Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010076

Physical Location & Seq

Genomic Coordinates Reverse (-)

18765009 .. 18767675

Gene Structure 2667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g16910.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCTCACGTGCTTCCAGACTTCGGTGGTTTCATCGGCAATGTTCTTGACGGCCATGGCTGCTAACCCCTTGAGCGCCAACTTGACATTAAACACGATTAAGCAGACGATTGGGTGGACGGATTGGGCCAAGGCGGCGATTGTCCCCGGTTTGGTGTCGTTGATTGTGGTGCCGTTGTTGTTGTACATTATATACCCGCCGGAGGTGAAGAGCAGCCCGGATGCGCCAAAGCTTGCCAGGGAAAGGCTGGAGAAGATGGGGCCGATGTCTAACAAAGAGATTATCATGGCCGGCACACTGTTTCTTACGGTTGGGCTTTGGATTTTTGGAGGAGTTTTGAGTGTGGATGCTGTTACTGCTGCTATTCTTGGATTATCTGTTCTCCTCGTGACTGGTGTTATTACATGGAAGGAGTGCTTAGCTGAATCAGTGGCCTGGGATACACTTACTTGGTTTGCTGCACTCATTGCAATGGCTGGGTTTTACCTTTGGTCATCATTAACAACTATTCTGCTCGTTTTACAGTTTGTTGGCGGATTGGGTCTTTCATGGCAAGCATCTTTTGGCATTCTGGTTCTTCTATATTTCTATTCTCACTACTTCTTCGCCAGTGGAGCTGCTCATATCGGTGCCATGTTTACAGCTTTCTTGTCTGTTTCTACCGCTCTTGGTACTCCTCCATACTTTGGAGCGATGGTGCTTGCATTCCTCTCCAACCTCATGGGTGGTCTTACCCATTACGGCATTGGGTCAGCACCTGTTTTTTATGGTGCTAACTACGTTCCACTTGCCAAGTGGTGGGGTTACGGATTCCTTATATCCGTCGTCAACATCATTATTTGGCTTGGAGTTGGAGGGATTTGGTGGAAGTTCATCGGCTTGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006536 GO:0006541 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009064 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009624 GO:0009941 GO:0009987 GO:0015075 GO:0015131 GO:0015139 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015729 GO:0015740 GO:0015742 GO:0015743 GO:0015849 GO:0016020 GO:0019676 GO:0019740 GO:0019752 GO:0022857 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051184 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071423 GO:0071702 GO:0071704 GO:0098656 GO:1901564 GO:1901605 GO:1902356 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

296

Amino Acids

31.88

Weight (kDa)

7.74

Isoelectric Point (pI)

