Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8424073.1

Orthogroup ID

OG0010076

Physical Location & Seq

Genomic Coordinates Forward (+)

711 .. 1436

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8424073.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atggcgtcgctcgctctcaccaccgcccctctcccctctctcagatcccgaaccgccttcccgaaatcgctgctactcaaaccgagtcccagactccgagcccaaacccgacccggtcctcttagaaccgccgctctcggcttcaacaaagccctaagccctctcattgccttccccaaactcgccgagtcctcccgcgagttcgctcccctccgaagccgcggcttggccgtcaaggccgccgccggcggtggttccattattccgacgaagcagccatggcaaggcgccgcgatcaagcctctgatagcgtccatcgcgacgggagtgatcctctggttcgtgccgactcccgccggcgtcaccaaaatcgcgtggcagcttctggcgattttcctcgccaccatcgtcggaatcatcactcagcctctgcctctcggcgccgtcgctcttttaggactcggagcagcggtgctgacgaagacgctgaccttcgccgcggccttctccgcgttcggcgatccgattccgtggctcatcgccctcgccttcttcttcgcccgagggttcatcaagaccggcctcgggaatcggattgcgtaccagttcgtgtccttgttcggtagctcgtcgttggggttaggctacagtttggttttcagcgaggccttgttggcgccggcgattccctccgtctctgctcgtgccggaggcattttcttgccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006536 GO:0006541 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009064 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009624 GO:0009941 GO:0009987 GO:0015075 GO:0015131 GO:0015139 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015729 GO:0015740 GO:0015742 GO:0015743 GO:0015849 GO:0016020 GO:0019676 GO:0019740 GO:0019752 GO:0022857 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051184 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071423 GO:0071702 GO:0071704 GO:0098656 GO:1901564 GO:1901605 GO:1902356 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

242

Amino Acids

25.09

Weight (kDa)

