCGAGTCCTCCCGCGAGTTCGCTCCCCTCCGAAGCCGCGGCTTGGCCGTCAACGCCGCCGCCGGCGGTGGTTCCATTATTCCGGCGAAGCAGCCATGGCAAGGCGCCGCGATGAAGCCTCTGATCGCGTCCATCGCGACGGGAGTGATCCTCTGGTTCGTGCCGACTCCTGCCGGCGTCACCAAAATCGCGTGGCAGCTTCTGGCGATTTTCCTCGCCACCATCGTCGGAATCATCACTCAGCCTCTGCCTCTCGGCGCCGTCGCTCTTTTAGGACTCGGAGCAGCGGTGCTGACCAAGACGCTGACCTTCGCCGCGGCCTTCTCCGCGTTCGGCGATCCGATTCCGTGGCTCATCGCCCTCGCCTTCTTCTTCGCCCGAGGGTTCATCAAGACCGGCCTCGGGAATCGGATTGCGTACCAGTTCGTGTCCTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006536 GO:0006541 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009064 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009624 GO:0009941 GO:0009987 GO:0015075 GO:0015131 GO:0015139 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015729 GO:0015740 GO:0015742 GO:0015743 GO:0015849 GO:0016020 GO:0019676 GO:0019740 GO:0019752 GO:0022857 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051184 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071423 GO:0071702 GO:0071704 GO:0098656 GO:1901564 GO:1901605 GO:1902356 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

207

Amino Acids

21.64

Weight (kDa)

