FvH4_6g42770

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013853
Physical Location & Seq
Reverse (-)
33241361 .. 33244131
2771 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42770.t1

Sequence Viewer

Length: 1131 bp
CACCAAATCACGTCATATTGGCCATGCTATAAATCGCATCGAGTCCAACGCCTCCATACACAAATCGCTTCTGACTCTCACTATCAGTCTCACTCTCCTCCTCTACAGAACCTGCTCATGAGTCCAACTACACCAATGGAGAGAGATCTGAGGCTTCCAGAATCATTGTTGGGTGATCAACCAGGAGGAGGAGGTAGGGCTAGTCCAACTCTACCTGAGTCGGAGTTTGCCGAACCCATGAACGTAGAGCAGTTGATTCAGAAGCTTCATGATCGTCGTACCCGAGAACAGGCTCTACACAATCTCTCCCAGCTGAAGGATCAGCTTCCTGAGGTGGCTCTATTACTTTGGCATACCTGTGGTATCATGTTTGTGCTCCTCAAGGAAATAACTGGTGTATACAACCTGATCTCAACCCCAAATCTTTCTCAGGAAGTATCAAACCGAGTTTGCGATACTATAACTTTGTTCCAGCAGTGCATAGCTTCTCATCTAGATACAAGAAAGCCATTCATCAGAGCTTACTTGCCATTGTATCTCTACCCTTTCATTAGCACTGAGAGCAGAGACAAGCCTCATGAATATCTCAGACTATCTAGCTTAGGTGCTATTGGGGCACTAGTGAAGAGTCACCCGCCAAATCGAGATGAAGTCGATCCAGAAATTATACACTTCCTCCTAGAGAGCCAGATACTTTGCCTCTGCATCCGCTGCATGGAGGTCGGCACTGTATTGTCAAGAACTGTGGCTACATTTATAGTTGAAAGAATTCTGTCAACTGATGCGGGACTCAACTACTGTTGCAATTTCGGCGATCGGTTTTATGTTACTACTAGTGTTCTTCGAAGGATGACTGATAAGCTTGTTGAAGAACCTTCTCGCCGGCTGCTTAAACTTATCATTAAGTGTTTTATTGAACTGTCCAAGGGTCCAAGTCTGTGCAGGGACAATGAGGGTCTAAGATGCTGTATTCCTAGGAGCTTAACTTATCCTGAGATTGTTAACCTCCTCTCTGATGACGGAGACGGCATGCGGGGTCTGCAACAGCTCTTGAAAAATGTTCAGGCTCATGTATCATCCACTGGGGACCTAGTATTGGTCACTTCATACAAGGCTGAACTAAATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

377

Amino Acids

42.6

Weight (kDa)