11.88

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12860 AT5G12860
fragaria_vesca	FvH4_3g28880
malus_domestica	MD03G1175800.v1.1 MD11G1193500.v1.1
prunus_persica	Prupe.4G248000_v2.0.a1
pyrus_communis	pycom03g13320 pycom11g16910
rosa_chinensis	RchiOBHm_Chr5g0051981
rosa_laevigata	RLG00000034849
rosa_multiflora	Rmu_co8424073.1_g000002 Rmu_ssc0000466.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027750
rosa_rugosa	Rorug05G0275700 Rorug05G0275800
rosa_samantha	Rh5AG347500 Rh5BG358500 Rh5CG383900 Rh5DG374000 Rh7CG246800
rosa_wichuraiana	Rw5G032850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	287, 440, 676
AccBSI	CCGCTC	1 cut(s)	134
AccII	CGCG	7 cut(s)	198, 222, 293, 320, 374, 500, 512
AclWI	GGATC	3 cut(s)	39, 325, 515
AcoI	YGGCCR	1 cut(s)	228
AcyI	GRCGYC	5 cut(s)	5, 288, 360, 441, 677
AfaI	GTAC	1 cut(s)	602
AfiI	CCNNNNNNNGG	3 cut(s)	226, 284, 585
AgsI	TTSAA	1 cut(s)	145
AluBI	AGCT	2 cut(s)	382, 627
AluI	AGCT	2 cut(s)	382, 627
Alw26I	GTCTC	1 cut(s)	700
AlwI	GGATC	3 cut(s)	39, 325, 515
AlwNI	CAGNNNCTG	2 cut(s)	385, 430
Ama87I	CYCGRG	2 cut(s)	561, 584
AoxI	GGCC	5 cut(s)	228, 237, 501, 580, 666
ApeKI	GCWGC	4 cut(s)	70, 274, 379, 467
AspLEI	GCGC	3 cut(s)	290, 443, 679
AspS9I	GGNCC	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	2 cut(s)	10, 355
AvaI	CYCGRG	2 cut(s)	561, 584
AvaII	GGWCC	1 cut(s)	116
BanI	GGYRCC	3 cut(s)	287, 440, 676
BanII	GRGCYC	1 cut(s)	103
BauI	CACGAG	1 cut(s)	702
BbsI	GAAGAC	1 cut(s)	488
BbvI	GCAGC	4 cut(s)	57, 286, 391, 479
BccI	CCATC	2 cut(s)	323, 413
BceAI	ACGGC	2 cut(s)	215, 428
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	700
BfmI	CTRYAG	1 cut(s)	646
BfoI	RGCGCY	3 cut(s)	291, 444, 680
BglI	GCCNNNNNGGC	2 cut(s)	236, 674
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	116
BmeT110I	CYCGRG	2 cut(s)	561, 584
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	4 cut(s)	256, 289, 442, 678
BmrFI	CCNGG	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	488
BplI	GAGNNNNNCTC	2 cut(s)	318, 350
Bpu10I	CCTNAGC	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	114
BsaHI	GRCGYC	5 cut(s)	5, 288, 360, 441, 677
BsaJI	CCNNGG	6 cut(s)	220, 278, 498, 530, 562, 583
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	3 cut(s)	226, 284, 585
Bse118I	RCCGGY	4 cut(s)	245, 356, 578, 679
Bse1I	ACTGG	1 cut(s)	604
Bse3DI	GCAATG	1 cut(s)	165
BseDI	CCNNGG	6 cut(s)	220, 278, 498, 530, 562, 583
BseLI	CCNNNNNNNGG	3 cut(s)	226, 284, 585
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	55, 437
BseNI	ACTGG	1 cut(s)	604
BseXI	GCAGC	4 cut(s)	57, 286, 391, 479
Bsh1236I	CGCG	7 cut(s)	198, 222, 293, 320, 374, 500, 512
BshFI	GGCC	5 cut(s)	230, 239, 503, 582, 668
BshNI	GGYRCC	3 cut(s)	287, 440, 676
BsiHKCI	CYCGRG	2 cut(s)	561, 584
BsiSI	CCGG	6 cut(s)	114, 246, 357, 579, 680, 708
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	3 cut(s)	226, 284, 585
BsmAI	GTCTC	1 cut(s)	700
BsmBI	CGTCTC	1 cut(s)	700
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	5 cut(s)	230, 239, 503, 582, 668
BsoBI	CYCGRG	2 cut(s)	561, 584
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp143I	GATC	4 cut(s)	44, 294, 330, 520
Bsp19I	CCATGG	1 cut(s)	278
Bsp68I	TCGCGA	1 cut(s)	320