34.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12860 AT5G12860
fragaria_vesca	FvH4_3g28880
malus_domestica	MD03G1175800.v1.1 MD11G1193500.v1.1
prunus_persica	Prupe.4G248000_v2.0.a1
pyrus_communis	pycom03g13320 pycom11g16910
rosa_chinensis	RchiOBHm_Chr5g0051981
rosa_laevigata	RLG00000034849
rosa_multiflora	Rmu_co8424073.1_g000002 Rmu_ssc0000466.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027750
rosa_rugosa	Rorug05G0275700 Rorug05G0275800
rosa_samantha	Rh5AG347500 Rh5BG358500 Rh5CG383900 Rh5DG374000 Rh7CG246800
rosa_wichuraiana	Rw5G032850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	169, 629
AccB7I	CCANNNNNTGG	2 cut(s)	686, 798
AccBSI	CCGCTC	1 cut(s)	665
AciI	CCGC	4 cut(s)	134, 197, 534, 663
AcoI	YGGCCR	2 cut(s)	51, 288
AcvI	CACGTG	1 cut(s)	9
AfaI	GTAC	2 cut(s)	185, 673
AfiI	CCNNNNNNNGG	6 cut(s)	22, 151, 202, 243, 686, 798
AjnI	CCWGG	2 cut(s)	236, 434
AloI	GAACNNNNNNTCC	2 cut(s)	363, 395
AluBI	AGCT	4 cut(s)	232, 422, 617, 644
AluI	AGCT	4 cut(s)	232, 422, 617, 644
AlwNI	CAGNNNCTG	1 cut(s)	758
AoxI	GGCC	5 cut(s)	51, 126, 260, 288, 432
ApeKI	GCWGC	5 cut(s)	59, 213, 359, 458, 617
AspLEI	GCGC	2 cut(s)	77, 226
AspS9I	GGNCC	2 cut(s)	126, 260
AsuC2I	CCSGG	2 cut(s)	147, 218
AsuHPI	GGTGA	1 cut(s)	217
BanI	GGYRCC	2 cut(s)	169, 629
BauI	CACGAG	1 cut(s)	386
BbrPI	CACGTG	1 cut(s)	9
BbvI	GCAGC	5 cut(s)	46, 225, 346, 445, 604
BccI	CCATC	2 cut(s)	250, 688
BceAI	ACGGC	3 cut(s)	66, 157, 757
BciT130I	CCWGG	2 cut(s)	238, 436
BciVI	GTATCC	1 cut(s)	433
BcnI	CCSGG	2 cut(s)	147, 218
BfoI	RGCGCY	1 cut(s)	78
BfuI	GTATCC	1 cut(s)	433
BglI	GCCNNNNNGGC	1 cut(s)	134
BisI	GCNGC	6 cut(s)	60, 135, 214, 360, 459, 618
BlpI	GCTNAGC	1 cut(s)	418
BlsI	GCNGC	6 cut(s)	61, 136, 215, 361, 460, 619
Bme1390I	CCNGG	4 cut(s)	147, 218, 238, 436
BmgT120I	GGNCC	2 cut(s)	126, 260
BmiI	GGNNCC	3 cut(s)	171, 261, 631
BmrFI	CCNGG	4 cut(s)	147, 218, 238, 436
BmsI	GCATC	3 cut(s)	211, 337, 566
BpmI	CTGGAG	1 cut(s)	269
Bpu1102I	GCTNAGC	1 cut(s)	418
BpuEI	CTTGAG	1 cut(s)	91
BpuMI	CCSGG	2 cut(s)	147, 218
BsaAI	YACGTR	1 cut(s)	9
BsaJI	CCNNGG	5 cut(s)	54, 129, 145, 237, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	681, 711
Bsc4I	CCNNNNNNNGG	6 cut(s)	22, 151, 202, 243, 686, 798
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	2 cut(s)	397, 609
Bse3DI	GCAATG	3 cut(s)	45, 465, 477
BseBI	CCWGG	2 cut(s)	238, 436
BseDI	CCNNGG	5 cut(s)	54, 129, 145, 237, 435
BseGI	GGATG	2 cut(s)	226, 352
BseLI	CCNNNNNNNGG	6 cut(s)	22, 151, 202, 243, 686, 798
BseMI	GCAATG	3 cut(s)	45, 465, 477
BseNI	ACTGG	2 cut(s)	397, 609
BseRI	GAGGAG	3 cut(s)	345, 374, 666
BseXI	GCAGC	5 cut(s)	46, 225, 346, 445, 604
BseYI	CCCAGC	1 cut(s)	476
BsgI	GTGCAG	1 cut(s)	444
BshFI	GGCC	5 cut(s)	53, 128, 262, 290, 434
BshNI	GGYRCC	2 cut(s)	169, 629
BsiSI	CCGG	4 cut(s)	147, 200, 218, 291
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	6 cut(s)	22, 151, 202, 243, 686, 798
BsmFI	GGGAC	1 cut(s)	128
BsmI	GAATGC	2 cut(s)	567, 704