6.71

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rcd1 PF04078 85 - 354 1.4e-82 Cell differentiation family, Rcd1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013853)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12980
fragaria_vesca FvH4_6g42770 FvH4_6g42770
malus_domestica MD09G1071800.v1.1
prunus_persica Prupe.3G214100_v2.0.a1 Prupe.3G214100_v2.0.a1
pyrus_communis pycom09g03440
rosa_chinensis RchiOBHm_Chr2g0158671
rosa_laevigata RLG00000021105
rosa_multiflora Rmu_sc0004188.1_g000011
rosa_roxburghii Rroxscaffold_2G00091120
rosa_rugosa Rorug02G0471300
rosa_samantha Rh2AG537100 Rh2BG550300 Rh2CG520800 Rh2DG559900
rosa_wichuraiana Rw2G044470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 120
AccI GTMKAC 1 cut(s) 399
AciI CCGC 4 cut(s) 635, 709, 785, 1033
AclWI GGATC 2 cut(s) 327, 650
AcoI YGGCCR 1 cut(s) 20
AcsI RAATTY 1 cut(s) 768
AcuI CTGAAG 1 cut(s) 335
AfaI GTAC 1 cut(s) 280
AfiI CCNNNNNNNGG 5 cut(s) 188, 289, 316, 715, 1096
AgsI TTSAA 4 cut(s) 764, 869, 917, 1054
AhlI ACTAGT 2 cut(s) 619, 833
AjiI CACGTC 1 cut(s) 12
AjnI CCWGG 1 cut(s) 181
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 3 cut(s) 93, 561, 1017
AlwI GGATC 2 cut(s) 327, 650
AlwNI CAGNNNCTG 1 cut(s) 112
Ama87I CYCGRG 1 cut(s) 282
AoxI GGCC 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 711, 886
ApoI RAATTY 1 cut(s) 768
Asp700I GAANNNNTTC 1 cut(s) 768
AspA2I CCTAGG 1 cut(s) 974
AspS9I GGNCC 2 cut(s) 929, 1087
AsuHPI GGTGA 2 cut(s) 185, 623
AsuII TTCGAA 1 cut(s) 844
AvaI CYCGRG 1 cut(s) 282
AvaII GGWCC 2 cut(s) 929, 1087
AvrII CCTAGG 1 cut(s) 974
AxyI CCTNAGG 1 cut(s) 330
BaeGI GKGCMC 1 cut(s) 619
BalI TGGCCA 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 378
BbvI GCAGC 2 cut(s) 698, 873
BceAI ACGGC 1 cut(s) 1042
BcgI CGANNNNNNTGC 2 cut(s) 703, 737
BciT130I CCWGG 1 cut(s) 183
BclI TGATCA 1 cut(s) 175
BcoDI GTCTC 3 cut(s) 93, 561, 1017
BcuI ACTAGT 2 cut(s) 619, 833
BfaI CTAG 8 cut(s) 201, 494, 597, 620, 680, 834, 975, 1091
BfmI CTRYAG 1 cut(s) 104
BfuAI ACCTGC 1 cut(s) 120
BglII AGATCT 1 cut(s) 145
BisI GCNGC 2 cut(s) 712, 887
BlnI CCTAGG 1 cut(s) 974
BlsI GCNGC 2 cut(s) 713, 888
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 2 cut(s) 929, 1087
BmeT110I CYCGRG 1 cut(s) 282
BmgBI CACGTC 1 cut(s) 12
BmgT120I GGNCC 2 cut(s) 929, 1087
BmiI GGNNCC 2 cut(s) 930, 1088
BmrFI CCNGG 1 cut(s) 183
BmrI ACTGGG 1 cut(s) 1092
BmsI GCATC 4 cut(s) 46, 714, 772, 953
BmuI ACTGGG 1 cut(s) 1092
Bpu10I CCTNAGC 1 cut(s) 601
Bpu14I TTCGAA 1 cut(s) 844
BpuEI CTTGAG 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 924, 974
BsaXI ACNNNNNCTCC 4 cut(s) 290, 320, 660, 690
Bsc4I CCNNNNNNNGG 5 cut(s) 188, 289, 316, 715, 1096
Bse118I RCCGGY 1 cut(s) 882
Bse1I ACTGG 2 cut(s) 397, 1087
Bse21I CCTNAGG 1 cut(s) 330
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 924, 974
