Rmu_sc0004188.1_g000011

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004188.1
OG0013853
Physical Location & Seq
Forward (+)
41918 .. 44614
2697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004188.1_g000011.1.cds

Sequence Viewer

Length: 894 bp
atggagagagatccgaggagaggcagcaatatcactgcctcaattgctaaccttccagaatcattcttgggcgatcaaccatcaccaccaccaggaggaggaggcagggcgtttccaaccatgccagggtcggagtttgcccgatccatttacgccgacccggccagaagggaggtagagcagttgattgaggagcttaacgatcgtcgtacccgagaacaggctctacaaggtctctctaaggcaagcatgccattgtatctctaccctttcattggcactgagaacaaggacaagcctcatgaatatctcagactatccagcttaggtgctcttggggccctagtgaagggtcacccaccaaatagagacgaagttgatccagaaattatacacttcctcctagaaagccaggtattttgccactgcatccgctgcatggaagttggcggtgtattgtcaagaactaggtttgagaatatttatgttcctttgaatgtgcccgcacatgttctgcaggtggctacatttatagttgaaagaattctgacaactgatgagggactcaactactgctgcaatttcggggatcggttttatgtagtaactcatgttcttggaaagatgactgataagcttcttgaagaaccttctgcccgcctgcttaaacttatcataaagtgctttcttatactgtcgagaggtccaagggacagtgaaggtttaagatgctgtattcctaagagcttaacacatcccaatgttattaacctcctctctggtgaccgagacgccatgcggggtctgcaacagctcttgaaaaatgtttcaaatgggggccaggttcatgtatcacccactggggagctagttgggtacttgatcgatggctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

297

Amino Acids

32.96

Weight (kDa)

