Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010076

Physical Location & Seq

Genomic Coordinates Reverse (-)

31137646 .. 31153417

Gene Structure 15772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0275800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 7911 bp

ATGGAAGAAGGAAGCTCAGCCTCCCAGGATCAAGTTATGGTGGAGGAAGACTATGACAGTGAGGTTATGGGAGAAGAATTGCCGAAAGTTGAGCTTAAGGAGAATCATGAAGCGAAACTGAAAGAACTATTGCATAAGATTACTTCTAATGAGATTAAATTATGCGCTGCCGGTGCGAAAGAGTTTATAAAGTTGCTGAAAGGTGATTCTGGAGGTGAATTGCTGTATTACTATGTGCAAAATTCAGCTCAGTGCTCGGAGCTTCTGGGTGCGTGGAATCTCCGGCGAGGGAAGCCGGGGATGTTTTATATACTGAAGTTGATTTCTGTTGTTTTGAGTCATCCTGATGGGGTTTATGAAGCAAATGATATGGGGAGGTTGGGGGTGAGTAGGGTGTTGGACAAGTTTGCGCGGTCGATTATTGAGCAACAGTTGGGAGATGTGCATAAGGAGTTGAAGAGCAGTGAAGCTAAGCGCCAGAAGGCGGCGCTTTTGCTTTTGGCTTCGATTGTGAGGCGTGGATCGGTGTTGGCGTCTGAGGTGGAAAAGAAGTTTGATTTCAAGCTGCAGGGGTTTTGCAAGTTGGGGGAGTATAAAATGAGGCCAAATGAGAAAAGGAGGAAGCTGTCATTGAGGAAGTTGTTTGTTGGGTTTGCAATGTCGTTTCTGGAGGTGGGAGCGCCGGGATTGTTGAGGTCGGTTATACGGCAGAAGGAAATGTATTCTTGTGTCCTCCGCTGGCTGGGGAATGATGATGAGGAGACGGTTATATATGTTCTGTCCACATTGCAGAACAGGATACTTGTTGAGGGTTCATCGGTTCCCCCTGCCCTTCGGAGTGTTCTGTTTGGGAGTGGTACTTTAGAACAATTAGCCAATATTTCTGGAAGGGAGAATGGTGGAGCTTCTGCAGAATTGGCATACAGGGTCTTGGTTATGGTTTGCACCGATCCATCTAATGGCCTAATGGCAGATCCAAAGAGACACCTGAAGGGCAATTTAAAGCGGCAAATAGACCTAATGAAGAAGCTTAAGGCGACCGAGATTGGCTATCACAGGGATCTGCTTTTGGCTGTTGTTAGTGGGAGACCGTCTCTTGGTGCAGCATACATGGAAGAGTTCCCTTACAATCTTGAAGATTATGCATCACCCAAATGGTTTTCTGTTGTTACTCTAGCAGCAAACTTGGTTTCCTCTGTGGGTAGTGGGATCCCAGCCTTGTTTGACAATGTTGATGTGCAGGATGTCATGAAATGCTTGTATCCTCGCCAGTTCAACCGCTCCATGATCAATAAAGGGTTGCTTCACTCTGATTTTCTAGTGAAGCATGGAACTTTAAGGCATCTTTTAGAGGCACTCAAGTTGTTAGATTCCTTCCTTGGTGTTTTAAACTGTAGAGACCAACATGTTTCGGAATCTCTCAAGCAAGAATTTCAAAATGAAGTTCGAAGCTTGCTCCCAGATCCTCAACTTTTTAAGACTCTACTCTCTTCTATGAGTAGCAACTCAAGAAAGAGGACAGCAGATCTGGAGAAGTTCCCAGAACATAGCCCGAAGAATGTGAAAAAATTGAAAACAGATTTTGGAAACAAGGACTCAGATATTGTTGTAGGCGGAATTAGTTTTGGTCCAGATATGTCCGAAAATGAAGATAGTCTTGTGAATGTTATGGCAGATCTTTGGGGTTTCGATCCTTGCTCCACACCTATTACTGCACTCAAGGATGCAGACTTATATTTCTACTGTAGGGTGCTCGATGCTTTCAAAATATATCTTCGGATAATGCCCACTGGCTTGGAGGGCTCATTTGAGTTCCTTATGAAGCTCCTAAGCAGTCCTTTAGCATTACAAAATAATCTGCGGTGCTCTCTTTTGTCTTTGCTAATAGAATACATTGGATGGTCTCCAAGGAATAGAACACGAATTAAGATTCCACCCTTGATGTGCAAACATCTACAGACATTGATGAAGTTGCTGATTTTTTCACCACTCAGTGACATAAAAGATCAAGCATACTGTCTCACACAAGCAGCTATGTTAAGTACTGGTGCTTTTGACAGAAACCAACATGAAATTGCATCATGGTTTTTGTTTATACCGGGTTTTGATAGAGGAAAATCTTCGGTTGAAGTCCTGGGGGTGGGAGTATTACAAAGCTTGGCTAATGCTGTCATCTCATTCTTATCTGATGCCGTTTCTACTACAGGGAAGAATTTCTTCAAGCATTGGGATCTTATTGTTAAGCGTGATAACTACCATTTGGAAACTGTTAAAGCTGGAGATGTGTCACCTCAGGCCCCTCTAATCTTACGGGTACTGCAGAATTGTCTGAGATTGCTTGATTCTGGATCTGGGACTTTTACGTTACCTGAGAAGACAATGATATCTACCTACGTGTGCAATACACTGAAATATATCTTGAAAACTCAGGTTGATGCACGGTTTCTATCTTCTATGATTTGCTCACTCTTGGTTGAGAGACTTGGTGACTGTTCTGCCACTCATCAGTCTAGGGGCAACTGTGAATGGAGGCCGTTGAACAGTTTATTTTTGTTTTCCCAGAGTATATCTGACCGTGAAATTTGTTGCATTTCTTCTATTGACAATAAGGCTAAGCCTCCTGGTAGTTCTTTTGCACTAGCGCTTGAGGAAGTTGGAAGACTTGCAAGAGGTGGGAGTGATGGTGAATTAGCTGGAATAACCAAAGCCTTCTTCTCCTCATTTATCTGTACAACACCTGATGAAATCTTAGCAAACTTTCCATCAGTTATGGCAATTTCACAATGCCTTGGTCTTCCATTCACTCTCTTTTCATCAATTTTCTTTCTTGAACCCACCCTTCTCCCCAGAGTTTCTAAGTTTTGGCCTGAAGTTTTTTTTCCTGGGCTTAGTATGGCTCTAACCAATATCTGTTGGAAAGGAGGAAAAGAAATTGCCTGTGGATCTCCTGATCATGCTTCTTATACAGGAGAAGCAATATGTCACCAAAATTGTGGTGCAAATGAAGCTGCTGCTACTGCCTTCAGTTTATTTTTGATGAAGGCACCTTTCCATGTTTTGTTCCCTGCCATTATGTGCATTGACGGTCCTTATTCGTTACAGCCCTCAAAGATACAAGACCTGCTTTTGGCTAAACTATCGGACTGTGCAACTGATTACCACCTTATTTCCTATTTGCGCCTTGTGTTATTTTGGCTTTATCAGATACGGTCGTCTTGTACAGTTGAACAATTAGTCGGTTTCCAACAACTTTCTGAGATTTGCTCAGTTCTGGTGAAGAACTTATTATCTCAACTATTGGTGGCTGATTCTGATTCCCTCAGAACCTCCAGTGTAAATCTATCAAGTCATGATATTCAAAAGGTGGCTGAAACTATCTTTTATCATCCTGCAATAACTACATCGTTATCCTGCCCTTTGGAGTGTAGCGAAGACTTACCAGAGGGTAACCTACCAGACAACGTGGATGCTCTCATCAATTTATCGAGGGGGAAAGTTCATAGATTAGACCATCATGCCTTGGATATATTGGCAACAACTTGCAAGTACTTGTTTTCTCTGTGCAATGACAACCAATTTACACTTGAAGTAGAAGATGGGGATGGTACAAAGTTTGTGAAGGCATTCAACGTCTTGGTTCATAAGCTCTTTCAGGAAGTCAAGGTTAAATTTGATCACAGCATTAGAAGTAACAATTGTATGGCTTTCCTCCCAACATTTTATGCTTTGCATGCTTTGAGTGGTTTTATATCTCCATTTGAGCTTCTTGAATTAGTGCGTTGGATGTTTAGTAGAGTTGATATGGATGGCAACCAGAAATCTTCTATTTGTTTTGGATCTTGTATTGCTGGTGGTGCATTTAGAAATCTATCTAATTATTTGCAGCAGCCAAATACAAAGAGAAAGGCATTTGATTTGTTTTGGACGATGGAAGAAAACAATATTAATAGCGACATTGTTGAAGAAATCTATATTAAGATATCAAAGCTTGCCTTTCTTTTGGAATCAGAAGTTGTAGATCATTGCTTGCTGGAAGCTATGAATGTGGTATACAGGCAGAAATGTATGCAAAAGTGTAATTTTCATCCATTAATAATAGTGATGTCGAGAGTTATAGCAACCACTCCAATAGAAATGCTTTCCCATTGCATTTACAGAACAAGCAAGACGAAAGCTAGATTGTTGTCTCTTCTTATTGATCTGAGCTCTATGCATTTGTCTACCCTTGGGCACTTACTTTTTGGTACTCTAGATACTAGTTGTCTACATAATGGCAATGTGACATCTGACCTAGCCCTTTCAGATCACGACTATATGATGCTTCTGCCTTCTGCTGTGTCCTACATGAATTCAGTTTTAATGAAATTTGGAGAGCCGTGCTACAGGCATTTTAGAAATATTCCTTCCTTTTATTCAAAGATTATTTTGGATGGTCTCCTTCATTGGAAGAATTTTGTTTCTCGTGATGTGTTTCATGAAGATTTTGGAGAGGTTTTGCCGTCATCTGCTGAAGAAGTTCTTAACCTCATTAATGGTAGTCTTCTTGGCAAAGCGATTTGTATGCTGCGCTATCACTATGCTTTGAATGCAGATTCAGTAGAAAGGAAAGACCGATTAAAGCATTTCAGTTCCATGTTCCCAGCTTCTGTGGGACAGGAGGAGCTGATAGACTGGGATGTTGGTGGATTGGGTTCTCACTCTTTCAATGAAACATTAAACCTTGTAAATAAAATTCATGCAAAGGTCTCGTTTTGTAGGATGCTGTTATTCCCCAAAGATACTCAGGTTCACTCTCTTTCAATTGAAGCCAGTGGGAACCTGAAAGACGTTCCTCTGGACATGGAAGATAACAAAGGTAACTCCTCACAAATGCAGTTTTTGAACATCTTGGTGGATATGTGGCAATGCATTGTTAAAACAGTCCCTTCAGTCTTTCATAGTTCTCAAAAGGGACACAGCACAGATAGTTCTTCATTGTGGAGATACCTGGAAGTTCTGATATTGAAAAGCATTTTTGAAGTGTCTAGAGAGATGCATGACAGTCTAATCAGAGCACAATCTATACCCTTCCTAGAGAAATTGATGAAACCAGCTCTTCTGCATAGGTTTGACGATCCAACAACTTTGCAAATGCTGCGTGATCTTTTGACTTTTCTATCTGGGGGGAAATTTTCGCGTGTTCCCTATCTTCAGCTTTTACTTGCACACTCTCAATTTGTGCCTACTATTCGTTCACTATCCAAACCATCACATTCTTCCCATGTGGGTGCCTTTTCTAGGCCTATGTCTAGCATTCTTAGATCACCTGTTTCCCTTACCTCAAAACAAAATGTAGATGATGGGGAATGCGATCTAGAAACATCTGAGCTGTACGTTAAACAGTTGGAGGTTATCAAATTACTGCGGACACTCCTTCCTTTCAGGTTTCAACAGGATGGTTTTGACTTTGGAAAAGATTTAGGCATTGATCTTAGGGAAGTTCATTTACTACTTTTGTCTTCTTATGGTGCAACACTTTCTGAAATTGATGTGGAGATATACAATCTGATGCGCACAATTGAGTGTATTGATGGTTTGGAGCATGTCCGATTTGCTGGAATGGATTACCTTTGGGGCAGTGCTGCGTTGAAGATAGAAAAGGAACGGAATCTGGAGCAGAGTTTGTCTCATGATACAATCAATGATGCTGAAGCAGTAAAAGAACACCGTAGAAATCAAGTTAGAGAAAATCTTGCGATTGACCCCAAAATATGCGCGTCCACTTTGCTATATTTTCCCTACCATATAGTGGCATCTGATGAGCTATTATCCTTGAACAAGTTTCAAACAGATCCTGTTGATCATATGCATGTGTTATGCTCCCCCGATGTTGACGCTAAAGAAAGATATAATCCTATTTTCATCTTGCGCTTCTCTATTCATTGTCTTTCAGAAGGTTACATTGAACCCTTGGAGTTTGCTGGTTTAGGCTTACTTGCTATTGCCTTTATGAGTATTTCATCACCTAATGACAAGATAAGAAGTTTGGGTTATGAAACTCTTGAAACATTGCAGGACAAGTTGAAGACATGTCAAAAGAAGAAGGGTGTCACGCAAATTAAGCTTCTGTTGCTTTATGTGGAAAATGGTATACAACAAATAGGGCAGAGAATCTCTTCTGTAAATGCTATTTTTGCTGCAGAGACATCCCTCATATTATTAGATACTTCACATGAACATTATGCAACTTTACTAATGCTATTGAAGAGATCGTCTGCATTGAACACGAAGAATGTACCTTTCTTTAGCAATTTTTTCTGGAGTTCCTCTATTAACTTCAGATCAGAAAGGTTGTGGATACTGCGGTTATTATATGTGGGGCTGAACTTTGACGATGATGCACATGTTTATATCAAGAATTCCATTCTTGAGACTCTGTTGAGTTTCTATGTTTCTCCCCTTTCAGATAAGGAGTCCAAGGAACTAATTCTTCAGGTAGTGAAGAAGTCAGTTAAATTGCATAAGTTGGCTCGTCATCTAGTTGAAAAATGTGGTCTGTTTCCATGGTTATCATCTCTTCTCTCAATATCCAGTGAAAGTCGTCTCGAAGATGAAACTTTGTGCTTGTTGCAGTTGAGTGTGGTATCAGAGGTGGTCAATGATGTTGTTTCTTCAAGAAACATTACTGAATGGTTGCAGAACATTGCCCTCGAGCAGCTCATGGAGTTCACATCTCATCTCTACAAATTTCTTGCGACTGATGTGACTTTGATAACAGATAATGTTGCAGTCGTCAATCAAATTCTTAAAACAATAATATCTACATTCAAGGTATCCCAAAAGAGGACGATATATCAGCCACATTTTGTTGTATCATTCGACGGTTTATATAGAATATATAAGGCGGTCAAGGTCTACAATGATGCAAGATCATGTGCTACTGTAGAGTTTGGCCTTAAAGCCATTCTTATGAGCGCCCCTCCAGCTTCCATCTTTTATGTGAGTGGTGAAAAGCTGTCAAGTTTTATCATGTGGGCAATTTCCAGTGCTGTAGAAGCAGACTCTGCAACTATGCTTCATTCCAATGAATCTCGTCAATGTTTCACTACTATTCCAGAGGAAAAAGAGGTGTATAAGAATTCTTTGATTTCAAAACTATTGCGTTGGCTAACTGCAACTGTAATTCTTGGGAAGCTTGACTGGACATCCAGTGACGTGGATCCTGAGTTCTTGAAAAGTTTGCAGTCTTTAATAACTCATGCTGACAAGGCATGTGGAGAAAGGGGCCGAAACGGATATGGTTGTGAAGAGATCTTGGCATCAGCAATTCTCTACCTTCAACAGCTCTCTGGAACAAATTACGAAATGCTACCATCTGTCATTGCTGCCCTTAGTCTTCTCCTTTCCAATGCCTCCATTTATGCAGGTTTCTTGCATGATAATGAAACTGTCCAATCACTTTGGCGGAAGATACGTTGCCCTAATGAAGCTAATCCTGCCTGGAGATGGTCATTTGACCAGCCATGGAAGGATCCGATGTTGGAAGTCACTGATTCCCAGAAGATGGAGGAACTCCATGCTTGTGAATCACTTTTAGTTATATTTTCAAATCTGCTTGGAAAACAATCATCAGAATTTCAGAAAATGCAAAAGAGAGATCAGGTGACAGGTCTTCACAGAAGGCTTGCTATTAAGGCTTCCAAAAAACCAAAGAATTCTGATGCTGCACATCAGGAATCAGATGGGAGGAAACGCGTTGATGTGTGCTCAAATTGGCTGTATGCTTTCATATTTTCCACTAGTGGGGTCTTTAACCACTACGCGTTTTGTAAATTTCCTTTGCTTTTCTCAAAAGTGCGACCGACTCTTGCTTTTGCTCTTGTTGATTTGTATGTTTACTCAGCTCTCATTCCATTTGCAAAGGCGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006536 GO:0006541 GO:0006807 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008152 GO:0008509 GO:0008514 GO:0009064 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009624 GO:0009941 GO:0009987 GO:0015075 GO:0015131 GO:0015139 GO:0015140 GO:0015318 GO:0015556 GO:0015711 GO:0015729 GO:0015740 GO:0015742 GO:0015743 GO:0015849 GO:0016020 GO:0019676 GO:0019740 GO:0019752 GO:0022857 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051181 GO:0051184 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071423 GO:0071702 GO:0071704 GO:0098656 GO:1901564 GO:1901605 GO:1902356 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_sulph_symp

