RLG00000021105

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013853
Physical Location & Seq
Reverse (-)
71981038 .. 71983746
2709 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021105

Sequence Viewer

Length: 1044 bp
ATGGAGAGAGATCCGAGGAGAGGCAGCAATATCACTGCCTCAATTGCTAACCTTCCAGAATCATTGTTGGGCGATCAACGATCACCACCACCAGGAGGAGGAGGTAGGGCGTTTCCAACCATGCCTGGGTCGGAGTTTGCCCCATCCATTTACGCCGACCCGGCCAGAAGGGAGGTAGAGCAGTTGATTGAGGAGCTTAACGATCGTCGTACCCGAGAACAGGCTCTACAAGGTCTCTCGAAGCTGAAGGAGGTTCCTGACGTGGCTCTATTACTGTGGCATACCAGTGGTCTCATGTTTATGCTCCTAAGGGAAATAACTGGTGTATACCACCTGATGTCAACCCCAAATCTTACTCAGGAAGTATCAAACCGAGTTTGCAATACCATAACTCTGTTTCAGTGTATAGCTTCTCATCTAGAGACAAGAAAGCCATTTATCAGAGCTAGCATGCCATTGTATCTCTACCCTTTCATTGGCACTGAGAACAAGGACAAGCCTCATGAATATCTCAGACTATCCAGCTTAGGTGCTCTTGGGGCCCTAGTGAAGGGTCACTCACCAAATAGAGATGAAGTTGATCCAGAAATTATACACTTCCTCCTAGAAAGCCAGGTATTTTGCCACTGCATCCGCTGCATGGAAGTTGGCGGTGTATTGTCAAGAACTGTGGCTACATTTATAGTTGAAAGAATTCTGACAACTGATGAGGGACTCAACTACTGCTGCAATTTCGGGGATCGGTTTTATGTAGTAACTCATGTTCTTGGAAAGATGACTGATAAGCTTCTTGAAGAACCTTCTGCCCGCCTGCTTAAACTTATCATAAAGTGCTTTCTTATACTGTCGAAAGGTCCAAGGGACAGTGAAGGTTTAAGATGCTGTATTCCTAAGAGCTTAACACATCCCAATGTTATTAACCTCCTCTCTGGTGACCGAGACGCCATGCGGGGTCTGCAACAGCTCTTGAAAAATGTTTCAAATGGGCACCAGGTTCATGTATCACCCACTGGGGAGCTAGTTGGGTACTTGATCGATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

348

Amino Acids

38.69

Weight (kDa)