BsnI	GGCC	5 cut(s)	53, 128, 262, 290, 434
Bsp1407I	TGTACA	1 cut(s)	183
Bsp1720I	GCTNAGC	1 cut(s)	418
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	4 cut(s)	134, 197, 534, 663
BspANI	GGCC	5 cut(s)	53, 128, 262, 290, 434
BspLI	GGNNCC	3 cut(s)	171, 261, 631
BspQI	GCTCTTC	1 cut(s)	203
BspT107I	GGYRCC	2 cut(s)	169, 629
BsrBI	CCGCTC	1 cut(s)	665
BsrDI	GCAATG	3 cut(s)	45, 465, 477
BsrFI	RCCGGY	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	183
BsrI	ACTGG	2 cut(s)	397, 609
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	5 cut(s)	54, 129, 145, 237, 435
BssSI	CACGAG	1 cut(s)	386
BssT1I	CCWWGG	2 cut(s)	54, 129
Bst2BI	CACGAG	1 cut(s)	386
Bst2UI	CCWGG	2 cut(s)	238, 436
Bst4CI	ACNGT	3 cut(s)	300, 310, 525
Bst6I	CTCTTC	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	467
BstAUI	TGTACA	1 cut(s)	183
BstBAI	YACGTR	1 cut(s)	9
BstC8I	GCNNGC	4 cut(s)	234, 292, 555, 702
BstDEI	CTNAG	1 cut(s)	418
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	226, 352
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	2 cut(s)	77, 226
BstMWI	GCNNNNNNNGC	5 cut(s)	59, 134, 356, 467, 614
BstNI	CCWGG	2 cut(s)	238, 436
BstSCI	CCNGG	4 cut(s)	145, 216, 236, 434
BstV1I	GCAGC	5 cut(s)	46, 225, 346, 445, 604
BstXI	CCANNNNNNTGG	1 cut(s)	721
BsuI	GTATCC	1 cut(s)	433
BsuRI	GGCC	5 cut(s)	53, 128, 262, 290, 434
BtgI	CCRYGG	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	707
BtsCI	GGATG	2 cut(s)	226, 352
BtsIMutI	CAGTG	3 cut(s)	296, 435, 616
Cac8I	GCNNGC	4 cut(s)	234, 292, 555, 702
CaiI	CAGNNNCTG	1 cut(s)	758
CfoI	GCGC	2 cut(s)	77, 226
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	2 cut(s)	126, 260
Csp6I	GTAC	2 cut(s)	184, 672
CviAII	CATG	6 cut(s)	55, 286, 405, 549, 634, 721
CviQI	GTAC	2 cut(s)	184, 672
DdeI	CTNAG	1 cut(s)	418
EaeI	YGGCCR	2 cut(s)	51, 288
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
EciI	GGCGGA	1 cut(s)	549
Eco130I	CCWWGG	2 cut(s)	54, 129
Eco72I	CACGTG	1 cut(s)	9
EcoRII	CCWGG	2 cut(s)	236, 434
EcoT14I	CCWWGG	2 cut(s)	54, 129
ErhI	CCWWGG	2 cut(s)	54, 129
FaeI	CATG	6 cut(s)	58, 289, 408, 552, 637, 724
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	6 cut(s)	54, 285, 404, 548, 633, 720
FauI	CCCGC	1 cut(s)	204
Fnu4HI	GCNGC	6 cut(s)	60, 135, 214, 360, 459, 618
FokI	GGATG	2 cut(s)	233, 359
Fsp4HI	GCNGC	6 cut(s)	60, 135, 214, 360, 459, 618
GlaI	GCGC	2 cut(s)	76, 225
GluI	GCNGC	6 cut(s)	60, 135, 214, 360, 459, 618
GsaI	CCCAGC	1 cut(s)	480
GsuI	CTGGAG	1 cut(s)	269
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	5 cut(s)	53, 128, 262, 290, 434
HapII	CCGG	4 cut(s)	147, 200, 218, 291
HhaI	GCGC	2 cut(s)	77, 226
Hin1II	CATG	6 cut(s)	58, 289, 408, 552, 637, 724
Hin6I	GCGC	2 cut(s)	75, 224
HinP1I	GCGC	2 cut(s)	75, 224
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	2 cut(s)	425, 810
HpaII	CCGG	4 cut(s)	147, 200, 218, 291
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	3 cut(s)	117, 639, 829
Hpy188III	TCNNGA	3 cut(s)	16, 46, 388
Hpy8I	GTNNAC	3 cut(s)	117, 639, 829
