AT5G12980

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013853
Physical Location & Seq
Reverse (-)
4105383 .. 4108232
2850 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G12980.1

Sequence Viewer

Length: 936 bp
ATGGCTAATCTTCCTCCTCCGCTCTCCATGAAATCTGTCGCCCTCTCAGGAGCTTCTTCTCCTTCTTCTTCCTCCAACAACGATCGGAAGCTATCATCGGCGGAGCAGTTAATTCTCGATCTCAGCAATCCCGAACTCAGAGAAAATGCACTTCACGAGTTGTCTAAGAAGAGAGAGATCTTTCAAGATTTGGCTCCGCTTTTATGGCATTCTGTTGGTACCATTCCTGCTCTTCTACAGGAGATTATCGCAGTTTACCCTGCCCTATCTCCTCCAACCATGACTCCTGCTCAATCTAACAGGGTGTGCAATGCACTTGCTCTTCTTCAGTGTGTTGCTTCTCATACTGATACGAGAATGTTGTTCCTAAAAGCCCATCTGCCATTGTACCTGTATGCTTTCTTGAATACATCAAGCAAATCAAGACCGTTTGAGTACCTGCGGCTGACTAGCTTGGGGGTTATTGGTGCACTTGTTAAGGTTGATGATACTGAAGTGATCAGATTCCTTCTTCAAACTGAGATTGTCCCATTGTGCCTCCGGACAATGGAGAATGGCAGCGAGTTATCAAAGACTGTTGCTACTTTCATTGTTCAGAAAGTTTTGCTGGACGATGTTGGGCTTGAGTACATGTGCACGACAGCGGAGAGATTCTTTGCTCTGGGTCGGGTTTTGGGAAATATGGTTACTTCACTTGCAGAAGGACCGTCCGCTAGGCTACTAAAGCACATCATACGCTGCTATCTTCGCTTGACAGATAACCCCAGAGCATGCGATGCACTTGGAAGTTGCCTTCCAGATCTTCTGAGGGATGCTACTTTCAGTGGTTGTCTCTATGATGACCCACCTGCAATGCAATGGCTGCAGCAACTGCTCCACAACGTTAACGTTGGCGGGAGAGCACCTCAAGGGTTGGCTCATATGTTTGTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

311

Amino Acids

34.19

Weight (kDa)

6.65

Isoelectric Point (pI)