6.83

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rcd1 PF04078 62 - 326 1.4e-85 Cell differentiation family, Rcd1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013853)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12980
fragaria_vesca FvH4_6g42770 FvH4_6g42770
malus_domestica MD09G1071800.v1.1
prunus_persica Prupe.3G214100_v2.0.a1 Prupe.3G214100_v2.0.a1
pyrus_communis pycom09g03440
rosa_chinensis RchiOBHm_Chr2g0158671
rosa_laevigata RLG00000021105
rosa_multiflora Rmu_sc0004188.1_g000011
rosa_roxburghii Rroxscaffold_2G00091120
rosa_rugosa Rorug02G0471300
rosa_samantha Rh2AG537100 Rh2BG550300 Rh2CG520800 Rh2DG559900
rosa_wichuraiana Rw2G044470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 987
AccI GTMKAC 1 cut(s) 327
AciI CCGC 4 cut(s) 634, 651, 808, 949
AclWI GGATC 3 cut(s) 5, 575, 747
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 1 cut(s) 693
AcuI CTGAAG 1 cut(s) 266
AcyI GRCGYC 1 cut(s) 942
AfaI GTAC 2 cut(s) 211, 1028
AfiI CCNNNNNNNGG 9 cut(s) 20, 92, 95, 98, 126, 220, 476, 550, 640
AgsI TTSAA 4 cut(s) 689, 794, 970, 981
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 4 cut(s) 91, 124, 612, 990
AluBI AGCT 9 cut(s) 196, 244, 410, 446, 525, 787, 897, 964, 1018
AluI AGCT 9 cut(s) 196, 244, 410, 446, 525, 787, 897, 964, 1018
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 4 cut(s) 239, 296, 416, 933
AlwI GGATC 3 cut(s) 5, 575, 747
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 2 cut(s) 162, 540
ApaI GGGCCC 1 cut(s) 544
ApeKI GCWGC 3 cut(s) 24, 636, 726
ApoI RAATTY 1 cut(s) 693
Asp700I GAANNNNTTC 1 cut(s) 693
AspS9I GGNCC 3 cut(s) 540, 541, 854
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 4 cut(s) 75, 552, 944, 996
AsuNHI GCTAGC 1 cut(s) 446
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 1 cut(s) 854
AxyI CCTNAGG 1 cut(s) 308
BaeGI GKGCMC 2 cut(s) 544, 990
BanI GGYRCC 1 cut(s) 987
BanII GRGCYC 1 cut(s) 544
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 3 cut(s) 36, 623, 713
BccI CCATC 2 cut(s) 151, 1031
BciT130I CCWGG 4 cut(s) 93, 126, 614, 992
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 4 cut(s) 239, 296, 416, 933
BfaI CTAG 6 cut(s) 419, 447, 545, 605, 1019, 1042
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 3 cut(s) 25, 637, 727
BlsI GCNGC 3 cut(s) 26, 638, 728
Bme1390I CCNGG 5 cut(s) 93, 126, 161, 614, 992
Bme18I GGWCC 1 cut(s) 854
BmeT110I CYCGRG 1 cut(s) 213
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 3 cut(s) 540, 541, 854
BmiI GGNNCC 4 cut(s) 255, 541, 542, 989
BmrFI CCNGG 5 cut(s) 93, 126, 161, 614, 992
BmrI ACTGGG 1 cut(s) 1020
BmsI GCATC 2 cut(s) 639, 869
BmtI GCTAGC 1 cut(s) 450
BmuI ACTGGG 1 cut(s) 1020
Bpu10I CCTNAGC 1 cut(s) 526
BpuMI CCSGG 1 cut(s) 161
Bsa29I ATCGAT 1 cut(s) 1035
BsaHI GRCGYC 1 cut(s) 942
BsaI GGTCTC 2 cut(s) 239, 296
BsaJI CCNNGG 3 cut(s) 14, 125, 857
