Rroxscaffold_2G00091120

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013853
Physical Location & Seq
Forward (+)
12765236 .. 12767953
2718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00091120.1

Sequence Viewer

Length: 1101 bp
ATGCCAATGGAGAGAGATCCGAGGAGAGGCAGCAATATCACTGCCTCAATTGCTAACCTTCCAGAATCATTGTTGGGCGATCAACCATCACCACCACCAGGAGGAGGAGGCAGGGCGTTTCCAACCATGCCTGCGTCGGAGTTTGCCCGATCCATTTACGCCGACCCGGCCAGAAGGGAGGCAGAGCAGTTGATTGAGGAGCTTAACGATCGTCGTACCCGAGAACAGGCTCTACAAGTTTCACTTGTACTGAAGGAGGTTCCTGACGTGGCTCTATTACTGTGGCATACCAGTGGTCTCATGTTTATGCTCCTAAGGGAAATAACTGGTGTATACCACCTGATGTCAACCCCAAATCTTACTCAGGAAGTATCAAACCGAGTTTGCAATACCATAACTCTGTTTCAGTGTATAGCTTCTCATCTAGAGACAAGAAAGCCATTTATCAGAGCTAGCATGCCATTGTATCTCTACCCTTTCATTGGCACTGAGAACAAGGACAAGCCTCATGAATATCTCAGACTATCCAGCTTAGGTGCTCTTGGGGCCCTAGTGAAGGGTCACCCACCAAATAGAGATGAAGTAGATCCAGAAATTATACACTTCCTCCTAGAAAGCCAGGTATTTTGCCACTGCATCCGCTGCATGGAAGTTGGTGGTGTATTGTCAAGAACTAGGTTTGAGAATATTTATTTTCCTTTGAATGTGCCCGCACATGTTCTGCAGGTGGCTACATTTATAGTTGAAAGAATTCTGACAACTGATGAGGGACTCAACTACTGCTGCAATTTCGGGGATCGGTTTTATGTAGTAACTCATGTTCTTGGAAAGATGACTGATAAGCTTCTTGGAGAACCTTCTGCCCGCCTGCTTAAACTTATCATAAAGTGCTTTCTTATACTGTCGAAAGGTCCAAGGGACAGTGAAGGTTTAAGATGCTGTATTCCTAAGAGCTTAACCCATCCCAATGTTATTAACCTCCTCTCTGGTGACCGAGACGCCATGCAGGGTCTGCAACAGCTCTTGAAAAATGTTTCAAATGGGCACCAGGTTCATGTATCACCCACTGGGGAGCTAGTTGGGTACTTGATTGATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

366

Amino Acids

40.86

Weight (kDa)