Protein Analysis

2636

Amino Acids

296.53

Weight (kDa)

6.59

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Npa1	PF11707	85 - 388	6.2e-43	Ribosome 60S biogenesis N-terminal
NopRA1	PF16201	1992 - 2182	8.8e-44	Nucleolar pre-ribosomal-associated protein 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010076)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12860 AT5G12860
fragaria_vesca	FvH4_3g28880
malus_domestica	MD03G1175800.v1.1 MD11G1193500.v1.1
prunus_persica	Prupe.4G248000_v2.0.a1
pyrus_communis	pycom03g13320 pycom11g16910
rosa_chinensis	RchiOBHm_Chr5g0051981
rosa_laevigata	RLG00000034849
rosa_multiflora	Rmu_co8424073.1_g000002 Rmu_ssc0000466.1_g000003
rosa_roxburghii	Rroxscaffold_1G00027750
rosa_rugosa	Rorug05G0275700 Rorug05G0275800
rosa_samantha	Rh5AG347500 Rh5BG358500 Rh5CG383900 Rh5DG374000 Rh7CG246800
rosa_wichuraiana	Rw5G032850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	188
Acc16I	TGCGCA	1 cut(s)	5552
Acc36I	ACCTGC	2 cut(s)	3129, 7394
AccB1I	GGYRCC	2 cut(s)	3043, 5267
AccB7I	CCANNNNNTGG	3 cut(s)	959, 5788, 7543
AccBSI	CCGCTC	1 cut(s)	1281
AccI	GTMKAC	5 cut(s)	4050, 4220, 4264, 6130, 6894
AccII	CGCG	5 cut(s)	412, 5176, 5756, 7734, 7802
AcyI	GRCGYC	1 cut(s)	533
AdeI	CACNNNGTG	1 cut(s)	1994
AfeI	AGCGCT	1 cut(s)	2643
AflII	CTTAAG	2 cut(s)	95, 1031
AflIII	ACRYGT	6 cut(s)	1405, 2394, 6068, 6382, 7732, 7800
AhlI	ACTAGT	2 cut(s)	4256, 7778
AjiI	CACGTC	1 cut(s)	7195
AjnI	CCWGG	6 cut(s)	24, 2133, 2620, 2881, 4986, 7478
AjuI	GAANNNNNNNTTGG	2 cut(s)	2696, 2728
AloI	GAACNNNNNNTCC	2 cut(s)	7190, 7222
Alw21I	GWGCWC	6 cut(s)	257, 1755, 1868, 4208, 5056, 7748
AlwNI	CAGNNNCTG	3 cut(s)	4646, 5834, 7043
Ama87I	CYCGRG	1 cut(s)	6689
Aor51HI	AGCGCT	1 cut(s)	2643
AoxI	GGCC	8 cut(s)	602, 961, 2295, 2531, 2864, 5279, 6931, 7264
AseI	ATTAAT	3 cut(s)	3945, 4091, 4530
Asp700I	GAANNNNTTC	7 cut(s)	2119, 2213, 2216, 3623, 4515, 6154, 6465
AspS9I	GGNCC	4 cut(s)	1628, 2296, 3086, 7264
AsuC2I	CCSGG	3 cut(s)	297, 684, 2100
AsuII	TTCGAA	1 cut(s)	1447
AvaI	CYCGRG	1 cut(s)	6689
AvaII	GGWCC	2 cut(s)	1628, 3086
AxyI	CCTNAGG	1 cut(s)	2292
BaeGI	GKGCMC	1 cut(s)	4233
BaeI	ACNNNNGTAYC	6 cut(s)	3197, 3230, 4770, 4803, 6329, 6362
BamHI	GGATCC	3 cut(s)	1209, 7198, 7510
BanI	GGYRCC	2 cut(s)	3043, 5267
BanII	GRGCYC	2 cut(s)	1805, 4208
BarI	GAAGNNNNNNTAC	2 cut(s)	5469, 5501
BauI	CACGAG	1 cut(s)	4461
Bbv12I	GWGCWC	6 cut(s)	257, 1755, 1868, 4208, 5056, 7748
BceAI	ACGGC	5 cut(s)	722, 2177, 2518, 4360, 4483
