Prupe.3G214100_v2.0.a1

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0013853
Physical Location & Seq
Reverse (-)
21762469 .. 21765910
3442 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G214100.2

Sequence Viewer

Length: 1008 bp
ATGGCTATCATCACTGAGTCTTTGCTCGGCGATCAATCATCATCACGGCCACCGGAAGCTACATCGGGTCAAAACAACTCAGAGTCGACCCGGCCTAATGACGCTGACCCGTTCAAAAAGGTGAATGTGGAGCAGTGGATTCTTGAGCTTCGCGATAGACGTACCCGAGAAAACGCACTGCAACGCCTCTCTAAGATCAGGGAAATTCGTGAGGACTTGGCTCCATTGCTGTGGCATTCCTTTGGCACCACATATACATTGTTAAAGGAAATACTTGAGGTGTACCCAATGGTCACATCTCCACATCTTCTTACTCAGGAGGCATCAAATCGAGCATGCAACACACTCTCTCTATATCAGTGCGTAGCTGCTCATCCGGAGACAAGAAATCTATTTGTCAAAGCCAACATTCCAATGTATATCTACCCTTTCCTCGGCACTAAGAGCAAGGAAAAACCTTATGAATATCTGAGGCTGTCCAGCTTGGGTGTTATTGGTGCCCTTGTGAAGGATAATGATGAAGACATCATCACTTTCCTTCTCCAAACTCAAGTGTTCTGCTACTGCATCCGCTGCATTGAAGTTGGCACTATACTGTCAAGAACTGTGGCCACATTCATAATTGAAAGAATTCTGATCAGTGATCAGGGAATGAAGTACTGCATCACTTTCGCGGATAGATTCTATGTCATCACTCAAGTTCTTAGCAGGATGCTCGATAAGCTTCCCGAAGAACCCTCCCACCGGCTGCTCAAGCTCATCATTCACTGCTTTCTCAGGCTCTCAGATGGTCTAACCAGGGACGTTGACAGCTTAAGCCTATGTCTCCCTAGGAGCTTGAGGGATTCTAGAGTCATTAACCTCGTCTCTGATGACCCGGTAGCCATGTCGTATCTGAGGCGCCTGTATTGCAACGTTGCAGCAGGGAGGAAGCCTAATGGAGCAGCTGGGAAGCAGCCTAATGGAGCATCAGGTGCCGAGTCCAATGGTCGCGTGGCTAAAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

336

Amino Acids

37.78

Weight (kDa)

8.66

Isoelectric Point (pI)