6.46

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013853)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12980
fragaria_vesca FvH4_6g42770 FvH4_6g42770
malus_domestica MD09G1071800.v1.1
prunus_persica Prupe.3G214100_v2.0.a1 Prupe.3G214100_v2.0.a1
pyrus_communis pycom09g03440
rosa_chinensis RchiOBHm_Chr2g0158671
rosa_laevigata RLG00000021105
rosa_multiflora Rmu_sc0004188.1_g000011
rosa_roxburghii Rroxscaffold_2G00091120
rosa_rugosa Rorug02G0471300
rosa_samantha Rh2AG537100 Rh2BG550300 Rh2CG520800 Rh2DG559900
rosa_wichuraiana Rw2G044470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 508
Acc36I ACCTGC 1 cut(s) 508
AciI CCGC 5 cut(s) 433, 450, 504, 658, 799
AclWI GGATC 4 cut(s) 5, 138, 374, 597
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 1 cut(s) 543
AcyI GRCGYC 1 cut(s) 792
AfaI GTAC 2 cut(s) 211, 878
AfiI CCNNNNNNNGG 9 cut(s) 20, 92, 95, 98, 126, 220, 275, 349, 439
AflIII ACRYGT 1 cut(s) 508
AgsI TTSAA 5 cut(s) 496, 539, 644, 820, 831
AjnI CCWGG 4 cut(s) 91, 124, 411, 840
AluBI AGCT 6 cut(s) 196, 324, 637, 747, 814, 868
AluI AGCT 6 cut(s) 196, 324, 637, 747, 814, 868
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 3 cut(s) 239, 363, 783
AlwI GGATC 4 cut(s) 5, 138, 374, 597
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 3 cut(s) 162, 339, 838
ApaI GGGCCC 1 cut(s) 343
ApeKI GCWGC 3 cut(s) 24, 435, 576
ApoI RAATTY 1 cut(s) 543
Asp700I GAANNNNTTC 1 cut(s) 543
AspS9I GGNCC 4 cut(s) 339, 340, 704, 838
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 4 cut(s) 75, 347, 794, 846
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 1 cut(s) 704
BaeGI GKGCMC 2 cut(s) 343, 504
BanII GRGCYC 1 cut(s) 343
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 3 cut(s) 36, 422, 563
BccI CCATC 2 cut(s) 88, 881
BciT130I CCWGG 4 cut(s) 93, 126, 413, 842
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 3 cut(s) 239, 363, 783
BfaI CTAG 5 cut(s) 344, 404, 468, 869, 892
BfmI CTRYAG 1 cut(s) 515
BfuAI ACCTGC 1 cut(s) 508
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 3 cut(s) 25, 436, 577
BlsI GCNGC 3 cut(s) 26, 437, 578
Bme1390I CCNGG 5 cut(s) 93, 126, 161, 413, 842
Bme18I GGWCC 1 cut(s) 704
BmeT110I CYCGRG 1 cut(s) 213
BmgT120I GGNCC 4 cut(s) 339, 340, 704, 838
BmiI GGNNCC 3 cut(s) 340, 341, 839
BmrFI CCNGG 5 cut(s) 93, 126, 161, 413, 842
BmrI ACTGGG 1 cut(s) 870
BmsI GCATC 2 cut(s) 438, 719
BmuI ACTGGG 1 cut(s) 870
Bpu10I CCTNAGC 1 cut(s) 325
BpuMI CCSGG 1 cut(s) 161
Bsa29I ATCGAT 1 cut(s) 885
BsaHI GRCGYC 1 cut(s) 792
BsaI GGTCTC 1 cut(s) 239
BsaJI CCNNGG 3 cut(s) 14, 125, 707
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 9 cut(s) 20, 92, 95, 98, 126, 220, 275, 349, 439
Bse1I ACTGG 1 cut(s) 865
BseBI CCWGG 4 cut(s) 93, 126, 413, 842
BseCI ATCGAT 1 cut(s) 885
BseDI CCNNGG 3 cut(s) 14, 125, 707
BseGI GGATG 2 cut(s) 429, 754
BseLI CCNNNNNNNGG 9 cut(s) 20, 92, 95, 98, 126, 220, 275, 349, 439
BseMII CTCAG 2 cut(s) 273, 325
BseNI ACTGG 1 cut(s) 865
BseRI GAGGAG 5 cut(s) 31, 111, 114, 206, 764
BseSI GKGCMC 2 cut(s) 343, 504
BseXI GCAGC 3 cut(s) 36, 422, 563
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 3 cut(s) 164, 341, 840
BshVI ATCGAT 1 cut(s) 885
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 2 cut(s) 576, 725
BslI CCNNNNNNNGG 9 cut(s) 20, 92, 95, 98, 126, 220, 275, 349, 439
BsmAI GTCTC 3 cut(s) 239, 363, 783
BsmBI CGTCTC 2 cut(s) 363, 783
BsmFI GGGAC 2 cut(s) 576, 725
BsnI GGCC 3 cut(s) 164, 341, 840
Bso31I GGTCTC 1 cut(s) 239
BsoBI CYCGRG 1 cut(s) 213