BcgI	CGANNNNNNTGC	4 cut(s)	4543, 4577, 4728, 4762
BciT130I	CCWGG	6 cut(s)	26, 2135, 2622, 2883, 4988, 7480
BciVI	GTATCC	4 cut(s)	792, 1272, 6330, 6823
BclI	TGATCA	4 cut(s)	1287, 2950, 3673, 5839
BcnI	CCSGG	3 cut(s)	297, 684, 2100
BcuI	ACTAGT	2 cut(s)	4256, 7778
BfoI	RGCGCY	5 cut(s)	478, 491, 683, 2645, 6957
BfrI	CTTAAG	2 cut(s)	95, 1031
BfuAI	ACCTGC	2 cut(s)	3129, 7394
BfuI	GTATCC	4 cut(s)	792, 1272, 6330, 6823
BglII	AGATCT	3 cut(s)	1525, 1675, 7290
BlpI	GCTNAGC	3 cut(s)	16, 471, 2613
BmcAI	AGTACT	2 cut(s)	2044, 3548
Bme1390I	CCNGG	9 cut(s)	26, 297, 684, 2100, 2135, 2622, 2883, 4988, 7480
Bme18I	GGWCC	2 cut(s)	1628, 3086
BmeT110I	CYCGRG	1 cut(s)	6689
BmgBI	CACGTC	1 cut(s)	7195
BmgT120I	GGNCC	4 cut(s)	1628, 2296, 3086, 7264
BmiI	GGNNCC	9 cut(s)	822, 1211, 2298, 3045, 4817, 5269, 7200, 7265, 7512
BmrFI	CCNGG	9 cut(s)	26, 297, 684, 2100, 2135, 2622, 2883, 4988, 7480
BmrI	ACTGGG	1 cut(s)	4681
BmuI	ACTGGG	1 cut(s)	4681
BplI	GAGNNNNNCTC	8 cut(s)	1078, 1110, 3248, 3280, 5650, 5682, 6943, 6975
BpmI	CTGGAG	9 cut(s)	231, 689, 1550, 2298, 3313, 5672, 6319, 6945, 7501
Bpu10I	CCTNAGC	1 cut(s)	1829
Bpu1102I	GCTNAGC	3 cut(s)	16, 471, 2613
Bpu14I	TTCGAA	1 cut(s)	1447
BpuEI	CTTGAG	6 cut(s)	1343, 1406, 1492, 1703, 2666, 6428
BpuMI	CCSGG	3 cut(s)	297, 684, 2100
BsaAI	YACGTR	1 cut(s)	2395
BsaHI	GRCGYC	1 cut(s)	533
BsaI	GGTCTC	5 cut(s)	1081, 1392, 1908, 4439, 4750
BsaXI	ACNNNNNCTCC	2 cut(s)	2668, 2698
Bse118I	RCCGGY	1 cut(s)	170
Bse21I	CCTNAGG	1 cut(s)	2292
BseBI	CCWGG	6 cut(s)	26, 2135, 2622, 2883, 4988, 7480
BseRI	GAGGAG	4 cut(s)	773, 2707, 4673, 4852
BseSI	GKGCMC	1 cut(s)	4233
BseYI	CCCAGC	3 cut(s)	742, 1213, 4639
BsgI	GTGCAG	4 cut(s)	1122, 1259, 1698, 7689
Bsh1236I	CGCG	5 cut(s)	412, 5176, 5756, 7734, 7802
Bsh1285I	CGRYCG	4 cut(s)	416, 1041, 3212, 7841
BshFI	GGCC	8 cut(s)	604, 963, 2297, 2533, 2866, 5281, 6933, 7266
BshNI	GGYRCC	2 cut(s)	3043, 5267
BsiEI	CGRYCG	4 cut(s)	416, 1041, 3212, 7841
BsiHKAI	GWGCWC	6 cut(s)	257, 1755, 1868, 4208, 5056, 7748
BsiHKCI	CYCGRG	1 cut(s)	6689
BsiSI	CCGG	5 cut(s)	171, 283, 296, 683, 2099
BslFI	GGGAC	4 cut(s)	2368, 4665, 4907, 4965
BsmBI	CGTCTC	3 cut(s)	755, 1098, 6587
BsmFI	GGGAC	4 cut(s)	2368, 4665, 4907, 4965
BsmI	GAATGC	4 cut(s)	3623, 4591, 5292, 5351
BsnI	GGCC	8 cut(s)	604, 963, 2297, 2533, 2866, 5281, 6933, 7266
Bso31I	GGTCTC	5 cut(s)	1081, 1392, 1908, 4439, 4750
BsoBI	CYCGRG	1 cut(s)	6689
Bsp119I	TTCGAA	1 cut(s)	1447
Bsp1286I	GDGCHC	8 cut(s)	257, 1755, 1805, 1868, 4208, 4233, 5056, 7748
Bsp1407I	TGTACA	2 cut(s)	2729, 3218
Bsp1720I	GCTNAGC	3 cut(s)	16, 471, 2613
Bsp19I	CCATGG	2 cut(s)	6542, 7502
BspANI	GGCC	8 cut(s)	604, 963, 2297, 2533, 2866, 5281, 6933, 7266
BspFNI	CGCG	5 cut(s)	412, 5176, 5756, 7734, 7802
BspHI	TCATGA	5 cut(s)	106, 1248, 3349, 4474, 5668
BspLI	GGNNCC	9 cut(s)	822, 1211, 2298, 3045, 4817, 5269, 7200, 7265, 7512
BspMAI	CTGCAG	4 cut(s)	570, 913, 2322, 6181