BseGI GGATG 3 cut(s) 705, 855, 1076
BseLI CCNNNNNNNGG 5 cut(s) 188, 289, 316, 715, 1096
BseMII CTCAG 7 cut(s) 140, 207, 321, 443, 549, 601, 984
BseNI ACTGG 2 cut(s) 397, 1087
BseRI GAGGAG 6 cut(s) 87, 90, 201, 204, 368, 998
BseSI GKGCMC 1 cut(s) 619
BseXI GCAGC 2 cut(s) 698, 873
BseYI CCCAGC 1 cut(s) 309
BsgI GTGCAG 1 cut(s) 961
Bsh1285I CGRYCG 1 cut(s) 817
BshFI GGCC 1 cut(s) 22
BsiEI CGRYCG 1 cut(s) 817
BsiHKAI GWGCWC 1 cut(s) 378
BsiHKCI CYCGRG 1 cut(s) 282
BsiSI CCGG 1 cut(s) 883
BslFI GGGAC 3 cut(s) 801, 959, 1100
BslI CCNNNNNNNGG 5 cut(s) 188, 289, 316, 715, 1096
BsmAI GTCTC 3 cut(s) 93, 561, 1017
BsmBI CGTCTC 1 cut(s) 1017
BsmFI GGGAC 3 cut(s) 801, 959, 1100
BsnI GGCC 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 282
Bsp119I TTCGAA 1 cut(s) 844
Bsp1286I GDGCHC 2 cut(s) 378, 619
Bsp143I GATC 7 cut(s) 145, 175, 271, 319, 408, 655, 814
BspACI CCGC 4 cut(s) 635, 709, 785, 1033
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 7 cut(s) 141, 208, 322, 442, 550, 600, 985
BspHI TCATGA 3 cut(s) 117, 268, 577
BspLI GGNNCC 2 cut(s) 930, 1088
BspMI ACCTGC 1 cut(s) 120
BspPI GGATC 2 cut(s) 327, 650
BspT104I TTCGAA 1 cut(s) 844
BsrFI RCCGGY 1 cut(s) 882
BsrI ACTGG 2 cut(s) 397, 1087
BssAI RCCGGY 1 cut(s) 882
BssECI CCNNGG 2 cut(s) 924, 974
BssMI GATC 7 cut(s) 145, 175, 271, 319, 408, 655, 814
BssNAI GTATAC 1 cut(s) 400
BssT1I CCWWGG 2 cut(s) 924, 974
Bst1107I GTATAC 1 cut(s) 400
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 4 cut(s) 730, 745, 800, 921
Bst6I CTCTTC 1 cut(s) 620
BstAPI GCANNNNNTGC 1 cut(s) 711
BstBI TTCGAA 1 cut(s) 844
BstC8I GCNNGC 2 cut(s) 884, 1031
BstDEI CTNAG 9 cut(s) 149, 216, 330, 429, 558, 587, 601, 959, 993
BstF5I GGATG 3 cut(s) 705, 855, 1076
BstKTI GATC 7 cut(s) 148, 178, 274, 322, 411, 658, 817
BstMAI GTCTC 3 cut(s) 93, 561, 1017
BstMBI GATC 7 cut(s) 145, 175, 271, 319, 408, 655, 814
BstMCI CGRYCG 1 cut(s) 817
BstMWI GCNNNNNNNGC 5 cut(s) 561, 614, 711, 810, 1039
BstNI CCWGG 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 1033
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 104
BstSLI GKGCMC 1 cut(s) 619
BstV1I GCAGC 2 cut(s) 698, 873
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BstZ17I GTATAC 1 cut(s) 400
Bsu36I CCTNAGG 1 cut(s) 330
BsuRI GGCC 1 cut(s) 22
BtrI CACGTC 1 cut(s) 12
BtsCI GGATG 3 cut(s) 705, 855, 1076
BtsI GCAGTG 1 cut(s) 482
BtsIMutI CAGTG 4 cut(s) 482, 555, 726, 1080
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 2 cut(s) 884, 1031
CaiI CAGNNNCTG 1 cut(s) 112
CciI TCATGA 3 cut(s) 117, 268, 577
Cfr10I RCCGGY 1 cut(s) 882
Cfr13I GGNCC 2 cut(s) 929, 1087
Csp6I GTAC 1 cut(s) 279
CspCI CAANNNNNGTGG 2 cut(s) 726, 761
CviAII CATG 9 cut(s) 24, 118, 238, 269, 367, 578, 715, 1030, 1070
CviQI GTAC 1 cut(s) 279
DdeI CTNAG 9 cut(s) 149, 216, 330, 429, 558, 587, 601, 959, 993