12.0

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_sulph_symp	PF00939	101 - 206	5.5e-26	Sodium:sulfate symporter transmembrane region
CitMHS	PF03600	136 - 205	4.3e-08	Citrate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12860 AT5G12860
fragaria_vesca	FvH4_3g28880
malus_domestica	MD03G1175800.v1.1 MD11G1193500.v1.1
prunus_persica	Prupe.4G248000_v2.0.a1
pyrus_communis	pycom03g13320 pycom11g16910
rosa_chinensis	RchiOBHm_Chr5g0051981
rosa_laevigata	RLG00000034849
rosa_multiflora	Rmu_co8424073.1_g000002 Rmu_ssc0000466.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027750
rosa_rugosa	Rorug05G0275700 Rorug05G0275800
rosa_samantha	Rh5AG347500 Rh5BG358500 Rh5CG383900 Rh5DG374000 Rh7CG246800
rosa_wichuraiana	Rw5G032850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	287, 440
AccBSI	CCGCTC	1 cut(s)	134
AccII	CGCG	8 cut(s)	198, 222, 293, 311, 320, 374, 500, 512
AclWI	GGATC	3 cut(s)	39, 325, 515
AcoI	YGGCCR	1 cut(s)	228
AcyI	GRCGYC	4 cut(s)	5, 288, 360, 441
AfaI	GTAC	1 cut(s)	602
AfiI	CCNNNNNNNGG	3 cut(s)	226, 284, 585
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	1 cut(s)	382
AluI	AGCT	1 cut(s)	382
AlwI	GGATC	3 cut(s)	39, 325, 515
AlwNI	CAGNNNCTG	2 cut(s)	385, 430
Ama87I	CYCGRG	2 cut(s)	561, 584
AoxI	GGCC	3 cut(s)	228, 501, 580
ApeKI	GCWGC	4 cut(s)	70, 274, 379, 467
AspLEI	GCGC	2 cut(s)	290, 443
AspS9I	GGNCC	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	2 cut(s)	10, 355
AvaI	CYCGRG	2 cut(s)	561, 584
AvaII	GGWCC	1 cut(s)	116
BanI	GGYRCC	2 cut(s)	287, 440
BanII	GRGCYC	1 cut(s)	103
BbvI	GCAGC	4 cut(s)	57, 286, 391, 479
BccI	CCATC	2 cut(s)	323, 413
BceAI	ACGGC	2 cut(s)	215, 428
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BcnI	CCSGG	1 cut(s)	114
BfoI	RGCGCY	2 cut(s)	291, 444
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	116
BmeT110I	CYCGRG	2 cut(s)	561, 584
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	3 cut(s)	256, 289, 442
BmrFI	CCNGG	1 cut(s)	114
BplI	GAGNNNNNCTC	2 cut(s)	318, 350
Bpu10I	CCTNAGC	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	114
BsaHI	GRCGYC	4 cut(s)	5, 288, 360, 441
BsaJI	CCNNGG	6 cut(s)	220, 278, 498, 530, 562, 583
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 284, 585
Bse118I	RCCGGY	3 cut(s)	245, 356, 578
Bse1I	ACTGG	1 cut(s)	604
Bse3DI	GCAATG	1 cut(s)	165
BseDI	CCNNGG	6 cut(s)	220, 278, 498, 530, 562, 583
BseLI	CCNNNNNNNGG	3 cut(s)	226, 284, 585
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	55, 437
BseNI	ACTGG	1 cut(s)	604
BseXI	GCAGC	4 cut(s)	57, 286, 391, 479
Bsh1236I	CGCG	8 cut(s)	198, 222, 293, 311, 320, 374, 500, 512
BshFI	GGCC	3 cut(s)	230, 503, 582
BshNI	GGYRCC	2 cut(s)	287, 440
BsiHKCI	CYCGRG	2 cut(s)	561, 584
BsiSI	CCGG	5 cut(s)	114, 246, 266, 357, 579
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	3 cut(s)	226, 284, 585
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	3 cut(s)	230, 503, 582
BsoBI	CYCGRG	2 cut(s)	561, 584
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	4 cut(s)	44, 306, 330, 520
Bsp19I	CCATGG	1 cut(s)	278
Bsp68I	TCGCGA	1 cut(s)	320
BspANI	GGCC	3 cut(s)	230, 503, 582
BspCNI	CTCAG	2 cut(s)	54, 436
BspFNI	CGCG	8 cut(s)	198, 222, 293, 311, 320, 374, 500, 512
BspLI	GGNNCC	3 cut(s)	256, 289, 442
BspPI	GGATC	3 cut(s)	39, 325, 515
BspT107I	GGYRCC	2 cut(s)	287, 440
BsrBI	CCGCTC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	165
BsrFI	RCCGGY	3 cut(s)	245, 356, 578
BsrI	ACTGG	1 cut(s)	604
BssAI	RCCGGY	3 cut(s)	245, 356, 578
BssECI	CCNNGG	6 cut(s)	220, 278, 498, 530, 562, 583
BssMI	GATC	4 cut(s)	44, 306, 330, 520
BssNI	GRCGYC	4 cut(s)	5, 288, 360, 441
BssT1I	CCWWGG	1 cut(s)	278
BstACI	GRCGYC	4 cut(s)	5, 288, 360, 441
BstC8I	GCNNGC	3 cut(s)	12, 247, 358
BstDEI	CTNAG	4 cut(s)	41, 122, 155, 423
BstDSI	CCRYGG	4 cut(s)	220, 278, 498, 530
BstFNI	CGCG	8 cut(s)	198, 222, 293, 311, 320, 374, 500, 512
BstH2I	RGCGCY	2 cut(s)	291, 444
BstHHI	GCGC	2 cut(s)	290, 443
BstKTI	GATC	4 cut(s)	47, 309, 333, 523
BstMBI	GATC	4 cut(s)	44, 306, 330, 520
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 236, 280, 317, 509
BstSCI	CCNGG	1 cut(s)	112
BstUI	CGCG	8 cut(s)	198, 222, 293, 311, 320, 374, 500, 512
BstV1I	GCAGC	4 cut(s)	57, 286, 391, 479
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	3 cut(s)	230, 503, 582
BtgI	CCRYGG	4 cut(s)	220, 278, 498, 530
BtgZI	GCGATG	3 cut(s)	301, 308, 523