47.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013853)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12980
fragaria_vesca FvH4_6g42770 FvH4_6g42770
malus_domestica MD09G1071800.v1.1
prunus_persica Prupe.3G214100_v2.0.a1 Prupe.3G214100_v2.0.a1
pyrus_communis pycom09g03440
rosa_chinensis RchiOBHm_Chr2g0158671
rosa_laevigata RLG00000021105
rosa_multiflora Rmu_sc0004188.1_g000011
rosa_roxburghii Rroxscaffold_2G00091120
rosa_rugosa Rorug02G0471300
rosa_samantha Rh2AG537100 Rh2BG550300 Rh2CG520800 Rh2DG559900
rosa_wichuraiana Rw2G044470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 245, 497, 900, 974
AccI GTMKAC 1 cut(s) 86
AccII CGCG 3 cut(s) 153, 674, 993
AccIII TCCGGA 1 cut(s) 376
AciI CCGC 2 cut(s) 571, 674
AclI AACGTT 1 cut(s) 915
AcoI YGGCCR 2 cut(s) 47, 609
AcsI RAATTY 2 cut(s) 204, 630
AcyI GRCGYC 1 cut(s) 901
AfaI GTAC 3 cut(s) 163, 284, 659
AfiI CCNNNNNNNGG 3 cut(s) 434, 508, 744
AflII CTTAAG 1 cut(s) 814
AgsI TTSAA 3 cut(s) 115, 581, 626
AjnI CCWGG 1 cut(s) 797
AluBI AGCT 9 cut(s) 59, 148, 368, 483, 724, 757, 813, 837, 947
AluI AGCT 9 cut(s) 59, 148, 368, 483, 724, 757, 813, 837, 947
Alw26I GTCTC 3 cut(s) 374, 830, 871
Ama87I CYCGRG 1 cut(s) 165
Aor13HI TCCGGA 1 cut(s) 376
AoxI GGCC 3 cut(s) 47, 92, 609
ApeKI GCWGC 6 cut(s) 368, 573, 748, 920, 944, 955
ApoI RAATTY 2 cut(s) 204, 630
Asp700I GAANNNNTTC 1 cut(s) 630
AspA2I CCTAGG 1 cut(s) 830
AspLEI GCGC 1 cut(s) 903
AsuC2I CCSGG 2 cut(s) 91, 878
AsuHPI GGTGA 1 cut(s) 133
AvaI CYCGRG 1 cut(s) 165
AvrII CCTAGG 1 cut(s) 830
BaeGI GKGCMC 1 cut(s) 502
BalI TGGCCA 1 cut(s) 611
BanI GGYRCC 4 cut(s) 245, 497, 900, 974
BbsI GAAGAC 1 cut(s) 528
BbvI GCAGC 6 cut(s) 355, 560, 735, 932, 956, 967
BccI CCATC 1 cut(s) 782
BceAI ACGGC 1 cut(s) 62
BcgI CGANNNNNNTGC 4 cut(s) 652, 686, 697, 731
BciT130I CCWGG 1 cut(s) 799
BclI TGATCA 2 cut(s) 636, 643
BcnI CCSGG 2 cut(s) 91, 878
BcoDI GTCTC 3 cut(s) 374, 830, 871
BfaI CTAG 2 cut(s) 831, 849
BfoI RGCGCY 1 cut(s) 904
BfrI CTTAAG 1 cut(s) 814
BisI GCNGC 6 cut(s) 369, 574, 749, 921, 945, 956
BlnI CCTAGG 1 cut(s) 830
BlsI GCNGC 6 cut(s) 370, 575, 750, 922, 946, 957
BmcAI AGTACT 1 cut(s) 659
Bme1390I CCNGG 3 cut(s) 91, 799, 878
BmeT110I CYCGRG 1 cut(s) 165
BmiI GGNNCC 5 cut(s) 222, 247, 499, 902, 976
BmrFI CCNGG 3 cut(s) 91, 799, 878
BmsI GCATC 5 cut(s) 332, 576, 672, 702, 977
BpiI GAAGAC 1 cut(s) 528
BpuEI CTTGAG 6 cut(s) 164, 296, 534, 681, 737, 859
BpuMI CCSGG 2 cut(s) 91, 878
BsaHI GRCGYC 1 cut(s) 901
BsaJI CCNNGG 3 cut(s) 433, 798, 830
BsaWI WCCGGW 2 cut(s) 52, 376
Bsc4I CCNNNNNNNGG 3 cut(s) 434, 508, 744
Bse118I RCCGGY 1 cut(s) 744
Bse3DI GCAATG 1 cut(s) 224
BseAI TCCGGA 1 cut(s) 376
BseBI CCWGG 1 cut(s) 799