6.64

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rcd1 PF04078 64 - 225 6e-49 Cell differentiation family, Rcd1-like
Rcd1 PF04078 243 - 345 6.6e-25 Cell differentiation family, Rcd1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013853)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12980
fragaria_vesca FvH4_6g42770 FvH4_6g42770
malus_domestica MD09G1071800.v1.1
prunus_persica Prupe.3G214100_v2.0.a1 Prupe.3G214100_v2.0.a1
pyrus_communis pycom09g03440
rosa_chinensis RchiOBHm_Chr2g0158671
rosa_laevigata RLG00000021105
rosa_multiflora Rmu_sc0004188.1_g000011
rosa_roxburghii Rroxscaffold_2G00091120
rosa_rugosa Rorug02G0471300
rosa_samantha Rh2AG537100 Rh2BG550300 Rh2CG520800 Rh2DG559900
rosa_wichuraiana Rw2G044470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 715
Acc36I ACCTGC 1 cut(s) 715
AccB1I GGYRCC 1 cut(s) 1044
AccI GTMKAC 1 cut(s) 333
AciI CCGC 3 cut(s) 640, 711, 865
AclWI GGATC 4 cut(s) 11, 144, 581, 804
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 750
AcuI CTGAAG 1 cut(s) 272
AcyI GRCGYC 1 cut(s) 999
AfaI GTAC 3 cut(s) 217, 249, 1085
AfiI CCNNNNNNNGG 8 cut(s) 26, 98, 101, 104, 226, 482, 556, 646
AflIII ACRYGT 1 cut(s) 715
AgsI TTSAA 4 cut(s) 703, 746, 1027, 1038
AjiI CACGTC 1 cut(s) 268
AjnI CCWGG 3 cut(s) 97, 618, 1047
AluBI AGCT 8 cut(s) 202, 416, 452, 531, 844, 954, 1021, 1075
AluI AGCT 8 cut(s) 202, 416, 452, 531, 844, 954, 1021, 1075
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 3 cut(s) 302, 422, 990
AlwI GGATC 4 cut(s) 11, 144, 581, 804
AlwNI CAGNNNCTG 1 cut(s) 1012
Ama87I CYCGRG 1 cut(s) 219
AoxI GGCC 2 cut(s) 168, 546
ApaI GGGCCC 1 cut(s) 550
ApeKI GCWGC 3 cut(s) 30, 642, 783
ApoI RAATTY 1 cut(s) 750
Asp700I GAANNNNTTC 1 cut(s) 750
AspS9I GGNCC 3 cut(s) 546, 547, 911
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 4 cut(s) 81, 554, 1001, 1053
AsuNHI GCTAGC 1 cut(s) 452
AvaI CYCGRG 1 cut(s) 219
AvaII GGWCC 1 cut(s) 911
AxyI CCTNAGG 1 cut(s) 314
BaeGI GKGCMC 3 cut(s) 550, 711, 1047
BanI GGYRCC 1 cut(s) 1044
BanII GRGCYC 1 cut(s) 550
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 3 cut(s) 42, 629, 770
BccI CCATC 3 cut(s) 94, 969, 1088
BciT130I CCWGG 3 cut(s) 99, 620, 1049
BcnI CCSGG 1 cut(s) 167
BcoDI GTCTC 3 cut(s) 302, 422, 990
BfaI CTAG 7 cut(s) 425, 453, 551, 611, 675, 1076, 1099
BfmI CTRYAG 1 cut(s) 722
BfuAI ACCTGC 1 cut(s) 715
BglI GCCNNNNNGGC 1 cut(s) 167
BisI GCNGC 3 cut(s) 31, 643, 784
BlsI GCNGC 3 cut(s) 32, 644, 785
Bme1390I CCNGG 4 cut(s) 99, 167, 620, 1049
Bme18I GGWCC 1 cut(s) 911
BmeT110I CYCGRG 1 cut(s) 219
BmgBI CACGTC 1 cut(s) 268
BmgT120I GGNCC 3 cut(s) 546, 547, 911
BmiI GGNNCC 4 cut(s) 261, 547, 548, 1046
BmrFI CCNGG 4 cut(s) 99, 167, 620, 1049
BmrI ACTGGG 1 cut(s) 1077
BmsI GCATC 2 cut(s) 645, 926
BmtI GCTAGC 1 cut(s) 456
BmuI ACTGGG 1 cut(s) 1077
Bpu10I CCTNAGC 1 cut(s) 532
BpuMI CCSGG 1 cut(s) 167
BsaHI GRCGYC 1 cut(s) 999
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 2 cut(s) 20, 914