DpnI GATC 7 cut(s) 147, 177, 273, 321, 410, 657, 816
DpnII GATC 7 cut(s) 145, 175, 271, 319, 408, 655, 814
EaeI YGGCCR 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 620
EarI CTCTTC 1 cut(s) 620
Eco130I CCWWGG 2 cut(s) 924, 974
Eco47I GGWCC 2 cut(s) 929, 1087
Eco57I CTGAAG 1 cut(s) 335
Eco81I CCTNAGG 1 cut(s) 330
Eco88I CYCGRG 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 1087
EcoRI GAATTC 1 cut(s) 768
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 2 cut(s) 924, 974
ErhI CCWWGG 2 cut(s) 924, 974
Esp3I CGTCTC 1 cut(s) 1017
FaeI CATG 9 cut(s) 27, 121, 241, 272, 370, 581, 718, 1033, 1073
FaqI GGGAC 3 cut(s) 801, 959, 1100
FatI CATG 9 cut(s) 23, 117, 237, 268, 366, 577, 714, 1029, 1069
FauI CCCGC 3 cut(s) 642, 778, 1026
FbaI TGATCA 1 cut(s) 175
FblI GTMKAC 1 cut(s) 399
Fnu4HI GCNGC 2 cut(s) 712, 887
FokI GGATG 3 cut(s) 692, 862, 1063
Fsp4HI GCNGC 2 cut(s) 712, 887
FspBI CTAG 8 cut(s) 201, 494, 597, 620, 680, 834, 975, 1091
GluI GCNGC 2 cut(s) 712, 887
GsaI CCCAGC 1 cut(s) 313
HaeIII GGCC 1 cut(s) 22
HapII CCGG 1 cut(s) 883
Hin1II CATG 9 cut(s) 27, 121, 241, 272, 370, 581, 718, 1033, 1073
HincII GTYRAC 2 cut(s) 777, 1003
HindII GTYRAC 2 cut(s) 777, 1003
HindIII AAGCTT 2 cut(s) 263, 860
HinfI GANTC 8 cut(s) 42, 74, 121, 161, 218, 256, 628, 789
HpaI GTTAAC 1 cut(s) 1003
HpaII CCGG 1 cut(s) 883
HphI GGTGA 2 cut(s) 185, 623
Hpy166II GTNNAC 3 cut(s) 400, 777, 1003
Hpy188I TCNGA 7 cut(s) 73, 150, 223, 261, 518, 590, 1015
Hpy8I GTNNAC 3 cut(s) 400, 777, 1003
Hpy99I CGWCG 1 cut(s) 279
HpyAV CCTTC 3 cut(s) 310, 840, 885
HpyCH4III ACNGT 4 cut(s) 730, 745, 800, 921
HpyCH4IV ACGT 2 cut(s) 11, 243
HpyCH4V TGCA 6 cut(s) 480, 705, 714, 804, 942, 1042
HpyF10VI GCNNNNNNNGC 5 cut(s) 561, 614, 711, 810, 1039
HpyF3I CTNAG 9 cut(s) 149, 216, 330, 429, 558, 587, 601, 959, 993
HpySE526I ACGT 2 cut(s) 11, 243
Hsp92II CATG 9 cut(s) 27, 121, 241, 272, 370, 581, 718, 1033, 1073
KroI GCCGGC 1 cut(s) 882
KroNI GCCGGC 1 cut(s) 884
Ksp22I TGATCA 1 cut(s) 175
KspAI GTTAAC 1 cut(s) 1003
Kzo9I GATC 7 cut(s) 145, 175, 271, 319, 408, 655, 814
LmnI GCTCC 2 cut(s) 381, 978
Lsp1109I GCAGC 2 cut(s) 698, 873
LweI GCATC 4 cut(s) 46, 714, 772, 953
MaeI CTAG 8 cut(s) 201, 494, 597, 620, 680, 834, 975, 1091
MaeII ACGT 2 cut(s) 11, 243
MaeIII GTNAC 3 cut(s) 629, 826, 1099
MalI GATC 7 cut(s) 147, 177, 273, 321, 410, 657, 816
MboI GATC 7 cut(s) 145, 175, 271, 319, 408, 655, 814
MboII GAAGA 3 cut(s) 637, 833, 881
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 2 cut(s) 378, 619
MlsI TGGCCA 1 cut(s) 22
MluCI AATT 3 cut(s) 663, 768, 805
MluNI TGGCCA 1 cut(s) 22
MlyI GAGTC 6 cut(s) 51, 68, 130, 227, 637, 783
MmeI TCCRAC 4 cut(s) 70, 149, 201, 230
Mox20I TGGCCA 1 cut(s) 22
MroNI GCCGGC 1 cut(s) 882
MroXI GAANNNNTTC 1 cut(s) 768
MscI TGGCCA 1 cut(s) 22
MseI TTAA 4 cut(s) 891, 903, 983, 1002
MslI CAYNNNNRTG 2 cut(s) 357, 371