BspMI	ACCTGC	2 cut(s)	3129, 7394
BspQI	GCTCTTC	2 cut(s)	452, 5100
BspT104I	TTCGAA	1 cut(s)	1447
BspT107I	GGYRCC	2 cut(s)	3043, 5267
BspTI	CTTAAG	2 cut(s)	95, 1031
BspTNI	GGTCTC	5 cut(s)	1081, 1392, 1908, 4439, 4750
BsrBI	CCGCTC	1 cut(s)	1281
BsrFI	RCCGGY	1 cut(s)	170
BsrGI	TGTACA	2 cut(s)	2729, 3218
BssAI	RCCGGY	1 cut(s)	170
BssNAI	GTATAC	2 cut(s)	4051, 6131
BssNI	GRCGYC	1 cut(s)	533
BssSI	CACGAG	1 cut(s)	4461
BssT1I	CCWWGG	9 cut(s)	1378, 1907, 2788, 3519, 4225, 5949, 6456, 6542, 7502
Bst1107I	GTATAC	2 cut(s)	4051, 6131
Bst2BI	CACGAG	1 cut(s)	4461
Bst2UI	CCWGG	6 cut(s)	26, 2135, 2622, 2883, 4988, 7480
Bst6I	CTCTTC	9 cut(s)	452, 1110, 1495, 4194, 5100, 6160, 6239, 6561, 7281
BstACI	GRCGYC	1 cut(s)	533
BstAFI	CTTAAG	2 cut(s)	95, 1031
BstAPI	GCANNNNNTGC	2 cut(s)	5134, 7043
BstAUI	TGTACA	2 cut(s)	2729, 3218
BstBAI	YACGTR	1 cut(s)	2395
BstBI	TTCGAA	1 cut(s)	1447
BstC8I	GCNNGC	6 cut(s)	740, 1454, 3732, 3990, 4028, 7665
BstDSI	CCRYGG	2 cut(s)	6542, 7502
BstEII	GGTNACC	1 cut(s)	3446
BstENI	CCTNNNNNAGG	1 cut(s)	5275
BstFNI	CGCG	5 cut(s)	412, 5176, 5756, 7734, 7802
BstH2I	RGCGCY	5 cut(s)	478, 491, 683, 2645, 6957
BstMCI	CGRYCG	4 cut(s)	416, 1041, 3212, 7841
BstNI	CCWGG	6 cut(s)	26, 2135, 2622, 2883, 4988, 7480
BstNSI	RCATGY	7 cut(s)	1409, 3734, 5585, 5852, 6072, 6386, 7254
BstPI	GGTNACC	1 cut(s)	3446
BstSCI	CCNGG	9 cut(s)	24, 295, 682, 2098, 2133, 2620, 2881, 4986, 7478
BstSLI	GKGCMC	1 cut(s)	4233
BstUI	CGCG	5 cut(s)	412, 5176, 5756, 7734, 7802
BstXI	CCANNNNNNTGG	3 cut(s)	1795, 2993, 7195
BstZ17I	GTATAC	2 cut(s)	4051, 6131
Bsu36I	CCTNAGG	1 cut(s)	2292
BsuI	GTATCC	4 cut(s)	792, 1272, 6330, 6823
BsuRI	GGCC	8 cut(s)	604, 963, 2297, 2533, 2866, 5281, 6933, 7266
BtgI	CCRYGG	2 cut(s)	6542, 7502
BtrI	CACGTC	1 cut(s)	7195
BtsI	GCAGTG	2 cut(s)	469, 5623
BveI	ACCTGC	2 cut(s)	3129, 7394
Cac8I	GCNNGC	6 cut(s)	740, 1454, 3732, 3990, 4028, 7665
CaiI	CAGNNNCTG	3 cut(s)	4646, 5834, 7043
CciI	TCATGA	5 cut(s)	106, 1248, 3349, 4474, 5668
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	4 cut(s)	1628, 2296, 3086, 7264
CseI	GACGC	3 cut(s)	522, 5745, 5882
CspCI	CAANNNNNGTGG	2 cut(s)	7234, 7269
DraI	TTTAAA	2 cut(s)	1002, 1389
DraIII	CACNNNGTG	1 cut(s)	1994
Eam1104I	CTCTTC	9 cut(s)	452, 1110, 1495, 4194, 5100, 6160, 6239, 6561, 7281
EarI	CTCTTC	9 cut(s)	452, 1110, 1495, 4194, 5100, 6160, 6239, 6561, 7281
EciI	GGCGGA	2 cut(s)	1629, 7459
Ecl136II	GAGCTC	1 cut(s)	4206
Eco130I	CCWWGG	9 cut(s)	1378, 1907, 2788, 3519, 4225, 5949, 6456, 6542, 7502
Eco147I	AGGCCT	1 cut(s)	5281
Eco24I	GRGCYC	2 cut(s)	1805, 4208
Eco31I	GGTCTC	5 cut(s)	1081, 1392, 1908, 4439, 4750
Eco32I	GATATC	2 cut(s)	2385, 3981
Eco47I	GGWCC	2 cut(s)	1628, 3086
Eco47III	AGCGCT	1 cut(s)	2643
Eco53kI	GAGCTC	1 cut(s)	4206
Eco81I	CCTNAGG	1 cut(s)	2292
Eco88I	CYCGRG	1 cut(s)	6689
Eco91I	GGTNACC	1 cut(s)	3446
EcoICRI	GAGCTC	1 cut(s)	4206