51.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rcd1 PF04078 37 - 295 3.2e-120 Cell differentiation family, Rcd1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013853)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12980
fragaria_vesca FvH4_6g42770 FvH4_6g42770
malus_domestica MD09G1071800.v1.1
prunus_persica Prupe.3G214100_v2.0.a1 Prupe.3G214100_v2.0.a1
pyrus_communis pycom09g03440
rosa_chinensis RchiOBHm_Chr2g0158671
rosa_laevigata RLG00000021105
rosa_multiflora Rmu_sc0004188.1_g000011
rosa_roxburghii Rroxscaffold_2G00091120
rosa_rugosa Rorug02G0471300
rosa_samantha Rh2AG537100 Rh2BG550300 Rh2CG520800 Rh2DG559900
rosa_wichuraiana Rw2G044470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 856
Acc36I ACCTGC 2 cut(s) 447, 856
Acc65I GGTACC 1 cut(s) 218
AccB1I GGYRCC 1 cut(s) 218
AccBSI CCGCTC 1 cut(s) 22
AccIII TCCGGA 1 cut(s) 540
AciI CCGC 7 cut(s) 20, 101, 197, 442, 644, 711, 894
AclI AACGTT 2 cut(s) 882, 888
AcuI CTGAAG 2 cut(s) 311, 513
AfaI GTAC 4 cut(s) 220, 389, 437, 629
AfiI CCNNNNNNNGG 1 cut(s) 547
AflIII ACRYGT 1 cut(s) 630
AgsI TTSAA 3 cut(s) 185, 406, 515
AluBI AGCT 3 cut(s) 53, 91, 453
AluI AGCT 3 cut(s) 53, 91, 453
Alw21I GWGCWC 3 cut(s) 472, 638, 904
Alw26I GTCTC 1 cut(s) 836
Alw44I GTGCAC 2 cut(s) 468, 634
AlwNI CAGNNNCTG 1 cut(s) 871
Aor13HI TCCGGA 1 cut(s) 540
ApaLI GTGCAC 2 cut(s) 468, 634
ApeKI GCWGC 4 cut(s) 558, 738, 862, 865
Asp718I GGTACC 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 704
AvaII GGWCC 1 cut(s) 704
BaeGI GKGCMC 2 cut(s) 472, 638
BaeI ACNNNNGTAYC 2 cut(s) 480, 513
BanI GGYRCC 1 cut(s) 218
BauI CACGAG 1 cut(s) 155
Bbv12I GWGCWC 3 cut(s) 472, 638, 904
BbvI GCAGC 4 cut(s) 570, 725, 849, 877
BccI CCATC 1 cut(s) 384
BclI TGATCA 1 cut(s) 498
BcoDI GTCTC 1 cut(s) 836
BfaI CTAG 2 cut(s) 450, 714
BfmI CTRYAG 2 cut(s) 236, 863
BfuAI ACCTGC 2 cut(s) 447, 856
BglII AGATCT 2 cut(s) 177, 799
BisI GCNGC 5 cut(s) 443, 559, 739, 863, 866
BlsI GCNGC 5 cut(s) 444, 560, 740, 864, 867
Bme18I GGWCC 1 cut(s) 704
BmgT120I GGNCC 1 cut(s) 704
BmiI GGNNCC 2 cut(s) 195, 220
BmsI GCATC 2 cut(s) 766, 802
BplI GAGNNNNNCTC 2 cut(s) 889, 921
BpuEI CTTGAG 2 cut(s) 644, 891
BsaWI WCCGGW 1 cut(s) 540
BsaXI ACNNNNNCTCC 2 cut(s) 268, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 547
Bse3DI GCAATG 3 cut(s) 316, 858, 863
BseAI TCCGGA 1 cut(s) 540
BseGI GGATG 1 cut(s) 817
BseLI CCNNNNNNNGG 1 cut(s) 547
BseMI GCAATG 3 cut(s) 316, 858, 863
BseMII CTCAG 5 cut(s) 60, 136, 151, 510, 797
BseRI GAGGAG 2 cut(s) 6, 261
BseSI GKGCMC 2 cut(s) 472, 638
BseXI GCAGC 4 cut(s) 570, 725, 849, 877
Bsh1285I CGRYCG 1 cut(s) 85
BshNI GGYRCC 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 85
BsiHKAI GWGCWC 3 cut(s) 472, 638, 904
BsiSI CCGG 1 cut(s) 541
BslFI GGGAC 1 cut(s) 512
BslI CCNNNNNNNGG 1 cut(s) 547
BsmAI GTCTC 1 cut(s) 836