Msp20I TGGCCA 1 cut(s) 22
MspA1I CMGCKG 2 cut(s) 313, 711
MspI CCGG 1 cut(s) 883
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 5 cut(s) 561, 614, 711, 810, 1039
NaeI GCCGGC 1 cut(s) 884
NdeII GATC 7 cut(s) 145, 175, 271, 319, 408, 655, 814
NgoMIV GCCGGC 1 cut(s) 882
NlaIII CATG 9 cut(s) 27, 121, 241, 272, 370, 581, 718, 1033, 1073
NlaIV GGNNCC 2 cut(s) 930, 1088
NmuCI GTSAC 2 cut(s) 629, 1099
NspI RCATGY 1 cut(s) 1033
NspV TTCGAA 1 cut(s) 844
PaeI GCATGC 1 cut(s) 1033
PagI TCATGA 3 cut(s) 117, 268, 577
PcsI WCGNNNNNNNCGW 1 cut(s) 280
PdiI GCCGGC 1 cut(s) 884
PdmI GAANNNNTTC 1 cut(s) 768
PfeI GAWTC 2 cut(s) 161, 256
PkrI GCNGC 2 cut(s) 713, 888
Ple19I CGATCG 1 cut(s) 817
PleI GAGTC 6 cut(s) 50, 68, 129, 226, 636, 783
PpsI GAGTC 6 cut(s) 50, 68, 129, 226, 636, 783
PpuMI RGGWCCY 1 cut(s) 1087
Psp5II RGGWCCY 1 cut(s) 1087
Psp6I CCWGG 1 cut(s) 181
PspFI CCCAGC 1 cut(s) 309
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 930, 1088
PspPI GGNCC 2 cut(s) 929, 1087
PspPPI RGGWCCY 1 cut(s) 1087
PsrI GAACNNNNNNTAC 4 cut(s) 279, 311, 733, 765
PstNI CAGNNNCTG 1 cut(s) 112
PsuI RGATCY 1 cut(s) 145
PvuI CGATCG 1 cut(s) 817
PvuII CAGCTG 1 cut(s) 313
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
RseI CAYNNNNRTG 2 cut(s) 357, 371
SaqAI TTAA 4 cut(s) 891, 903, 983, 1002
SatI GCNGC 2 cut(s) 712, 887
Sau3AI GATC 7 cut(s) 145, 175, 271, 319, 408, 655, 814
Sau96I GGNCC 2 cut(s) 929, 1087
SchI GAGTC 6 cut(s) 51, 68, 130, 227, 637, 783
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 2 cut(s) 378, 619
SfaNI GCATC 4 cut(s) 46, 714, 772, 953
SfcI CTRYAG 1 cut(s) 104
SfuI TTCGAA 1 cut(s) 844
SinI GGWCC 2 cut(s) 929, 1087
SmiMI CAYNNNNRTG 2 cut(s) 357, 371
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SpeI ACTAGT 2 cut(s) 619, 833
SphI GCATGC 1 cut(s) 1033
Sse9I AATT 3 cut(s) 663, 768, 805
SsiI CCGC 4 cut(s) 635, 709, 785, 1033
SspMI CTAG 8 cut(s) 201, 494, 597, 620, 680, 834, 975, 1091
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 2 cut(s) 924, 974
TaaI ACNGT 4 cut(s) 730, 745, 800, 921
TaiI ACGT 2 cut(s) 14, 246
TaqI TCGA 4 cut(s) 40, 643, 654, 844
TasI AATT 3 cut(s) 663, 768, 805
TfiI GAWTC 2 cut(s) 161, 256
Tru1I TTAA 4 cut(s) 891, 903, 983, 1002
Tru9I TTAA 4 cut(s) 891, 903, 983, 1002
TscAI CASTG 4 cut(s) 482, 562, 733, 1087
TseFI GTSAC 2 cut(s) 629, 1099
TseI GCWGC 2 cut(s) 711, 886
Tsp45I GTSAC 2 cut(s) 629, 1099
TspDTI ATGAA 7 cut(s) 254, 257, 502, 538, 594, 663, 1095
TspGWI ACGGA 1 cut(s) 1035
TspRI CASTG 4 cut(s) 482, 562, 733, 1087
VpaK11BI GGWCC 2 cut(s) 929, 1087
XapI RAATTY 1 cut(s) 768
XbaI TCTAGA 1 cut(s) 493
XceI RCATGY 1 cut(s) 1033
XmaJI CCTAGG 1 cut(s) 974
XmiI GTMKAC 1 cut(s) 399
XmnI GAANNNNTTC 1 cut(s) 768
XspI CTAG 8 cut(s) 201, 494, 597, 620, 680, 834, 975, 1091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.