Bsp120I GGGCCC 1 cut(s) 339
Bsp1286I GDGCHC 3 cut(s) 334, 343, 504
Bsp143I GATC 7 cut(s) 10, 73, 143, 202, 379, 589, 882
BspACI CCGC 5 cut(s) 433, 450, 504, 658, 799
BspANI GGCC 3 cut(s) 164, 341, 840
BspCNI CTCAG 2 cut(s) 274, 324
BspDI ATCGAT 1 cut(s) 885
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 3 cut(s) 340, 341, 839
BspMAI CTGCAG 1 cut(s) 519
BspMI ACCTGC 1 cut(s) 508
BspPI GGATC 4 cut(s) 5, 138, 374, 597
BspTNI GGTCTC 1 cut(s) 239
BsrI ACTGG 1 cut(s) 865
BssECI CCNNGG 3 cut(s) 14, 125, 707
BssMI GATC 7 cut(s) 10, 73, 143, 202, 379, 589, 882
BssNI GRCGYC 1 cut(s) 792
BssT1I CCWWGG 1 cut(s) 707
Bst2UI CCWGG 4 cut(s) 93, 126, 413, 842
Bst4CI ACNGT 2 cut(s) 696, 716
BstACI GRCGYC 1 cut(s) 792
BstAPI GCANNNNNTGC 1 cut(s) 435
BstC8I GCNNGC 5 cut(s) 247, 251, 504, 658, 662
BstDEI CTNAG 5 cut(s) 240, 282, 311, 325, 741
BstEII GGTNACC 2 cut(s) 353, 782
BstENI CCTNNNNNAGG 1 cut(s) 347
BstF5I GGATG 2 cut(s) 429, 754
BstKTI GATC 7 cut(s) 13, 76, 146, 205, 382, 592, 885
BstMAI GTCTC 3 cut(s) 239, 363, 783
BstMBI GATC 7 cut(s) 10, 73, 143, 202, 379, 589, 882
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 5 cut(s) 44, 161, 338, 435, 805
BstNI CCWGG 4 cut(s) 93, 126, 413, 842
BstNSI RCATGY 2 cut(s) 253, 512
BstPI GGTNACC 2 cut(s) 353, 782
BstSCI CCNGG 5 cut(s) 91, 124, 159, 411, 840
BstSFI CTRYAG 1 cut(s) 515
BstSLI GKGCMC 2 cut(s) 343, 504
BstV1I GCAGC 3 cut(s) 36, 422, 563
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
Bsu15I ATCGAT 1 cut(s) 885
BsuRI GGCC 3 cut(s) 164, 341, 840
BsuTUI ATCGAT 1 cut(s) 885
BtsCI GGATG 2 cut(s) 429, 754
BtsI GCAGTG 2 cut(s) 33, 424
BtsIMutI CAGTG 5 cut(s) 33, 279, 424, 721, 858
BveI ACCTGC 1 cut(s) 508
Cac8I GCNNGC 5 cut(s) 247, 251, 504, 658, 662
CciI TCATGA 1 cut(s) 301
Cfr13I GGNCC 4 cut(s) 339, 340, 704, 838
ClaI ATCGAT 1 cut(s) 885
CseI GACGC 1 cut(s) 800
Csp6I GTAC 2 cut(s) 210, 877
CviAII CATG 8 cut(s) 121, 250, 302, 439, 509, 611, 796, 848
CviQI GTAC 2 cut(s) 210, 877
DdeI CTNAG 5 cut(s) 240, 282, 311, 325, 741
DpnI GATC 7 cut(s) 12, 75, 145, 204, 381, 591, 884
DpnII GATC 7 cut(s) 10, 73, 143, 202, 379, 589, 882
EaeI YGGCCR 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 707
Eco24I GRGCYC 1 cut(s) 343
Eco31I GGTCTC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 704
Eco88I CYCGRG 1 cut(s) 213
Eco91I GGTNACC 2 cut(s) 353, 782
EcoNI CCTNNNNNAGG 1 cut(s) 347
EcoO109I RGGNCCY 2 cut(s) 339, 340
EcoO65I GGTNACC 2 cut(s) 353, 782
EcoRI GAATTC 1 cut(s) 543
EcoRII CCWGG 4 cut(s) 91, 124, 411, 840
EcoT14I CCWWGG 1 cut(s) 707
EcoT38I GRGCYC 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 707
Esp3I CGTCTC 2 cut(s) 363, 783
FaeI CATG 8 cut(s) 124, 253, 305, 442, 512, 614, 799, 851
FaqI GGGAC 2 cut(s) 576, 725
FatI CATG 8 cut(s) 120, 249, 301, 438, 508, 610, 795, 847
FauI CCCGC 3 cut(s) 511, 665, 792
Fnu4HI GCNGC 3 cut(s) 25, 436, 577
FokI GGATG 2 cut(s) 416, 741
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 3 cut(s) 25, 436, 577
FspBI CTAG 5 cut(s) 344, 404, 468, 869, 892
GluI GCNGC 3 cut(s) 25, 436, 577
HaeIII GGCC 3 cut(s) 164, 341, 840
HapII CCGG 1 cut(s) 161
HgaI GACGC 1 cut(s) 800
Hin1I GRCGYC 1 cut(s) 792
Hin1II CATG 8 cut(s) 124, 253, 305, 442, 512, 614, 799, 851
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 2 cut(s) 59, 564
HpaII CCGG 1 cut(s) 161
HphI GGTGA 4 cut(s) 75, 347, 794, 846
Hpy188I TCNGA 4 cut(s) 15, 133, 314, 549
Hpy188III TCNNGA 7 cut(s) 56, 302, 383, 462, 641, 699, 817
Hpy99I CGWCG 1 cut(s) 210
HpyAV CCTTC 5 cut(s) 62, 162, 343, 660, 713