Hpy99I	CGWCG	1 cut(s)	827
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	3 cut(s)	300, 310, 525
HpyCH4IV	ACGT	2 cut(s)	8, 780
HpyCH4V	TGCA	3 cut(s)	461, 470, 704
HpyF10VI	GCNNNNNNNGC	5 cut(s)	59, 134, 356, 467, 614
HpyF3I	CTNAG	1 cut(s)	418
HpySE526I	ACGT	2 cut(s)	8, 780
Hsp92II	CATG	6 cut(s)	58, 289, 408, 552, 637, 724
HspAI	GCGC	2 cut(s)	75, 224
KroI	GCCGGC	1 cut(s)	290
KroNI	GCCGGC	1 cut(s)	292
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	2 cut(s)	614, 689
Lsp1109I	GCAGC	5 cut(s)	46, 225, 346, 445, 604
LweI	GCATC	3 cut(s)	211, 337, 566
MaeII	ACGT	2 cut(s)	8, 780
MaeIII	GTNAC	3 cut(s)	352, 388, 803
MbiI	CCGCTC	1 cut(s)	665
MboII	GAAGA	4 cut(s)	220, 265, 569, 595
MmeI	TCCRAC	2 cut(s)	738, 832
MnlI	CCTC	7 cut(s)	196, 323, 395, 687, 719, 728, 848
MroNI	GCCGGC	1 cut(s)	290
MseI	TTAA	3 cut(s)	89, 99, 500
MslI	CAYNNNNRTG	2 cut(s)	470, 627
MspI	CCGG	4 cut(s)	147, 200, 218, 291
MspR9I	CCNGG	4 cut(s)	147, 218, 238, 436
Mva1269I	GAATGC	2 cut(s)	567, 704
MvaI	CCWGG	2 cut(s)	238, 436
MwoI	GCNNNNNNNGC	5 cut(s)	59, 134, 356, 467, 614
NaeI	GCCGGC	1 cut(s)	292
NciI	CCSGG	2 cut(s)	147, 218
NcoI	CCATGG	1 cut(s)	54
NgoMIV	GCCGGC	1 cut(s)	290
NlaIII	CATG	6 cut(s)	58, 289, 408, 552, 637, 724
NlaIV	GGNNCC	3 cut(s)	171, 261, 631
NmuCI	GTSAC	1 cut(s)	388
PciSI	GCTCTTC	1 cut(s)	203
PctI	GAATGC	2 cut(s)	567, 704
PdiI	GCCGGC	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	425, 810
PflMI	CCANNNNNTGG	2 cut(s)	686, 798
PkrI	GCNGC	6 cut(s)	61, 136, 215, 361, 460, 619
PmaCI	CACGTG	1 cut(s)	9
PmlI	CACGTG	1 cut(s)	9
Ppu21I	YACGTR	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	236, 434
PspCI	CACGTG	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	476
PspGI	CCWGG	2 cut(s)	236, 434
PspN4I	GGNNCC	3 cut(s)	171, 261, 631
PspPI	GGNCC	2 cut(s)	126, 260
PstNI	CAGNNNCTG	1 cut(s)	758
RsaI	GTAC	2 cut(s)	185, 673
RsaNI	GTAC	2 cut(s)	184, 672
RseI	CAYNNNNRTG	2 cut(s)	470, 627
SapI	GCTCTTC	1 cut(s)	203
SaqAI	TTAA	3 cut(s)	89, 99, 500
SatI	GCNGC	6 cut(s)	60, 135, 214, 360, 459, 618
Sau96I	GGNCC	2 cut(s)	126, 260
ScrFI	CCNGG	4 cut(s)	147, 218, 238, 436
SfaNI	GCATC	3 cut(s)	211, 337, 566
SmiMI	CAYNNNNRTG	2 cut(s)	470, 627
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
SsiI	CCGC	4 cut(s)	134, 197, 534, 663
StyD4I	CCNGG	4 cut(s)	145, 216, 236, 434
StyI	CCWWGG	2 cut(s)	54, 129
TaaI	ACNGT	3 cut(s)	300, 310, 525
TaiI	ACGT	2 cut(s)	11, 783
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	2 cut(s)	425, 810
Tru1I	TTAA	3 cut(s)	89, 99, 500
Tru9I	TTAA	3 cut(s)	89, 99, 500
TscAI	CASTG	3 cut(s)	303, 435, 616
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	5 cut(s)	59, 213, 359, 458, 617
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	3 cut(s)	21, 537, 862
TspGWI	ACGGA	3 cut(s)	134, 811, 822
TspRI	CASTG	3 cut(s)	303, 435, 616
Van91I	CCANNNNNTGG	2 cut(s)	686, 798
XcmI	CCANNNNNNNNNTGG	3 cut(s)	244, 743, 792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.