BspANI	GGCC	5 cut(s)	230, 239, 503, 582, 668
BspCNI	CTCAG	2 cut(s)	54, 436
BspFNI	CGCG	7 cut(s)	198, 222, 293, 320, 374, 500, 512
BspLI	GGNNCC	4 cut(s)	256, 289, 442, 678
BspPI	GGATC	3 cut(s)	39, 325, 515
BspT107I	GGYRCC	3 cut(s)	287, 440, 676
BsrBI	CCGCTC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	165
BsrFI	RCCGGY	4 cut(s)	245, 356, 578, 679
BsrI	ACTGG	1 cut(s)	604
BssAI	RCCGGY	4 cut(s)	245, 356, 578, 679
BssECI	CCNNGG	6 cut(s)	220, 278, 498, 530, 562, 583
BssMI	GATC	4 cut(s)	44, 294, 330, 520
BssNI	GRCGYC	5 cut(s)	5, 288, 360, 441, 677
BssSI	CACGAG	1 cut(s)	702
BssT1I	CCWWGG	1 cut(s)	278
Bst2BI	CACGAG	1 cut(s)	702
Bst4CI	ACNGT	1 cut(s)	650
BstACI	GRCGYC	5 cut(s)	5, 288, 360, 441, 677
BstC8I	GCNNGC	4 cut(s)	12, 247, 358, 681
BstDEI	CTNAG	4 cut(s)	41, 122, 155, 423
BstDSI	CCRYGG	4 cut(s)	220, 278, 498, 530
BstFNI	CGCG	7 cut(s)	198, 222, 293, 320, 374, 500, 512
BstH2I	RGCGCY	3 cut(s)	291, 444, 680
BstHHI	GCGC	3 cut(s)	290, 443, 679
BstKTI	GATC	4 cut(s)	47, 297, 333, 523
BstMAI	GTCTC	1 cut(s)	700
BstMBI	GATC	4 cut(s)	44, 294, 330, 520
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 236, 280, 317, 509, 674
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	1 cut(s)	646
BstUI	CGCG	7 cut(s)	198, 222, 293, 320, 374, 500, 512
BstV1I	GCAGC	4 cut(s)	57, 286, 391, 479
BstV2I	GAAGAC	1 cut(s)	488
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	5 cut(s)	230, 239, 503, 582, 668
BtgI	CCRYGG	4 cut(s)	220, 278, 498, 530
BtgZI	GCGATG	2 cut(s)	301, 523
BtuMI	TCGCGA	1 cut(s)	320
Cac8I	GCNNGC	4 cut(s)	12, 247, 358, 681
CaiI	CAGNNNCTG	2 cut(s)	385, 430
CfoI	GCGC	3 cut(s)	290, 443, 679
Cfr10I	RCCGGY	4 cut(s)	245, 356, 578, 679
Cfr13I	GGNCC	1 cut(s)	116
Cfr42I	CCGCGG	2 cut(s)	223, 501
CseI	GACGC	3 cut(s)	300, 349, 493
Csp6I	GTAC	1 cut(s)	601
CviAII	CATG	1 cut(s)	279
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	4 cut(s)	41, 122, 155, 423
DinI	GGCGCC	3 cut(s)	289, 442, 678
DpnI	GATC	4 cut(s)	46, 296, 332, 522
DpnII	GATC	4 cut(s)	44, 294, 330, 520
EaeI	YGGCCR	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	278
Eco147I	AGGCCT	1 cut(s)	668
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	116
Eco88I	CYCGRG	2 cut(s)	561, 584
EcoT14I	CCWWGG	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	103
EgeI	GGCGCC	3 cut(s)	289, 442, 678
EheI	GGCGCC	3 cut(s)	289, 442, 678
ErhI	CCWWGG	1 cut(s)	278
Esp3I	CGTCTC	1 cut(s)	700
FaeI	CATG	1 cut(s)	282
FaiI	YATR	1 cut(s)	280
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	1 cut(s)	278
FauI	CCCGC	2 cut(s)	203, 361
FriOI	GRGCYC	1 cut(s)	103
GlaI	GCGC	3 cut(s)	289, 442, 678
HaeII	RGCGCY	3 cut(s)	291, 444, 680
HaeIII	GGCC	5 cut(s)	230, 239, 503, 582, 668
HapII	CCGG	6 cut(s)	114, 246, 357, 579, 680, 708
HgaI	GACGC	3 cut(s)	300, 349, 493
HhaI	GCGC	3 cut(s)	290, 443, 679
Hin1I	GRCGYC	5 cut(s)	5, 288, 360, 441, 677
Hin1II	CATG	1 cut(s)	282
Hin6I	GCGC	3 cut(s)	288, 441, 677
HinP1I	GCGC	3 cut(s)	288, 441, 677
HinfI	GANTC	9 cut(s)	85, 93, 188, 349, 414, 459, 526, 589, 685
HpaII	CCGG	6 cut(s)	114, 246, 357, 579, 680, 708
HphI	GGTGA	2 cut(s)	10, 355
Hpy188I	TCNGA	9 cut(s)	44, 98, 215, 267, 306, 413, 464, 525, 594