BseDI CCNNGG 3 cut(s) 433, 798, 830
BseGI GGATG 3 cut(s) 373, 567, 717
BseLI CCNNNNNNNGG 3 cut(s) 434, 508, 744
BseMI GCAATG 1 cut(s) 224
BseMII CTCAG 7 cut(s) 6, 93, 329, 461, 790, 798, 887
BseSI GKGCMC 1 cut(s) 502
BseXI GCAGC 6 cut(s) 355, 560, 735, 932, 956, 967
BseYI CCCAGC 1 cut(s) 947
Bsh1236I CGCG 3 cut(s) 153, 674, 993
BshFI GGCC 3 cut(s) 49, 94, 611
BshNI GGYRCC 4 cut(s) 245, 497, 900, 974
BsiHKCI CYCGRG 1 cut(s) 165
BsiSI CCGG 5 cut(s) 53, 91, 377, 745, 878
BslFI GGGAC 1 cut(s) 815
BslI CCNNNNNNNGG 3 cut(s) 434, 508, 744
BsmAI GTCTC 3 cut(s) 374, 830, 871
BsmBI CGTCTC 1 cut(s) 871
BsmFI GGGAC 1 cut(s) 815
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 3 cut(s) 49, 94, 611
BsoBI CYCGRG 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 502
Bsp13I TCCGGA 1 cut(s) 376
Bsp143I GATC 4 cut(s) 31, 195, 636, 643
Bsp68I TCGCGA 1 cut(s) 153
BspACI CCGC 2 cut(s) 571, 674
BspANI GGCC 3 cut(s) 49, 94, 611
BspCNI CTCAG 7 cut(s) 7, 92, 328, 462, 789, 797, 888
BspEI TCCGGA 1 cut(s) 376
BspFNI CGCG 3 cut(s) 153, 674, 993
BspLI GGNNCC 5 cut(s) 222, 247, 499, 902, 976
BspT107I GGYRCC 4 cut(s) 245, 497, 900, 974
BspTI CTTAAG 1 cut(s) 814
BsrDI GCAATG 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 744
BssAI RCCGGY 1 cut(s) 744
BssECI CCNNGG 3 cut(s) 433, 798, 830
BssMI GATC 4 cut(s) 31, 195, 636, 643
BssNI GRCGYC 1 cut(s) 901
BssT1I CCWWGG 1 cut(s) 830
Bst2UI CCWGG 1 cut(s) 799
Bst4CI ACNGT 2 cut(s) 597, 607
BstACI GRCGYC 1 cut(s) 901
BstAFI CTTAAG 1 cut(s) 814
BstAPI GCANNNNNTGC 2 cut(s) 573, 974
BstC8I GCNNGC 1 cut(s) 337
BstENI CCTNNNNNAGG 1 cut(s) 506
BstF5I GGATG 3 cut(s) 373, 567, 717
BstFNI CGCG 3 cut(s) 153, 674, 993
BstH2I RGCGCY 1 cut(s) 904
BstHHI GCGC 1 cut(s) 903
BstKTI GATC 4 cut(s) 34, 198, 639, 646
BstMAI GTCTC 3 cut(s) 374, 830, 871
BstMBI GATC 4 cut(s) 31, 195, 636, 643
BstMWI GCNNNNNNNGC 6 cut(s) 444, 573, 721, 754, 909, 974
BstNI CCWGG 1 cut(s) 799
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 3 cut(s) 89, 797, 876
BstSLI GKGCMC 1 cut(s) 502
BstUI CGCG 3 cut(s) 153, 674, 993
BstV1I GCAGC 6 cut(s) 355, 560, 735, 932, 956, 967
BstV2I GAAGAC 1 cut(s) 528
BstXI CCANNNNNNTGG 1 cut(s) 231
BsuRI GGCC 3 cut(s) 49, 94, 611
BtsCI GGATG 3 cut(s) 373, 567, 717
BtsI GCAGTG 3 cut(s) 140, 176, 766
BtsIMutI CAGTG 6 cut(s) 12, 140, 176, 365, 646, 766
BtuMI TCGCGA 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 337
CfoI GCGC 1 cut(s) 903
Cfr10I RCCGGY 1 cut(s) 744
CseI GACGC 1 cut(s) 110
Csp6I GTAC 3 cut(s) 162, 283, 658
CspCI CAANNNNNGTGG 2 cut(s) 588, 623
CviAII CATG 2 cut(s) 336, 886
CviQI GTAC 3 cut(s) 162, 283, 658
DinI GGCGCC 1 cut(s) 902
DpnI GATC 4 cut(s) 33, 197, 638, 645