HpyCH4III ACNGT 2 cut(s) 696, 716
HpyCH4V TGCA 5 cut(s) 429, 438, 517, 579, 808
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 161, 338, 435, 805
HpyF3I CTNAG 5 cut(s) 240, 282, 311, 325, 741
Hsp92I GRCGYC 1 cut(s) 792
Hsp92II CATG 8 cut(s) 124, 253, 305, 442, 512, 614, 799, 851
Kzo9I GATC 7 cut(s) 10, 73, 143, 202, 379, 589, 882
LmnI GCTCC 2 cut(s) 193, 865
Lsp1109I GCAGC 3 cut(s) 36, 422, 563
LweI GCATC 2 cut(s) 438, 719
MaeI CTAG 5 cut(s) 344, 404, 468, 869, 892
MaeIII GTNAC 3 cut(s) 353, 604, 782
MalI GATC 7 cut(s) 12, 75, 145, 204, 381, 591, 884
MboI GATC 7 cut(s) 10, 73, 143, 202, 379, 589, 882
MboII GAAGA 1 cut(s) 656
MfeI CAATTG 1 cut(s) 42
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 3 cut(s) 334, 343, 504
MluCI AATT 4 cut(s) 42, 387, 543, 580
MlyI GAGTC 1 cut(s) 558
MmeI TCCRAC 2 cut(s) 111, 140
MroXI GAANNNNTTC 1 cut(s) 543
MseI TTAA 5 cut(s) 198, 666, 725, 749, 768
MslI CAYNNNNRTG 1 cut(s) 759
MspA1I CMGCKG 1 cut(s) 435
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 5 cut(s) 93, 126, 161, 413, 842
MunI CAATTG 1 cut(s) 42
MvaI CCWGG 4 cut(s) 93, 126, 413, 842
MwoI GCNNNNNNNGC 5 cut(s) 44, 161, 338, 435, 805
NciI CCSGG 1 cut(s) 161
NdeII GATC 7 cut(s) 10, 73, 143, 202, 379, 589, 882
NlaIII CATG 8 cut(s) 124, 253, 305, 442, 512, 614, 799, 851
NlaIV GGNNCC 3 cut(s) 340, 341, 839
NmuCI GTSAC 2 cut(s) 353, 782
NspI RCATGY 2 cut(s) 253, 512
PaeI GCATGC 1 cut(s) 253
PagI TCATGA 1 cut(s) 301
PaqCI CACCTGC 1 cut(s) 508
PciI ACATGT 1 cut(s) 508
PcsI WCGNNNNNNNCGW 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 3 cut(s) 26, 437, 578
Ple19I CGATCG 1 cut(s) 205
PleI GAGTC 1 cut(s) 558
PpsI GAGTC 1 cut(s) 558
PscI ACATGT 1 cut(s) 508
Psp6I CCWGG 4 cut(s) 91, 124, 411, 840
PspEI GGTNACC 2 cut(s) 353, 782
PspGI CCWGG 4 cut(s) 91, 124, 411, 840
PspN4I GGNNCC 3 cut(s) 340, 341, 839
PspOMI GGGCCC 1 cut(s) 339
PspPI GGNCC 4 cut(s) 339, 340, 704, 838
PsrI GAACNNNNNNTAC 4 cut(s) 210, 242, 597, 629
PstI CTGCAG 1 cut(s) 519
PsuI RGATCY 1 cut(s) 10
PvuI CGATCG 1 cut(s) 205
RsaI GTAC 2 cut(s) 211, 878
RsaNI GTAC 2 cut(s) 210, 877
RseI CAYNNNNRTG 1 cut(s) 759
SaqAI TTAA 5 cut(s) 198, 666, 725, 749, 768
SatI GCNGC 3 cut(s) 25, 436, 577
Sau3AI GATC 7 cut(s) 10, 73, 143, 202, 379, 589, 882
Sau96I GGNCC 4 cut(s) 339, 340, 704, 838
SchI GAGTC 1 cut(s) 558
ScrFI CCNGG 5 cut(s) 93, 126, 161, 413, 842
SduI GDGCHC 3 cut(s) 334, 343, 504
SfaNI GCATC 2 cut(s) 438, 719
SfcI CTRYAG 1 cut(s) 515
SinI GGWCC 1 cut(s) 704
SmiMI CAYNNNNRTG 1 cut(s) 759
SphI GCATGC 1 cut(s) 253
Sse9I AATT 4 cut(s) 42, 387, 543, 580
SsiI CCGC 5 cut(s) 433, 450, 504, 658, 799
SspI AATATT 1 cut(s) 481
SspMI CTAG 5 cut(s) 344, 404, 468, 869, 892
StyD4I CCNGG 5 cut(s) 91, 124, 159, 411, 840
StyI CCWWGG 1 cut(s) 707
TaaI ACNGT 2 cut(s) 696, 716
TaqI TCGA 2 cut(s) 698, 885
TaqII GACCGA 1 cut(s) 801
TasI AATT 4 cut(s) 42, 387, 543, 580
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 5 cut(s) 198, 666, 725, 749, 768
Tru9I TTAA 5 cut(s) 198, 666, 725, 749, 768
TscAI CASTG 5 cut(s) 40, 286, 431, 721, 865
TseFI GTSAC 2 cut(s) 353, 782
TseI GCWGC 3 cut(s) 24, 435, 576
Tsp45I GTSAC 2 cut(s) 353, 782
TspDTI ATGAA 3 cut(s) 262, 318, 836
TspRI CASTG 5 cut(s) 40, 286, 431, 721, 865
VpaK11BI GGWCC 1 cut(s) 704
XagI CCTNNNNNAGG 1 cut(s) 347
XapI RAATTY 1 cut(s) 543
XceI RCATGY 2 cut(s) 253, 512
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 5 cut(s) 344, 404, 468, 869, 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.