EcoNI	CCTNNNNNAGG	1 cut(s)	5275
EcoO109I	RGGNCCY	1 cut(s)	2296
EcoO65I	GGTNACC	1 cut(s)	3446
EcoRI	GAATTC	4 cut(s)	4348, 6397, 7117, 7693
EcoRII	CCWGG	6 cut(s)	24, 2133, 2620, 2881, 4986, 7478
EcoRV	GATATC	2 cut(s)	2385, 3981
EcoT14I	CCWWGG	9 cut(s)	1378, 1907, 2788, 3519, 4225, 5949, 6456, 6542, 7502
EcoT22I	ATGCAT	5 cut(s)	1147, 4215, 4910, 5037, 5850
EcoT38I	GRGCYC	2 cut(s)	1805, 4208
ErhI	CCWWGG	9 cut(s)	1378, 1907, 2788, 3519, 4225, 5949, 6456, 6542, 7502
Esp3I	CGTCTC	3 cut(s)	755, 1098, 6587
FaqI	GGGAC	4 cut(s)	2368, 4665, 4907, 4965
FauNDI	CATATG	1 cut(s)	5844
FbaI	TGATCA	4 cut(s)	1287, 2950, 3673, 5839
FblI	GTMKAC	5 cut(s)	4050, 4220, 4264, 6130, 6894
FriOI	GRGCYC	2 cut(s)	1805, 4208
FspAI	RTGCGCAY	1 cut(s)	5552
FspI	TGCGCA	1 cut(s)	5552
GsaI	CCCAGC	3 cut(s)	746, 1217, 4643
GsuI	CTGGAG	9 cut(s)	231, 689, 1550, 2298, 3313, 5672, 6319, 6945, 7501
HaeII	RGCGCY	5 cut(s)	478, 491, 683, 2645, 6957
HaeIII	GGCC	8 cut(s)	604, 963, 2297, 2533, 2866, 5281, 6933, 7266
HapII	CCGG	5 cut(s)	171, 283, 296, 683, 2099
HgaI	GACGC	3 cut(s)	522, 5745, 5882
Hin1I	GRCGYC	1 cut(s)	533
HincII	GTYRAC	1 cut(s)	5872
HindII	GTYRAC	1 cut(s)	5872
HindIII	AAGCTT	6 cut(s)	1028, 1450, 2155, 3986, 6101, 7172
HpaII	CCGG	5 cut(s)	171, 283, 296, 683, 2099
Hpy99I	CGWCG	1 cut(s)	6863
HpyCH4IV	ACGT	8 cut(s)	2363, 2394, 3462, 3630, 4827, 5373, 7194, 7453
HpySE526I	ACGT	8 cut(s)	2363, 2394, 3462, 3630, 4827, 5373, 7194, 7453
Hsp92I	GRCGYC	1 cut(s)	533
Ksp22I	TGATCA	4 cut(s)	1287, 2950, 3673, 5839
LguI	GCTCTTC	2 cut(s)	452, 5100
MaeII	ACGT	8 cut(s)	2363, 2394, 3462, 3630, 4827, 5373, 7194, 7453
MbiI	CCGCTC	1 cut(s)	1281
MfeI	CAATTG	3 cut(s)	3694, 4800, 5556
MhlI	GDGCHC	8 cut(s)	257, 1755, 1805, 1868, 4208, 4233, 5056, 7748
MluI	ACGCGT	2 cut(s)	7732, 7800
MlyI	GAGTC	7 cut(s)	346, 1474, 1589, 6406, 6461, 7034, 7837
MmeI	TCCRAC	8 cut(s)	378, 2635, 2894, 3268, 3761, 5141, 5364, 7500
Mph1103I	ATGCAT	5 cut(s)	1147, 4215, 4910, 5037, 5850
MroXI	GAANNNNTTC	7 cut(s)	2119, 2213, 2216, 3623, 4515, 6154, 6465
MslI	CAYNNNNRTG	9 cut(s)	345, 1153, 4889, 5265, 5847, 6947, 7062, 7419, 7560
MspA1I	CMGCKG	1 cut(s)	738
MspCI	CTTAAG	2 cut(s)	95, 1031
MspI	CCGG	5 cut(s)	171, 283, 296, 683, 2099
MspR9I	CCNGG	9 cut(s)	26, 297, 684, 2100, 2135, 2622, 2883, 4988, 7480
MunI	CAATTG	3 cut(s)	3694, 4800, 5556
Mva1269I	GAATGC	4 cut(s)	3623, 4591, 5292, 5351
MvaI	CCWGG	6 cut(s)	26, 2135, 2622, 2883, 4988, 7480
MvnI	CGCG	5 cut(s)	412, 5176, 5756, 7734, 7802
NciI	CCSGG	3 cut(s)	297, 684, 2100
NcoI	CCATGG	2 cut(s)	6542, 7502
NdeI	CATATG	1 cut(s)	5844
NlaIV	GGNNCC	9 cut(s)	822, 1211, 2298, 3045, 4817, 5269, 7200, 7265, 7512
NsbI	TGCGCA	1 cut(s)	5552
NsiI	ATGCAT	5 cut(s)	1147, 4215, 4910, 5037, 5850
NspI	RCATGY	7 cut(s)	1409, 3734, 5585, 5852, 6072, 6386, 7254
NspV	TTCGAA	1 cut(s)	1447
PaeI	GCATGC	1 cut(s)	3734
PaeR7I	CTCGAG	1 cut(s)	6689