DpnII GATC 4 cut(s) 31, 195, 636, 643
EaeI YGGCCR 2 cut(s) 47, 609
Eco130I CCWWGG 1 cut(s) 830
Eco88I CYCGRG 1 cut(s) 165
EcoNI CCTNNNNNAGG 1 cut(s) 506
EcoRI GAATTC 1 cut(s) 630
EcoRII CCWGG 1 cut(s) 797
EcoT14I CCWWGG 1 cut(s) 830
EgeI GGCGCC 1 cut(s) 902
EheI GGCGCC 1 cut(s) 902
ErhI CCWWGG 1 cut(s) 830
Esp3I CGTCTC 1 cut(s) 871
FaeI CATG 2 cut(s) 339, 889
FaqI GGGAC 1 cut(s) 815
FatI CATG 2 cut(s) 335, 885
FbaI TGATCA 2 cut(s) 636, 643
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 6 cut(s) 369, 574, 749, 921, 945, 956
FokI GGATG 3 cut(s) 360, 554, 724
Fsp4HI GCNGC 6 cut(s) 369, 574, 749, 921, 945, 956
FspBI CTAG 2 cut(s) 831, 849
GlaI GCGC 1 cut(s) 902
GluI GCNGC 6 cut(s) 369, 574, 749, 921, 945, 956
GsaI CCCAGC 1 cut(s) 951
HaeII RGCGCY 1 cut(s) 904
HaeIII GGCC 3 cut(s) 49, 94, 611
HapII CCGG 5 cut(s) 53, 91, 377, 745, 878
HgaI GACGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 903
Hin1I GRCGYC 1 cut(s) 901
Hin1II CATG 2 cut(s) 339, 889
Hin6I GCGC 1 cut(s) 901
HinP1I GCGC 1 cut(s) 901
HincII GTYRAC 2 cut(s) 87, 808
HindII GTYRAC 2 cut(s) 87, 808
HindIII AAGCTT 1 cut(s) 722
HinfI GANTC 7 cut(s) 17, 83, 139, 681, 845, 852, 980
HpaII CCGG 5 cut(s) 53, 91, 377, 745, 878
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 3 cut(s) 87, 283, 808
Hpy188I TCNGA 6 cut(s) 82, 471, 636, 787, 871, 897
Hpy188III TCNNGA 8 cut(s) 143, 152, 209, 317, 377, 600, 728, 849
Hpy8I GTNNAC 3 cut(s) 87, 283, 808
HpyAV CCTTC 2 cut(s) 502, 548
HpyCH4III ACNGT 2 cut(s) 597, 607
HpyCH4IV ACGT 3 cut(s) 160, 804, 915
HpyCH4V TGCA 7 cut(s) 181, 339, 567, 576, 663, 912, 920
HpyF10VI GCNNNNNNNGC 6 cut(s) 444, 573, 721, 754, 909, 974
HpySE526I ACGT 3 cut(s) 160, 804, 915
Hsp92I GRCGYC 1 cut(s) 901
Hsp92II CATG 2 cut(s) 339, 889
HspAI GCGC 1 cut(s) 901
KasI GGCGCC 1 cut(s) 900
Kpn2I TCCGGA 1 cut(s) 376
Ksp22I TGATCA 2 cut(s) 636, 643
Kzo9I GATC 4 cut(s) 31, 195, 636, 643
LmnI GCTCC 5 cut(s) 130, 226, 834, 941, 965
Lsp1109I GCAGC 6 cut(s) 355, 560, 735, 932, 956, 967
LweI GCATC 5 cut(s) 332, 576, 672, 702, 977
MaeI CTAG 2 cut(s) 831, 849
MaeII ACGT 3 cut(s) 160, 804, 915
MaeIII GTNAC 1 cut(s) 292
MalI GATC 4 cut(s) 33, 197, 638, 645
MboI GATC 4 cut(s) 31, 195, 636, 643
MboII GAAGA 3 cut(s) 299, 533, 743
MhlI GDGCHC 1 cut(s) 502
MlsI TGGCCA 1 cut(s) 611
MluCI AATT 3 cut(s) 204, 621, 630
MluNI TGGCCA 1 cut(s) 611
Mly113I GGCGCC 1 cut(s) 901
MlyI GAGTC 4 cut(s) 26, 92, 861, 989
Mox20I TGGCCA 1 cut(s) 611
MroI TCCGGA 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 630
MscI TGGCCA 1 cut(s) 611
MseI TTAA 3 cut(s) 263, 815, 858
MslI CAYNNNNRTG 2 cut(s) 229, 413
Msp20I TGGCCA 1 cut(s) 611
MspA1I CMGCKG 2 cut(s) 573, 947
MspCI CTTAAG 1 cut(s) 814