BsaXI ACNNNNNCTCC 2 cut(s) 585, 615
Bsc4I CCNNNNNNNGG 9 cut(s) 20, 92, 95, 98, 126, 220, 476, 550, 640
Bse1I ACTGG 3 cut(s) 285, 325, 1015
Bse21I CCTNAGG 1 cut(s) 308
BseBI CCWGG 4 cut(s) 93, 126, 614, 992
BseCI ATCGAT 1 cut(s) 1035
BseDI CCNNGG 3 cut(s) 14, 125, 857
BseGI GGATG 3 cut(s) 143, 630, 904
BseLI CCNNNNNNNGG 9 cut(s) 20, 92, 95, 98, 126, 220, 476, 550, 640
BseMII CTCAG 3 cut(s) 371, 474, 526
BseNI ACTGG 3 cut(s) 285, 325, 1015
BseRI GAGGAG 5 cut(s) 31, 111, 114, 206, 914
BseSI GKGCMC 2 cut(s) 544, 990
BseXI GCAGC 3 cut(s) 36, 623, 713
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 2 cut(s) 164, 542
BshNI GGYRCC 1 cut(s) 987
BshVI ATCGAT 1 cut(s) 1035
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 535
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 2 cut(s) 726, 875
BslI CCNNNNNNNGG 9 cut(s) 20, 92, 95, 98, 126, 220, 476, 550, 640
BsmAI GTCTC 4 cut(s) 239, 296, 416, 933
BsmBI CGTCTC 1 cut(s) 933
BsmFI GGGAC 2 cut(s) 726, 875
BsnI GGCC 2 cut(s) 164, 542
Bso31I GGTCTC 2 cut(s) 239, 296
BsoBI CYCGRG 1 cut(s) 213
Bsp120I GGGCCC 1 cut(s) 540
Bsp1286I GDGCHC 3 cut(s) 535, 544, 990
Bsp143I GATC 7 cut(s) 10, 73, 80, 202, 580, 739, 1032
BspACI CCGC 4 cut(s) 634, 651, 808, 949
BspANI GGCC 2 cut(s) 164, 542
BspCNI CTCAG 3 cut(s) 370, 475, 525
BspDI ATCGAT 1 cut(s) 1035
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 4 cut(s) 255, 541, 542, 989
BspOI GCTAGC 1 cut(s) 450
BspPI GGATC 3 cut(s) 5, 575, 747
BspT107I GGYRCC 1 cut(s) 987
BspTNI GGTCTC 2 cut(s) 239, 296
BsrI ACTGG 3 cut(s) 285, 325, 1015
BssECI CCNNGG 3 cut(s) 14, 125, 857
BssMI GATC 7 cut(s) 10, 73, 80, 202, 580, 739, 1032
BssNAI GTATAC 1 cut(s) 328
BssNI GRCGYC 1 cut(s) 942
BssT1I CCWWGG 1 cut(s) 857
Bst1107I GTATAC 1 cut(s) 328
Bst2UI CCWGG 4 cut(s) 93, 126, 614, 992
Bst4CI ACNGT 4 cut(s) 276, 670, 846, 866
BstACI GRCGYC 1 cut(s) 942
BstAPI GCANNNNNTGC 1 cut(s) 636
BstC8I GCNNGC 4 cut(s) 448, 452, 808, 812
BstDEI CTNAG 6 cut(s) 308, 357, 483, 512, 526, 891
BstEII GGTNACC 1 cut(s) 932
BstENI CCTNNNNNAGG 1 cut(s) 548
BstF5I GGATG 3 cut(s) 143, 630, 904
BstKTI GATC 7 cut(s) 13, 76, 83, 205, 583, 742, 1035
BstMAI GTCTC 4 cut(s) 239, 296, 416, 933
BstMBI GATC 7 cut(s) 10, 73, 80, 202, 580, 739, 1032
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 5 cut(s) 44, 161, 539, 636, 955
BstNI CCWGG 4 cut(s) 93, 126, 614, 992
BstNSI RCATGY 1 cut(s) 454
BstPI GGTNACC 1 cut(s) 932
BstSCI CCNGG 5 cut(s) 91, 124, 159, 612, 990
BstSLI GKGCMC 2 cut(s) 544, 990
BstV1I GCAGC 3 cut(s) 36, 623, 713
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BstZ17I GTATAC 1 cut(s) 328
Bsu15I ATCGAT 1 cut(s) 1035
Bsu36I CCTNAGG 1 cut(s) 308
BsuRI GGCC 2 cut(s) 164, 542
BsuTUI ATCGAT 1 cut(s) 1035
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 3 cut(s) 143, 630, 904
BtsI GCAGTG 2 cut(s) 33, 625
BtsIMutI CAGTG 7 cut(s) 33, 292, 407, 480, 625, 871, 1008