BtuMI	TCGCGA	1 cut(s)	320
Cac8I	GCNNGC	3 cut(s)	12, 247, 358
CaiI	CAGNNNCTG	2 cut(s)	385, 430
CfoI	GCGC	2 cut(s)	290, 443
Cfr10I	RCCGGY	3 cut(s)	245, 356, 578
Cfr13I	GGNCC	1 cut(s)	116
Cfr42I	CCGCGG	2 cut(s)	223, 501
CseI	GACGC	3 cut(s)	300, 349, 493
Csp6I	GTAC	1 cut(s)	601
CviAII	CATG	1 cut(s)	279
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	4 cut(s)	41, 122, 155, 423
DinI	GGCGCC	2 cut(s)	289, 442
DpnI	GATC	4 cut(s)	46, 308, 332, 522
DpnII	GATC	4 cut(s)	44, 306, 330, 520
EaeI	YGGCCR	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	116
Eco88I	CYCGRG	2 cut(s)	561, 584
EcoT14I	CCWWGG	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	103
EgeI	GGCGCC	2 cut(s)	289, 442
EheI	GGCGCC	2 cut(s)	289, 442
ErhI	CCWWGG	1 cut(s)	278
FaeI	CATG	1 cut(s)	282
FaiI	YATR	1 cut(s)	280
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	1 cut(s)	278
FauI	CCCGC	1 cut(s)	203
FriOI	GRGCYC	1 cut(s)	103
GlaI	GCGC	2 cut(s)	289, 442
HaeII	RGCGCY	2 cut(s)	291, 444
HaeIII	GGCC	3 cut(s)	230, 503, 582
HapII	CCGG	5 cut(s)	114, 246, 266, 357, 579
HgaI	GACGC	3 cut(s)	300, 349, 493
HhaI	GCGC	2 cut(s)	290, 443
Hin1I	GRCGYC	4 cut(s)	5, 288, 360, 441
Hin1II	CATG	1 cut(s)	282
Hin6I	GCGC	2 cut(s)	288, 441
HinP1I	GCGC	2 cut(s)	288, 441
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	8 cut(s)	85, 93, 188, 349, 414, 459, 526, 589
HpaII	CCGG	5 cut(s)	114, 246, 266, 357, 579
HphI	GGTGA	2 cut(s)	10, 355
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	9 cut(s)	44, 98, 215, 306, 413, 464, 525, 594, 623
Hpy188III	TCNNGA	5 cut(s)	48, 61, 319, 574, 586
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	4 cut(s)	10, 325, 413, 449
HpyAV	CCTTC	5 cut(s)	67, 181, 502, 514, 559
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 236, 280, 317, 509
HpyF3I	CTNAG	4 cut(s)	41, 122, 155, 423
Hsp92I	GRCGYC	4 cut(s)	5, 288, 360, 441
Hsp92II	CATG	1 cut(s)	282
HspAI	GCGC	2 cut(s)	288, 441
KasI	GGCGCC	2 cut(s)	287, 440
KroI	GCCGGC	2 cut(s)	245, 356
KroNI	GCCGGC	2 cut(s)	247, 358
KspI	CCGCGG	2 cut(s)	223, 501
Kzo9I	GATC	4 cut(s)	44, 306, 330, 520
LmnI	GCTCC	2 cut(s)	211, 464
Lsp1109I	GCAGC	4 cut(s)	57, 286, 391, 479
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	4 cut(s)	46, 308, 332, 522
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	4 cut(s)	44, 306, 330, 520
MboII	GAAGA	2 cut(s)	544, 547
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	103
Mly113I	GGCGCC	2 cut(s)	288, 441
MlyI	GAGTC	5 cut(s)	87, 94, 197, 343, 453
MmeI	TCCRAC	1 cut(s)	391
MreI	CGCCGGCG	1 cut(s)	245
MroNI	GCCGGC	2 cut(s)	245, 356
MspA1I	CMGCKG	3 cut(s)	222, 470, 500
MspI	CCGG	5 cut(s)	114, 246, 266, 357, 579
MspR9I	CCNGG	1 cut(s)	114
MvnI	CGCG	8 cut(s)	198, 222, 293, 311, 320, 374, 500, 512
MwoI	GCNNNNNNNGC	5 cut(s)	11, 236, 280, 317, 509
NaeI	GCCGGC	2 cut(s)	247, 358
NarI	GGCGCC	2 cut(s)	288, 441
NciI	CCSGG	1 cut(s)	114
NcoI	CCATGG	1 cut(s)	278
NdeII	GATC	4 cut(s)	44, 306, 330, 520
NgoMIV	GCCGGC	2 cut(s)	245, 356
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	3 cut(s)	256, 289, 442
NmeAIII	GCCGAG	3 cut(s)	117, 211, 417
NmuCI	GTSAC	1 cut(s)	361
NruI	TCGCGA	1 cut(s)	320
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PdiI	GCCGGC	2 cut(s)	247, 358
PfeI	GAWTC	3 cut(s)	414, 526, 589
PleI	GAGTC	5 cut(s)	87, 93, 196, 343, 453
PluTI	GGCGCC	2 cut(s)	291, 444
PpsI	GAGTC	5 cut(s)	87, 93, 196, 343, 453
PspN4I	GGNNCC	3 cut(s)	256, 289, 442
PspPI	GGNCC	1 cut(s)	116
PstNI	CAGNNNCTG	2 cut(s)	385, 430
PsuI	RGATCY	1 cut(s)	44
RruI	TCGCGA	1 cut(s)	320
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
SacII	CCGCGG	2 cut(s)	223, 501
Sau3AI	GATC	4 cut(s)	44, 306, 330, 520
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	5 cut(s)	87, 94, 197, 343, 453
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	2 cut(s)	384, 494
SfoI	GGCGCC	2 cut(s)	289, 442
Sfr303I	CCGCGG	2 cut(s)	223, 501
SgrAI	CRCCGGYG	1 cut(s)	245
SgrBI	CCGCGG	2 cut(s)	223, 501
SinI	GGWCC	1 cut(s)	116
SspDI	GGCGCC	2 cut(s)	287, 440
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	1 cut(s)	278
TauI	GCSGC	8 cut(s)	134, 222, 225, 242, 245, 293, 500, 503
TfiI	GAWTC	3 cut(s)	414, 526, 589
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	4 cut(s)	70, 274, 379, 467
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	2 cut(s)	311, 559
TspGWI	ACGGA	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.