BsaXI ACNNNNNCTCC 2 cut(s) 591, 621
Bsc4I CCNNNNNNNGG 8 cut(s) 26, 98, 101, 104, 226, 482, 556, 646
Bse1I ACTGG 3 cut(s) 291, 331, 1072
Bse21I CCTNAGG 1 cut(s) 314
BseBI CCWGG 3 cut(s) 99, 620, 1049
BseDI CCNNGG 2 cut(s) 20, 914
BseGI GGATG 2 cut(s) 636, 961
BseLI CCNNNNNNNGG 8 cut(s) 26, 98, 101, 104, 226, 482, 556, 646
BseMII CTCAG 3 cut(s) 377, 480, 532
BseNI ACTGG 3 cut(s) 291, 331, 1072
BseRI GAGGAG 5 cut(s) 37, 117, 120, 212, 971
BseSI GKGCMC 3 cut(s) 550, 711, 1047
BseXI GCAGC 3 cut(s) 42, 629, 770
Bsh1285I CGRYCG 1 cut(s) 211
BshFI GGCC 2 cut(s) 170, 548
BshNI GGYRCC 1 cut(s) 1044
BsiEI CGRYCG 1 cut(s) 211
BsiHKAI GWGCWC 1 cut(s) 541
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 2 cut(s) 783, 932
BslI CCNNNNNNNGG 8 cut(s) 26, 98, 101, 104, 226, 482, 556, 646
BsmAI GTCTC 3 cut(s) 302, 422, 990
BsmBI CGTCTC 1 cut(s) 990
BsmFI GGGAC 2 cut(s) 783, 932
BsnI GGCC 2 cut(s) 170, 548
Bso31I GGTCTC 1 cut(s) 302
BsoBI CYCGRG 1 cut(s) 219
Bsp120I GGGCCC 1 cut(s) 546
Bsp1286I GDGCHC 4 cut(s) 541, 550, 711, 1047
Bsp143I GATC 6 cut(s) 16, 79, 149, 208, 586, 796
BspACI CCGC 3 cut(s) 640, 711, 865
BspANI GGCC 2 cut(s) 170, 548
BspCNI CTCAG 3 cut(s) 376, 481, 531
BspHI TCATGA 1 cut(s) 508
BspLI GGNNCC 4 cut(s) 261, 547, 548, 1046
BspMAI CTGCAG 1 cut(s) 726
BspMI ACCTGC 1 cut(s) 715
BspOI GCTAGC 1 cut(s) 456
BspPI GGATC 4 cut(s) 11, 144, 581, 804
BspT107I GGYRCC 1 cut(s) 1044
BspTNI GGTCTC 1 cut(s) 302
BsrI ACTGG 3 cut(s) 291, 331, 1072
BssECI CCNNGG 2 cut(s) 20, 914
BssMI GATC 6 cut(s) 16, 79, 149, 208, 586, 796
BssNAI GTATAC 1 cut(s) 334
BssNI GRCGYC 1 cut(s) 999
BssT1I CCWWGG 1 cut(s) 914
Bst1107I GTATAC 1 cut(s) 334
Bst2UI CCWGG 3 cut(s) 99, 620, 1049
Bst4CI ACNGT 3 cut(s) 282, 903, 923
BstACI GRCGYC 1 cut(s) 999
BstAPI GCANNNNNTGC 2 cut(s) 642, 1012
BstC8I GCNNGC 6 cut(s) 132, 454, 458, 711, 865, 869
BstDEI CTNAG 6 cut(s) 314, 363, 489, 518, 532, 948
BstEII GGTNACC 2 cut(s) 560, 989
BstENI CCTNNNNNAGG 1 cut(s) 554
BstF5I GGATG 2 cut(s) 636, 961
BstKTI GATC 6 cut(s) 19, 82, 152, 211, 589, 799
BstMAI GTCTC 3 cut(s) 302, 422, 990
BstMBI GATC 6 cut(s) 16, 79, 149, 208, 586, 796
BstMCI CGRYCG 1 cut(s) 211
BstMWI GCNNNNNNNGC 5 cut(s) 50, 167, 545, 642, 1012
BstNI CCWGG 3 cut(s) 99, 620, 1049
BstNSI RCATGY 2 cut(s) 460, 719
BstPI GGTNACC 2 cut(s) 560, 989
BstSCI CCNGG 4 cut(s) 97, 165, 618, 1047
BstSFI CTRYAG 1 cut(s) 722
BstSLI GKGCMC 3 cut(s) 550, 711, 1047
BstV1I GCAGC 3 cut(s) 42, 629, 770
BstX2I RGATCY 2 cut(s) 16, 586
BstYI RGATCY 2 cut(s) 16, 586
BstZ17I GTATAC 1 cut(s) 334
Bsu36I CCTNAGG 1 cut(s) 314
BsuRI GGCC 2 cut(s) 170, 548
BtrI CACGTC 1 cut(s) 268
BtsCI GGATG 2 cut(s) 636, 961
BtsI GCAGTG 2 cut(s) 39, 631
BtsIMutI CAGTG 7 cut(s) 39, 298, 413, 486, 631, 928, 1065
BveI ACCTGC 1 cut(s) 715
Cac8I GCNNGC 6 cut(s) 132, 454, 458, 711, 865, 869
CaiI CAGNNNCTG 1 cut(s) 1012
CciI TCATGA 1 cut(s) 508
Cfr13I GGNCC 3 cut(s) 546, 547, 911
CseI GACGC 2 cut(s) 123, 1007