Cac8I GCNNGC 4 cut(s) 448, 452, 808, 812
CciI TCATGA 1 cut(s) 502
Cfr13I GGNCC 3 cut(s) 540, 541, 854
ClaI ATCGAT 1 cut(s) 1035
CseI GACGC 1 cut(s) 950
CsiI ACCWGGT 1 cut(s) 990
Csp6I GTAC 2 cut(s) 210, 1027
CspCI CAANNNNNGTGG 2 cut(s) 651, 686
CviAII CATG 8 cut(s) 121, 295, 451, 503, 640, 761, 946, 998
CviQI GTAC 2 cut(s) 210, 1027
DdeI CTNAG 6 cut(s) 308, 357, 483, 512, 526, 891
DpnI GATC 7 cut(s) 12, 75, 82, 204, 582, 741, 1034
DpnII GATC 7 cut(s) 10, 73, 80, 202, 580, 739, 1032
EaeI YGGCCR 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 857
Eco24I GRGCYC 1 cut(s) 544
Eco31I GGTCTC 2 cut(s) 239, 296
Eco47I GGWCC 1 cut(s) 854
Eco57I CTGAAG 1 cut(s) 266
Eco81I CCTNAGG 1 cut(s) 308
Eco88I CYCGRG 1 cut(s) 213
Eco91I GGTNACC 1 cut(s) 932
EcoNI CCTNNNNNAGG 1 cut(s) 548
EcoO109I RGGNCCY 2 cut(s) 540, 541
EcoO65I GGTNACC 1 cut(s) 932
EcoRI GAATTC 1 cut(s) 693
EcoRII CCWGG 4 cut(s) 91, 124, 612, 990
EcoT14I CCWWGG 1 cut(s) 857
EcoT38I GRGCYC 1 cut(s) 544
ErhI CCWWGG 1 cut(s) 857
Esp3I CGTCTC 1 cut(s) 933
FaeI CATG 8 cut(s) 124, 298, 454, 506, 643, 764, 949, 1001
FaqI GGGAC 2 cut(s) 726, 875
FatI CATG 8 cut(s) 120, 294, 450, 502, 639, 760, 945, 997
FauI CCCGC 2 cut(s) 815, 942
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 3 cut(s) 25, 637, 727
FokI GGATG 3 cut(s) 130, 617, 891
FriOI GRGCYC 1 cut(s) 544
Fsp4HI GCNGC 3 cut(s) 25, 637, 727
FspBI CTAG 6 cut(s) 419, 447, 545, 605, 1019, 1042
GluI GCNGC 3 cut(s) 25, 637, 727
HaeIII GGCC 2 cut(s) 164, 542
HapII CCGG 1 cut(s) 161
HgaI GACGC 1 cut(s) 950
Hin1I GRCGYC 1 cut(s) 942
Hin1II CATG 8 cut(s) 124, 298, 454, 506, 643, 764, 949, 1001
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 2 cut(s) 59, 714
HpaII CCGG 1 cut(s) 161
HphI GGTGA 4 cut(s) 75, 552, 944, 996
Hpy166II GTNNAC 2 cut(s) 328, 342
Hpy188I TCNGA 5 cut(s) 15, 133, 443, 515, 699
Hpy8I GTNNAC 2 cut(s) 328, 342
Hpy99I CGWCG 1 cut(s) 210
HpyAV CCTTC 6 cut(s) 62, 162, 241, 544, 810, 863
HpyCH4III ACNGT 4 cut(s) 276, 670, 846, 866
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 5 cut(s) 381, 630, 639, 729, 958
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 161, 539, 636, 955
HpyF3I CTNAG 6 cut(s) 308, 357, 483, 512, 526, 891
HpySE526I ACGT 1 cut(s) 261
Hsp92I GRCGYC 1 cut(s) 942
Hsp92II CATG 8 cut(s) 124, 298, 454, 506, 643, 764, 949, 1001
Kzo9I GATC 7 cut(s) 10, 73, 80, 202, 580, 739, 1032
LmnI GCTCC 3 cut(s) 193, 309, 1015
Lsp1109I GCAGC 3 cut(s) 36, 623, 713
LweI GCATC 2 cut(s) 639, 869
MabI ACCWGGT 1 cut(s) 990
MaeI CTAG 6 cut(s) 419, 447, 545, 605, 1019, 1042
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 3 cut(s) 554, 754, 932
MalI GATC 7 cut(s) 12, 75, 82, 204, 582, 741, 1034
MboI GATC 7 cut(s) 10, 73, 80, 202, 580, 739, 1032
MboII GAAGA 1 cut(s) 806
MfeI CAATTG 1 cut(s) 42
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 3 cut(s) 535, 544, 990