BsmFI GGGAC 1 cut(s) 512
BsmI GAATGC 1 cut(s) 208
Bsp1286I GDGCHC 3 cut(s) 472, 638, 904
Bsp13I TCCGGA 1 cut(s) 540
Bsp143I GATC 5 cut(s) 82, 118, 177, 498, 799
BspACI CCGC 7 cut(s) 20, 101, 197, 442, 644, 711, 894
BspCNI CTCAG 5 cut(s) 59, 135, 150, 511, 798
BspEI TCCGGA 1 cut(s) 540
BspLI GGNNCC 2 cut(s) 195, 220
BspMAI CTGCAG 1 cut(s) 867
BspMI ACCTGC 2 cut(s) 447, 856
BspQI GCTCTTC 2 cut(s) 237, 327
BspT107I GGYRCC 1 cut(s) 218
BsrBI CCGCTC 1 cut(s) 22
BsrDI GCAATG 3 cut(s) 316, 858, 863
BssMI GATC 5 cut(s) 82, 118, 177, 498, 799
BssSI CACGAG 1 cut(s) 155
Bst2BI CACGAG 1 cut(s) 155
Bst4CI ACNGT 3 cut(s) 429, 577, 708
Bst6I CTCTTC 3 cut(s) 164, 237, 327
BstAPI GCANNNNNTGC 3 cut(s) 776, 862, 871
BstC8I GCNNGC 1 cut(s) 772
BstDEI CTNAG 6 cut(s) 46, 122, 137, 165, 519, 806
BstF5I GGATG 1 cut(s) 817
BstKTI GATC 5 cut(s) 85, 121, 180, 501, 802
BstMAI GTCTC 1 cut(s) 836
BstMBI GATC 5 cut(s) 82, 118, 177, 498, 799
BstMCI CGRYCG 1 cut(s) 85
BstMWI GCNNNNNNNGC 6 cut(s) 205, 724, 747, 776, 862, 871
BstNSI RCATGY 2 cut(s) 634, 774
BstSFI CTRYAG 2 cut(s) 236, 863
BstSLI GKGCMC 2 cut(s) 472, 638
BstV1I GCAGC 4 cut(s) 570, 725, 849, 877
BstX2I RGATCY 2 cut(s) 177, 799
BstYI RGATCY 2 cut(s) 177, 799
BtgZI GCGATG 1 cut(s) 789
BtsCI GGATG 1 cut(s) 817
BtsIMutI CAGTG 2 cut(s) 335, 829
BveI ACCTGC 2 cut(s) 447, 856
Cac8I GCNNGC 1 cut(s) 772
CaiI CAGNNNCTG 1 cut(s) 871
Cfr13I GGNCC 1 cut(s) 704
Csp6I GTAC 4 cut(s) 219, 388, 436, 628
CviAII CATG 4 cut(s) 28, 280, 631, 771
CviQI GTAC 4 cut(s) 219, 388, 436, 628
DdeI CTNAG 6 cut(s) 46, 122, 137, 165, 519, 806
DpnI GATC 5 cut(s) 84, 120, 179, 500, 801
DpnII GATC 5 cut(s) 82, 118, 177, 498, 799
Eam1104I CTCTTC 3 cut(s) 164, 237, 327
EarI CTCTTC 3 cut(s) 164, 237, 327
EciI GGCGGA 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 704
Eco57I CTGAAG 2 cut(s) 311, 513
FaeI CATG 4 cut(s) 31, 283, 634, 774
FaqI GGGAC 1 cut(s) 512
FatI CATG 4 cut(s) 27, 279, 630, 770
FauI CCCGC 1 cut(s) 887
FauNDI CATATG 1 cut(s) 921
FbaI TGATCA 1 cut(s) 498
Fnu4HI GCNGC 5 cut(s) 443, 559, 739, 863, 866
FokI GGATG 1 cut(s) 824
Fsp4HI GCNGC 5 cut(s) 443, 559, 739, 863, 866
FspBI CTAG 2 cut(s) 450, 714
GluI GCNGC 5 cut(s) 443, 559, 739, 863, 866
HapII CCGG 1 cut(s) 541
Hin1II CATG 4 cut(s) 31, 283, 634, 774
HincII GTYRAC 1 cut(s) 886
HindII GTYRAC 1 cut(s) 886
HinfI GANTC 3 cut(s) 283, 504, 651
HpaI GTTAAC 1 cut(s) 886
HpaII CCGG 1 cut(s) 541
Hpy166II GTNNAC 4 cut(s) 256, 470, 636, 886
Hpy188I TCNGA 5 cut(s) 87, 140, 503, 597, 807
Hpy188III TCNNGA 9 cut(s) 48, 116, 131, 155, 185, 403, 423, 541, 797
Hpy8I GTNNAC 4 cut(s) 256, 470, 636, 886
HpyAV CCTTC 4 cut(s) 72, 518, 695, 803
HpyCH4III ACNGT 3 cut(s) 429, 577, 708
HpyCH4IV ACGT 2 cut(s) 882, 888
HpyF10VI GCNNNNNNNGC 6 cut(s) 205, 724, 747, 776, 862, 871
HpyF3I CTNAG 6 cut(s) 46, 122, 137, 165, 519, 806