Hpy188III	TCNNGA	5 cut(s)	48, 61, 319, 574, 586
Hpy99I	CGWCG	6 cut(s)	10, 271, 325, 413, 449, 634
HpyAV	CCTTC	5 cut(s)	67, 181, 502, 514, 559
HpyCH4III	ACNGT	1 cut(s)	650
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 236, 280, 317, 509, 674
HpyF3I	CTNAG	4 cut(s)	41, 122, 155, 423
Hsp92I	GRCGYC	5 cut(s)	5, 288, 360, 441, 677
Hsp92II	CATG	1 cut(s)	282
HspAI	GCGC	3 cut(s)	288, 441, 677
KasI	GGCGCC	3 cut(s)	287, 440, 676
KroI	GCCGGC	3 cut(s)	245, 356, 679
KroNI	GCCGGC	3 cut(s)	247, 358, 681
KspI	CCGCGG	2 cut(s)	223, 501
Kzo9I	GATC	4 cut(s)	44, 294, 330, 520
LmnI	GCTCC	2 cut(s)	211, 464
Lsp1109I	GCAGC	4 cut(s)	57, 286, 391, 479
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	4 cut(s)	46, 296, 332, 522
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	4 cut(s)	44, 294, 330, 520
MboII	GAAGA	3 cut(s)	493, 544, 547
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	103
Mly113I	GGCGCC	3 cut(s)	288, 441, 677
MlyI	GAGTC	5 cut(s)	87, 94, 197, 343, 453
MmeI	TCCRAC	2 cut(s)	290, 391
MreI	CGCCGGCG	3 cut(s)	245, 356, 679
MroNI	GCCGGC	3 cut(s)	245, 356, 679
MspA1I	CMGCKG	3 cut(s)	222, 470, 500
MspI	CCGG	6 cut(s)	114, 246, 357, 579, 680, 708
MspR9I	CCNGG	1 cut(s)	114
MvnI	CGCG	7 cut(s)	198, 222, 293, 320, 374, 500, 512
MwoI	GCNNNNNNNGC	6 cut(s)	11, 236, 280, 317, 509, 674
NaeI	GCCGGC	3 cut(s)	247, 358, 681
NarI	GGCGCC	3 cut(s)	288, 441, 677
NciI	CCSGG	1 cut(s)	114
NcoI	CCATGG	1 cut(s)	278
NdeII	GATC	4 cut(s)	44, 294, 330, 520
NgoMIV	GCCGGC	3 cut(s)	245, 356, 679
NlaIII	CATG	1 cut(s)	282
NlaIV	GGNNCC	4 cut(s)	256, 289, 442, 678
NmeAIII	GCCGAG	3 cut(s)	117, 211, 417
NmuCI	GTSAC	1 cut(s)	361
NruI	TCGCGA	1 cut(s)	320
PceI	AGGCCT	1 cut(s)	668
PcsI	WCGNNNNNNNCGW	1 cut(s)	405
PdiI	GCCGGC	3 cut(s)	247, 358, 681
PfeI	GAWTC	4 cut(s)	414, 526, 589, 685
PflFI	GACNNNGTC	1 cut(s)	114
PleI	GAGTC	5 cut(s)	87, 93, 196, 343, 453
PluTI	GGCGCC	3 cut(s)	291, 444, 680
PpsI	GAGTC	5 cut(s)	87, 93, 196, 343, 453
PspN4I	GGNNCC	4 cut(s)	256, 289, 442, 678
PspPI	GGNCC	1 cut(s)	116
PstNI	CAGNNNCTG	2 cut(s)	385, 430
PsuI	RGATCY	1 cut(s)	44
PsyI	GACNNNGTC	1 cut(s)	114
RruI	TCGCGA	1 cut(s)	320
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
SacII	CCGCGG	2 cut(s)	223, 501
Sau3AI	GATC	4 cut(s)	44, 294, 330, 520
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	5 cut(s)	87, 94, 197, 343, 453
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	3 cut(s)	384, 494, 629
SfcI	CTRYAG	1 cut(s)	646
SfiI	GGCCNNNNNGGCC	1 cut(s)	236
SfoI	GGCGCC	3 cut(s)	289, 442, 678
Sfr303I	CCGCGG	2 cut(s)	223, 501
SgrAI	CRCCGGYG	3 cut(s)	245, 356, 679
SgrBI	CCGCGG	2 cut(s)	223, 501
SinI	GGWCC	1 cut(s)	116
SseBI	AGGCCT	1 cut(s)	668
SspDI	GGCGCC	3 cut(s)	287, 440, 676
StuI	AGGCCT	1 cut(s)	668
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	1 cut(s)	278
TaaI	ACNGT	1 cut(s)	650
TauI	GCSGC	8 cut(s)	134, 222, 225, 242, 245, 293, 500, 503
TfiI	GAWTC	4 cut(s)	414, 526, 589, 685
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	4 cut(s)	70, 274, 379, 467
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	559
TspGWI	ACGGA	2 cut(s)	519, 682
Tth111I	GACNNNGTC	1 cut(s)	114
VpaK11BI	GGWCC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.