MspI CCGG 5 cut(s) 53, 91, 377, 745, 878
MspR9I CCNGG 3 cut(s) 91, 799, 878
Mva1269I GAATGC 1 cut(s) 235
MvaI CCWGG 1 cut(s) 799
MvnI CGCG 3 cut(s) 153, 674, 993
MwoI GCNNNNNNNGC 6 cut(s) 444, 573, 721, 754, 909, 974
NarI GGCGCC 1 cut(s) 901
NciI CCSGG 2 cut(s) 91, 878
NdeII GATC 4 cut(s) 31, 195, 636, 643
NlaIII CATG 2 cut(s) 339, 889
NlaIV GGNNCC 5 cut(s) 222, 247, 499, 902, 976
NmeAIII GCCGAG 3 cut(s) 6, 414, 1003
NmuCI GTSAC 1 cut(s) 292
NruI TCGCGA 1 cut(s) 153
NspI RCATGY 1 cut(s) 339
PaeI GCATGC 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PctI GAATGC 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 3 cut(s) 139, 681, 845
PkrI GCNGC 6 cut(s) 370, 575, 750, 922, 946, 957
PleI GAGTC 4 cut(s) 25, 91, 860, 988
PluTI GGCGCC 1 cut(s) 904
PpsI GAGTC 4 cut(s) 25, 91, 860, 988
Psp1406I AACGTT 1 cut(s) 915
Psp6I CCWGG 1 cut(s) 797
PspFI CCCAGC 1 cut(s) 947
PspGI CCWGG 1 cut(s) 797
PspN4I GGNNCC 5 cut(s) 222, 247, 499, 902, 976
PvuII CAGCTG 1 cut(s) 947
RruI TCGCGA 1 cut(s) 153
RsaI GTAC 3 cut(s) 163, 284, 659
RsaNI GTAC 3 cut(s) 162, 283, 658
RseI CAYNNNNRTG 2 cut(s) 229, 413
SalI GTCGAC 1 cut(s) 85
SaqAI TTAA 3 cut(s) 263, 815, 858
SatI GCNGC 6 cut(s) 369, 574, 749, 921, 945, 956
Sau3AI GATC 4 cut(s) 31, 195, 636, 643
ScaI AGTACT 1 cut(s) 659
SchI GAGTC 4 cut(s) 26, 92, 861, 989
ScrFI CCNGG 3 cut(s) 91, 799, 878
SduI GDGCHC 1 cut(s) 502
SfaNI GCATC 5 cut(s) 332, 576, 672, 702, 977
SfoI GGCGCC 1 cut(s) 902
SmiMI CAYNNNNRTG 2 cut(s) 229, 413
SmlI CTYRAG 7 cut(s) 143, 275, 549, 696, 752, 814, 838
SmoI CTYRAG 7 cut(s) 143, 275, 549, 696, 752, 814, 838
SphI GCATGC 1 cut(s) 339
Sse9I AATT 3 cut(s) 204, 621, 630
SsiI CCGC 2 cut(s) 571, 674
SspDI GGCGCC 1 cut(s) 900
SspMI CTAG 2 cut(s) 831, 849
StyD4I CCNGG 3 cut(s) 89, 797, 876
StyI CCWWGG 1 cut(s) 830
TaaI ACNGT 2 cut(s) 597, 607
TaiI ACGT 3 cut(s) 163, 807, 918
TaqI TCGA 3 cut(s) 86, 331, 717
TasI AATT 3 cut(s) 204, 621, 630
TatI WGTACW 1 cut(s) 657
TfiI GAWTC 3 cut(s) 139, 681, 845
Tru1I TTAA 3 cut(s) 263, 815, 858
Tru9I TTAA 3 cut(s) 263, 815, 858
TscAI CASTG 6 cut(s) 19, 140, 183, 365, 646, 773
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 6 cut(s) 368, 573, 748, 920, 944, 955
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 4 cut(s) 477, 534, 607, 668
TspRI CASTG 6 cut(s) 19, 140, 183, 365, 646, 773
Vha464I CTTAAG 1 cut(s) 814
XagI CCTNNNNNAGG 1 cut(s) 506
XapI RAATTY 2 cut(s) 204, 630
XbaI TCTAGA 1 cut(s) 848
XceI RCATGY 1 cut(s) 339
XcmI CCANNNNNNNNNTGG 1 cut(s) 991
XmaJI CCTAGG 1 cut(s) 830
XmiI GTMKAC 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 2 cut(s) 831, 849
ZrmI AGTACT 1 cut(s) 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.