PagI	TCATGA	5 cut(s)	106, 1248, 3349, 4474, 5668
PceI	AGGCCT	1 cut(s)	5281
PciI	ACATGT	3 cut(s)	1405, 6068, 6382
PciSI	GCTCTTC	2 cut(s)	452, 5100
PcsI	WCGNNNNNNNCGW	1 cut(s)	530
PctI	GAATGC	4 cut(s)	3623, 4591, 5292, 5351
PdmI	GAANNNNTTC	7 cut(s)	2119, 2213, 2216, 3623, 4515, 6154, 6465
PflMI	CCANNNNNTGG	3 cut(s)	959, 5788, 7543
PleI	GAGTC	7 cut(s)	345, 1474, 1589, 6406, 6460, 7034, 7837
PpsI	GAGTC	7 cut(s)	345, 1474, 1589, 6406, 6460, 7034, 7837
Ppu21I	YACGTR	1 cut(s)	2395
PscI	ACATGT	3 cut(s)	1405, 6068, 6382
PshBI	ATTAAT	3 cut(s)	3945, 4091, 4530
PsiI	TTATAA	1 cut(s)	188
Psp124BI	GAGCTC	1 cut(s)	4208
Psp6I	CCWGG	6 cut(s)	24, 2133, 2620, 2881, 4986, 7478
PspEI	GGTNACC	1 cut(s)	3446
PspFI	CCCAGC	3 cut(s)	742, 1213, 4639
PspGI	CCWGG	6 cut(s)	24, 2133, 2620, 2881, 4986, 7478
PspN4I	GGNNCC	9 cut(s)	822, 1211, 2298, 3045, 4817, 5269, 7200, 7265, 7512
PspPI	GGNCC	4 cut(s)	1628, 2296, 3086, 7264
PspXI	VCTCGAGB	1 cut(s)	6689
PstI	CTGCAG	4 cut(s)	570, 913, 2322, 6181
PstNI	CAGNNNCTG	3 cut(s)	4646, 5834, 7043
RseI	CAYNNNNRTG	9 cut(s)	345, 1153, 4889, 5265, 5847, 6947, 7062, 7419, 7560
SacI	GAGCTC	1 cut(s)	4208
SapI	GCTCTTC	2 cut(s)	452, 5100
Sau96I	GGNCC	4 cut(s)	1628, 2296, 3086, 7264
ScaI	AGTACT	2 cut(s)	2044, 3548
SchI	GAGTC	7 cut(s)	346, 1474, 1589, 6406, 6461, 7034, 7837
ScrFI	CCNGG	9 cut(s)	26, 297, 684, 2100, 2135, 2622, 2883, 4988, 7480
SduI	GDGCHC	8 cut(s)	257, 1755, 1805, 1868, 4208, 4233, 5056, 7748
Sfr274I	CTCGAG	1 cut(s)	6689
SfuI	TTCGAA	1 cut(s)	1447
SinI	GGWCC	2 cut(s)	1628, 3086
SlaI	CTCGAG	1 cut(s)	6689
SmiMI	CAYNNNNRTG	9 cut(s)	345, 1153, 4889, 5265, 5847, 6947, 7062, 7419, 7560
SmlI	CTYRAG	9 cut(s)	95, 1031, 1358, 1421, 1507, 1718, 2645, 6407, 6689
SmoI	CTYRAG	9 cut(s)	95, 1031, 1358, 1421, 1507, 1718, 2645, 6407, 6689
SpeI	ACTAGT	2 cut(s)	4256, 7778
SphI	GCATGC	1 cut(s)	3734
SseBI	AGGCCT	1 cut(s)	5281
SspI	AATATT	3 cut(s)	880, 3943, 4399
SstI	GAGCTC	1 cut(s)	4208
StuI	AGGCCT	1 cut(s)	5281
StyD4I	CCNGG	9 cut(s)	24, 295, 682, 2098, 2133, 2620, 2881, 4986, 7478
StyI	CCWWGG	9 cut(s)	1378, 1907, 2788, 3519, 4225, 5949, 6456, 6542, 7502
TaiI	ACGT	8 cut(s)	2366, 2397, 3465, 3633, 4830, 5376, 7197, 7456
TaqII	GACCGA	3 cut(s)	1055, 4626, 7855
TatI	WGTACW	4 cut(s)	2042, 2729, 3218, 3546
TauI	GCSGC	2 cut(s)	488, 1009
TspGWI	ACGGA	2 cut(s)	5659, 7287
Van91I	CCANNNNNTGG	3 cut(s)	959, 5788, 7543
Vha464I	CTTAAG	2 cut(s)	95, 1031
VpaK11BI	GGWCC	2 cut(s)	1628, 3086
VspI	ATTAAT	3 cut(s)	3945, 4091, 4530
XagI	CCTNNNNNAGG	1 cut(s)	5275
XbaI	TCTAGA	3 cut(s)	4249, 5024, 5353
XceI	RCATGY	7 cut(s)	1409, 3734, 5585, 5852, 6072, 6386, 7254
XhoI	CTCGAG	1 cut(s)	6689
XmiI	GTMKAC	5 cut(s)	4050, 4220, 4264, 6130, 6894
XmnI	GAANNNNTTC	7 cut(s)	2119, 2213, 2216, 3623, 4515, 6154, 6465
ZrmI	AGTACT	2 cut(s)	2044, 3548
Zsp2I	ATGCAT	5 cut(s)	1147, 4215, 4910, 5037, 5850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.