MluCI AATT 4 cut(s) 42, 588, 693, 730
MlyI GAGTC 1 cut(s) 708
MmeI TCCRAC 2 cut(s) 111, 140
MroXI GAANNNNTTC 1 cut(s) 693
MseI TTAA 5 cut(s) 198, 816, 875, 899, 918
MslI CAYNNNNRTG 3 cut(s) 285, 299, 909
MspA1I CMGCKG 1 cut(s) 636
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 5 cut(s) 93, 126, 161, 614, 992
MunI CAATTG 1 cut(s) 42
MvaI CCWGG 4 cut(s) 93, 126, 614, 992
MwoI GCNNNNNNNGC 5 cut(s) 44, 161, 539, 636, 955
NciI CCSGG 1 cut(s) 161
NdeII GATC 7 cut(s) 10, 73, 80, 202, 580, 739, 1032
NheI GCTAGC 1 cut(s) 446
NlaIII CATG 8 cut(s) 124, 298, 454, 506, 643, 764, 949, 1001
NlaIV GGNNCC 4 cut(s) 255, 541, 542, 989
NmuCI GTSAC 2 cut(s) 554, 932
NspI RCATGY 1 cut(s) 454
PaeI GCATGC 1 cut(s) 454
PagI TCATGA 1 cut(s) 502
PcsI WCGNNNNNNNCGW 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 693
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 3 cut(s) 26, 638, 728
Ple19I CGATCG 1 cut(s) 205
PleI GAGTC 1 cut(s) 708
PpsI GAGTC 1 cut(s) 708
Psp6I CCWGG 4 cut(s) 91, 124, 612, 990
PspEI GGTNACC 1 cut(s) 932
PspGI CCWGG 4 cut(s) 91, 124, 612, 990
PspN4I GGNNCC 4 cut(s) 255, 541, 542, 989
PspOMI GGGCCC 1 cut(s) 540
PspPI GGNCC 3 cut(s) 540, 541, 854
PsrI GAACNNNNNNTAC 6 cut(s) 210, 242, 658, 690, 747, 779
PsuI RGATCY 1 cut(s) 10
PvuI CGATCG 1 cut(s) 205
RsaI GTAC 2 cut(s) 211, 1028
RsaNI GTAC 2 cut(s) 210, 1027
RseI CAYNNNNRTG 3 cut(s) 285, 299, 909
SaqAI TTAA 5 cut(s) 198, 816, 875, 899, 918
SatI GCNGC 3 cut(s) 25, 637, 727
Sau3AI GATC 7 cut(s) 10, 73, 80, 202, 580, 739, 1032
Sau96I GGNCC 3 cut(s) 540, 541, 854
SchI GAGTC 1 cut(s) 708
ScrFI CCNGG 5 cut(s) 93, 126, 161, 614, 992
SduI GDGCHC 3 cut(s) 535, 544, 990
SexAI ACCWGGT 1 cut(s) 990
SfaNI GCATC 2 cut(s) 639, 869
SinI GGWCC 1 cut(s) 854
SmiMI CAYNNNNRTG 3 cut(s) 285, 299, 909
SphI GCATGC 1 cut(s) 454
Sse9I AATT 4 cut(s) 42, 588, 693, 730
SsiI CCGC 4 cut(s) 634, 651, 808, 949
SspMI CTAG 6 cut(s) 419, 447, 545, 605, 1019, 1042
StyD4I CCNGG 5 cut(s) 91, 124, 159, 612, 990
StyI CCWWGG 1 cut(s) 857
TaaI ACNGT 4 cut(s) 276, 670, 846, 866
TaiI ACGT 1 cut(s) 264
TaqI TCGA 3 cut(s) 239, 848, 1035
TaqII GACCGA 1 cut(s) 951
TasI AATT 4 cut(s) 42, 588, 693, 730
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 5 cut(s) 198, 816, 875, 899, 918
Tru9I TTAA 5 cut(s) 198, 816, 875, 899, 918
TscAI CASTG 7 cut(s) 40, 292, 407, 487, 632, 871, 1015
TseFI GTSAC 2 cut(s) 554, 932
TseI GCWGC 3 cut(s) 24, 636, 726
Tsp45I GTSAC 2 cut(s) 554, 932
TspDTI ATGAA 4 cut(s) 463, 519, 588, 986
TspRI CASTG 7 cut(s) 40, 292, 407, 487, 632, 871, 1015
VpaK11BI GGWCC 1 cut(s) 854
XagI CCTNNNNNAGG 1 cut(s) 548
XapI RAATTY 1 cut(s) 693
XbaI TCTAGA 1 cut(s) 418
XceI RCATGY 1 cut(s) 454
XmiI GTMKAC 1 cut(s) 327
XmnI GAANNNNTTC 1 cut(s) 693
XspI CTAG 6 cut(s) 419, 447, 545, 605, 1019, 1042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.