CsiI ACCWGGT 1 cut(s) 1047
Csp6I GTAC 3 cut(s) 216, 248, 1084
CviAII CATG 9 cut(s) 127, 301, 457, 509, 646, 716, 818, 1003, 1055
CviQI GTAC 3 cut(s) 216, 248, 1084
DdeI CTNAG 6 cut(s) 314, 363, 489, 518, 532, 948
DpnI GATC 6 cut(s) 18, 81, 151, 210, 588, 798
DpnII GATC 6 cut(s) 16, 79, 149, 208, 586, 796
EaeI YGGCCR 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 914
Eco24I GRGCYC 1 cut(s) 550
Eco31I GGTCTC 1 cut(s) 302
Eco47I GGWCC 1 cut(s) 911
Eco57I CTGAAG 1 cut(s) 272
Eco81I CCTNAGG 1 cut(s) 314
Eco88I CYCGRG 1 cut(s) 219
Eco91I GGTNACC 2 cut(s) 560, 989
EcoNI CCTNNNNNAGG 1 cut(s) 554
EcoO109I RGGNCCY 2 cut(s) 546, 547
EcoO65I GGTNACC 2 cut(s) 560, 989
EcoRI GAATTC 1 cut(s) 750
EcoRII CCWGG 3 cut(s) 97, 618, 1047
EcoT14I CCWWGG 1 cut(s) 914
EcoT38I GRGCYC 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 914
Esp3I CGTCTC 1 cut(s) 990
FaeI CATG 9 cut(s) 130, 304, 460, 512, 649, 719, 821, 1006, 1058
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FaqI GGGAC 2 cut(s) 783, 932
FatI CATG 9 cut(s) 126, 300, 456, 508, 645, 715, 817, 1002, 1054
FauI CCCGC 2 cut(s) 718, 872
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 3 cut(s) 31, 643, 784
FokI GGATG 2 cut(s) 623, 948
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 3 cut(s) 31, 643, 784
FspBI CTAG 7 cut(s) 425, 453, 551, 611, 675, 1076, 1099
GluI GCNGC 3 cut(s) 31, 643, 784
HaeIII GGCC 2 cut(s) 170, 548
HapII CCGG 1 cut(s) 167
HgaI GACGC 2 cut(s) 123, 1007
Hin1I GRCGYC 1 cut(s) 999
Hin1II CATG 9 cut(s) 130, 304, 460, 512, 649, 719, 821, 1006, 1058
HincII GTYRAC 1 cut(s) 348
HindII GTYRAC 1 cut(s) 348
HindIII AAGCTT 1 cut(s) 842
HinfI GANTC 2 cut(s) 65, 771
HpaII CCGG 1 cut(s) 167
HphI GGTGA 4 cut(s) 81, 554, 1001, 1053
Hpy166II GTNNAC 2 cut(s) 334, 348
Hpy188I TCNGA 5 cut(s) 21, 139, 449, 521, 756
Hpy188III TCNNGA 8 cut(s) 62, 263, 365, 425, 509, 590, 669, 1024
Hpy8I GTNNAC 2 cut(s) 334, 348
Hpy99I CGWCG 2 cut(s) 139, 216
HpyAV CCTTC 6 cut(s) 68, 168, 247, 550, 867, 920
HpyCH4III ACNGT 3 cut(s) 282, 903, 923
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 7 cut(s) 387, 636, 645, 724, 786, 1006, 1015
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 167, 545, 642, 1012
HpyF3I CTNAG 6 cut(s) 314, 363, 489, 518, 532, 948
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 1 cut(s) 999
Hsp92II CATG 9 cut(s) 130, 304, 460, 512, 649, 719, 821, 1006, 1058
Kzo9I GATC 6 cut(s) 16, 79, 149, 208, 586, 796
LmnI GCTCC 3 cut(s) 199, 315, 1072
Lsp1109I GCAGC 3 cut(s) 42, 629, 770
LweI GCATC 2 cut(s) 645, 926
MabI ACCWGGT 1 cut(s) 1047
MaeI CTAG 7 cut(s) 425, 453, 551, 611, 675, 1076, 1099
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 3 cut(s) 560, 811, 989
MalI GATC 6 cut(s) 18, 81, 151, 210, 588, 798
MboI GATC 6 cut(s) 16, 79, 149, 208, 586, 796
MfeI CAATTG 1 cut(s) 48
MflI RGATCY 2 cut(s) 16, 586
MhlI GDGCHC 4 cut(s) 541, 550, 711, 1047
MluCI AATT 4 cut(s) 48, 594, 750, 787
MlyI GAGTC 1 cut(s) 765