HpySE526I ACGT 2 cut(s) 882, 888
Hsp92II CATG 4 cut(s) 31, 283, 634, 774
Kpn2I TCCGGA 1 cut(s) 540
KpnI GGTACC 1 cut(s) 222
Ksp22I TGATCA 1 cut(s) 498
KspAI GTTAAC 1 cut(s) 886
Kzo9I GATC 5 cut(s) 82, 118, 177, 498, 799
LguI GCTCTTC 2 cut(s) 237, 327
LmnI GCTCC 4 cut(s) 50, 103, 199, 879
Lsp1109I GCAGC 4 cut(s) 570, 725, 849, 877
LweI GCATC 2 cut(s) 766, 802
MaeI CTAG 2 cut(s) 450, 714
MaeII ACGT 2 cut(s) 882, 888
MaeIII GTNAC 1 cut(s) 685
MalI GATC 5 cut(s) 84, 120, 179, 500, 801
MbiI CCGCTC 1 cut(s) 22
MboI GATC 5 cut(s) 82, 118, 177, 498, 799
MflI RGATCY 2 cut(s) 177, 799
MhlI GDGCHC 3 cut(s) 472, 638, 904
MluCI AATT 2 cut(s) 111, 931
MlyI GAGTC 1 cut(s) 277
MmeI TCCRAC 2 cut(s) 99, 299
MnlI CCTC 8 cut(s) 24, 27, 53, 82, 282, 548, 801, 915
MroI TCCGGA 1 cut(s) 540
MseI TTAA 4 cut(s) 110, 477, 885, 934
MspA1I CMGCKG 1 cut(s) 644
MspI CCGG 1 cut(s) 541
Mva1269I GAATGC 1 cut(s) 208
MwoI GCNNNNNNNGC 6 cut(s) 205, 724, 747, 776, 862, 871
NdeI CATATG 1 cut(s) 921
NdeII GATC 5 cut(s) 82, 118, 177, 498, 799
NlaIII CATG 4 cut(s) 31, 283, 634, 774
NlaIV GGNNCC 2 cut(s) 195, 220
NspI RCATGY 2 cut(s) 634, 774
PaeI GCATGC 1 cut(s) 774
PaqCI CACCTGC 1 cut(s) 856
PciI ACATGT 1 cut(s) 630
PciSI GCTCTTC 2 cut(s) 237, 327
PctI GAATGC 1 cut(s) 208
PfeI GAWTC 2 cut(s) 504, 651
PkrI GCNGC 5 cut(s) 444, 560, 740, 864, 867
Ple19I CGATCG 1 cut(s) 85
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PscI ACATGT 1 cut(s) 630
Psp1406I AACGTT 2 cut(s) 882, 888
PspN4I GGNNCC 2 cut(s) 195, 220
PspPI GGNCC 1 cut(s) 704
PstI CTGCAG 1 cut(s) 867
PstNI CAGNNNCTG 1 cut(s) 871
PsuI RGATCY 2 cut(s) 177, 799
PvuI CGATCG 1 cut(s) 85
RsaI GTAC 4 cut(s) 220, 389, 437, 629
RsaNI GTAC 4 cut(s) 219, 388, 436, 628
SapI GCTCTTC 2 cut(s) 237, 327
SaqAI TTAA 4 cut(s) 110, 477, 885, 934
SatI GCNGC 5 cut(s) 443, 559, 739, 863, 866
Sau3AI GATC 5 cut(s) 82, 118, 177, 498, 799
Sau96I GGNCC 1 cut(s) 704
SchI GAGTC 1 cut(s) 277
SduI GDGCHC 3 cut(s) 472, 638, 904
SfaNI GCATC 2 cut(s) 766, 802
SfcI CTRYAG 2 cut(s) 236, 863
SinI GGWCC 1 cut(s) 704
SmlI CTYRAG 2 cut(s) 623, 906
SmoI CTYRAG 2 cut(s) 623, 906
SphI GCATGC 1 cut(s) 774
Sse9I AATT 2 cut(s) 111, 931
SsiI CCGC 7 cut(s) 20, 101, 197, 442, 644, 711, 894
SspMI CTAG 2 cut(s) 450, 714
TaaI ACNGT 3 cut(s) 429, 577, 708
TaiI ACGT 2 cut(s) 885, 891
TaqI TCGA 1 cut(s) 117
TasI AATT 2 cut(s) 111, 931
TatI WGTACW 1 cut(s) 627
TauI GCSGC 1 cut(s) 445
TfiI GAWTC 2 cut(s) 504, 651
Tru1I TTAA 4 cut(s) 110, 477, 885, 934
Tru9I TTAA 4 cut(s) 110, 477, 885, 934
TscAI CASTG 2 cut(s) 335, 829
TseI GCWGC 4 cut(s) 558, 738, 862, 865
TspDTI ATGAA 2 cut(s) 44, 577
TspRI CASTG 2 cut(s) 335, 829
VneI GTGCAC 2 cut(s) 468, 634
VpaK11BI GGWCC 1 cut(s) 704
XceI RCATGY 2 cut(s) 634, 774
XspI CTAG 2 cut(s) 450, 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.