MmeI TCCRAC 2 cut(s) 117, 146
MroXI GAANNNNTTC 1 cut(s) 750
MseI TTAA 5 cut(s) 204, 873, 932, 956, 975
MslI CAYNNNNRTG 3 cut(s) 291, 305, 966
MspA1I CMGCKG 1 cut(s) 642
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 4 cut(s) 99, 167, 620, 1049
MunI CAATTG 1 cut(s) 48
MvaI CCWGG 3 cut(s) 99, 620, 1049
MwoI GCNNNNNNNGC 5 cut(s) 50, 167, 545, 642, 1012
NciI CCSGG 1 cut(s) 167
NdeII GATC 6 cut(s) 16, 79, 149, 208, 586, 796
NheI GCTAGC 1 cut(s) 452
NlaIII CATG 9 cut(s) 130, 304, 460, 512, 649, 719, 821, 1006, 1058
NlaIV GGNNCC 4 cut(s) 261, 547, 548, 1046
NmuCI GTSAC 2 cut(s) 560, 989
NspI RCATGY 2 cut(s) 460, 719
PaeI GCATGC 1 cut(s) 460
PagI TCATGA 1 cut(s) 508
PaqCI CACCTGC 1 cut(s) 715
PciI ACATGT 1 cut(s) 715
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 750
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 3 cut(s) 32, 644, 785
Ple19I CGATCG 1 cut(s) 211
PleI GAGTC 1 cut(s) 765
PpsI GAGTC 1 cut(s) 765
PscI ACATGT 1 cut(s) 715
Psp6I CCWGG 3 cut(s) 97, 618, 1047
PspEI GGTNACC 2 cut(s) 560, 989
PspGI CCWGG 3 cut(s) 97, 618, 1047
PspN4I GGNNCC 4 cut(s) 261, 547, 548, 1046
PspOMI GGGCCC 1 cut(s) 546
PspPI GGNCC 3 cut(s) 546, 547, 911
PsrI GAACNNNNNNTAC 4 cut(s) 216, 248, 804, 836
PstI CTGCAG 1 cut(s) 726
PstNI CAGNNNCTG 1 cut(s) 1012
PsuI RGATCY 2 cut(s) 16, 586
PvuI CGATCG 1 cut(s) 211
RsaI GTAC 3 cut(s) 217, 249, 1085
RsaNI GTAC 3 cut(s) 216, 248, 1084
RseI CAYNNNNRTG 3 cut(s) 291, 305, 966
SaqAI TTAA 5 cut(s) 204, 873, 932, 956, 975
SatI GCNGC 3 cut(s) 31, 643, 784
Sau3AI GATC 6 cut(s) 16, 79, 149, 208, 586, 796
Sau96I GGNCC 3 cut(s) 546, 547, 911
SchI GAGTC 1 cut(s) 765
ScrFI CCNGG 4 cut(s) 99, 167, 620, 1049
SduI GDGCHC 4 cut(s) 541, 550, 711, 1047
SexAI ACCWGGT 1 cut(s) 1047
SfaNI GCATC 2 cut(s) 645, 926
SfcI CTRYAG 1 cut(s) 722
SinI GGWCC 1 cut(s) 911
SmiMI CAYNNNNRTG 3 cut(s) 291, 305, 966
SphI GCATGC 1 cut(s) 460
Sse9I AATT 4 cut(s) 48, 594, 750, 787
SsiI CCGC 3 cut(s) 640, 711, 865
SspI AATATT 1 cut(s) 688
SspMI CTAG 7 cut(s) 425, 453, 551, 611, 675, 1076, 1099
StyD4I CCNGG 4 cut(s) 97, 165, 618, 1047
StyI CCWWGG 1 cut(s) 914
TaaI ACNGT 3 cut(s) 282, 903, 923
TaiI ACGT 1 cut(s) 270
TaqI TCGA 1 cut(s) 905
TaqII GACCGA 1 cut(s) 1008
TasI AATT 4 cut(s) 48, 594, 750, 787
TatI WGTACW 1 cut(s) 247
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 5 cut(s) 204, 873, 932, 956, 975
Tru9I TTAA 5 cut(s) 204, 873, 932, 956, 975
TscAI CASTG 7 cut(s) 46, 298, 413, 493, 638, 928, 1072
TseFI GTSAC 2 cut(s) 560, 989
TseI GCWGC 3 cut(s) 30, 642, 783
Tsp45I GTSAC 2 cut(s) 560, 989
TspDTI ATGAA 4 cut(s) 469, 525, 594, 1043
TspRI CASTG 7 cut(s) 46, 298, 413, 493, 638, 928, 1072
VpaK11BI GGWCC 1 cut(s) 911
XagI CCTNNNNNAGG 1 cut(s) 554
XapI RAATTY 1 cut(s) 750
XbaI TCTAGA 1 cut(s) 424
XceI RCATGY 2 cut(s) 460, 719
XmiI GTMKAC 1 cut(s) 333
XmnI GAANNNNTTC 1 cut(s) 750
XspI CTAG 7 cut(s) 425, 453, 551, 611, 675, 1076, 1099
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.