Rh2AG537100

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0013853
Physical Location & Seq
Reverse (-)
76488189 .. 76490894
2706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG537100.1

Sequence Viewer

Length: 1056 bp
ATGGAGAGAGATCCGAGGAGAGGCAGCAATATCACTGCCTCAATTGCTAACCTTCCAGAATCATTGTTGGGCGATCAACCATCACCACCACCAGGAGGAGGAGGCAGGGCGTTTCCAACCATGCCTGGGTCGGAGTTTGCCCGATCCATTTACGCCGACCCGGCCAGAAGGGAGGTAGAGCAGTTGATTGAGGAGCTTAACGATCGTCGTACCCGAGAACAGGCTCTACAAGGTTTTAGAGTCTCAGTTTTGATGCTGAAGGAGGTTCCTGACGTGGCTCTATTACTGTGGCATACCAGTGGTCTCATGTTTATGCTCCTAAGGGAAATAACTGGTGTATACCACCTGATGTCAACCCCAAATCTTACTCAGGAAGTATCAAACCGAGTTTGCAATACCATAACTCTGTTTCAGTGTATAGCTTCTCATCTAGAGACAAGAAAGCCATTTATCAGAGCTAGCATGCCATTGTATCTCTACCCTTTCATTGGCACTGAGAACAAGGACAAGCCCCATGAATATCTCAGACTATCCAGCTTAGGTGCTCTTGGGGCCCTAGTGAAGGGTCACCCACCAAATAGAGACGAAGTTGATCCAGAAATTATACACTTCCTCCTAGAAAGCCAGGTATTTTGCCACTGCATCCGCTGCATGGAAGTTGGCGGTGTATTGTCAAGAACTGTGGCTACATTTATAGTTGAAAGAATTCTGACAACTGATGAGGGACTCAACTACTGCTGCAATTTCGGGGATCGGTTTTATGTAGTAACTCATGTTCTTGGAAAGATGACTGATAAGCTTCTTGAAGAACCTTCAGCCCGCCTGCTTAAACTTATCATAAAGTGCTTTCTTATACTGTCGAAAGGTCCAAGGGACAGTGAAGGTTTAAGATGCTGTATTCCAAAGAGCTTAACACATCCCAATGTTATTAACCTCCTCTCTGGTGACCGAGACGCCATGCGGGGTCTGCAACAGCTCTTGAAAAATGTTTCAAATGGGCACCAGGTTCATGTATCACCCACTGGGGAGCTAGTTGGGTACTTGATCGATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

351

Amino Acids

39.2

Weight (kDa)

6.83

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rcd1 PF04078 62 - 330 3.1e-83 Cell differentiation family, Rcd1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013853)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12980
fragaria_vesca FvH4_6g42770 FvH4_6g42770
malus_domestica MD09G1071800.v1.1
prunus_persica Prupe.3G214100_v2.0.a1 Prupe.3G214100_v2.0.a1
pyrus_communis pycom09g03440
rosa_chinensis RchiOBHm_Chr2g0158671
rosa_laevigata RLG00000021105
rosa_multiflora Rmu_sc0004188.1_g000011
rosa_roxburghii Rroxscaffold_2G00091120
rosa_rugosa Rorug02G0471300
rosa_samantha Rh2AG537100 Rh2BG550300 Rh2CG520800 Rh2DG559900
rosa_wichuraiana Rw2G044470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 999
AccI GTMKAC 1 cut(s) 339
AciI CCGC 4 cut(s) 646, 663, 820, 961
AclWI GGATC 4 cut(s) 5, 138, 587, 759
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 1 cut(s) 705
AcuI CTGAAG 2 cut(s) 278, 798
AcyI GRCGYC 1 cut(s) 954
AfaI GTAC 2 cut(s) 211, 1040
AfiI CCNNNNNNNGG 9 cut(s) 20, 92, 95, 98, 126, 220, 488, 562, 652
AgsI TTSAA 4 cut(s) 701, 806, 982, 993
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 4 cut(s) 91, 124, 624, 1002
AluBI AGCT 8 cut(s) 196, 422, 458, 537, 799, 909, 976, 1030
AluI AGCT 8 cut(s) 196, 422, 458, 537, 799, 909, 976, 1030
Alw21I GWGCWC 1 cut(s) 547
Alw26I GTCTC 5 cut(s) 247, 308, 428, 576, 945
AlwI GGATC 4 cut(s) 5, 138, 587, 759
Ama87I CYCGRG 1 cut(s) 213
AoxI GGCC 2 cut(s) 162, 552
ApaI GGGCCC 1 cut(s) 556
ApeKI GCWGC 3 cut(s) 24, 648, 738
ApoI RAATTY 1 cut(s) 705
Asp700I GAANNNNTTC 1 cut(s) 705
AspS9I GGNCC 3 cut(s) 552, 553, 866
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 4 cut(s) 75, 560, 956, 1008
AsuNHI GCTAGC 1 cut(s) 458
AvaI CYCGRG 1 cut(s) 213
AvaII GGWCC 1 cut(s) 866
AxyI CCTNAGG 1 cut(s) 320
BaeGI GKGCMC 2 cut(s) 556, 1002
BanI GGYRCC 1 cut(s) 999
BanII GRGCYC 1 cut(s) 556
Bbv12I GWGCWC 1 cut(s) 547
BbvI GCAGC 3 cut(s) 36, 635, 725
BccI CCATC 2 cut(s) 88, 1043
BciT130I CCWGG 4 cut(s) 93, 126, 626, 1004
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 5 cut(s) 247, 308, 428, 576, 945
BfaI CTAG 6 cut(s) 431, 459, 557, 617, 1031, 1054
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 3 cut(s) 25, 649, 739
BlsI GCNGC 3 cut(s) 26, 650, 740
Bme1390I CCNGG 5 cut(s) 93, 126, 161, 626, 1004
Bme18I GGWCC 1 cut(s) 866
BmeT110I CYCGRG 1 cut(s) 213
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 3 cut(s) 552, 553, 866
BmiI GGNNCC 4 cut(s) 267, 553, 554, 1001
BmrFI CCNGG 5 cut(s) 93, 126, 161, 626, 1004
BmrI ACTGGG 1 cut(s) 1032
BmsI GCATC 3 cut(s) 243, 651, 881
BmtI GCTAGC 1 cut(s) 462
BmuI ACTGGG 1 cut(s) 1032
Bpu10I CCTNAGC 1 cut(s) 538
BpuMI CCSGG 1 cut(s) 161
Bsa29I ATCGAT 1 cut(s) 1047
BsaHI GRCGYC 1 cut(s) 954
BsaI GGTCTC 1 cut(s) 308
BsaJI CCNNGG 3 cut(s) 14, 125, 869
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 9 cut(s) 20, 92, 95, 98, 126, 220, 488, 562, 652
Bse1I ACTGG 3 cut(s) 297, 337, 1027
Bse21I CCTNAGG 1 cut(s) 320
BseBI CCWGG 4 cut(s) 93, 126, 626, 1004
BseCI ATCGAT 1 cut(s) 1047
BseDI CCNNGG 3 cut(s) 14, 125, 869
BseGI GGATG 2 cut(s) 642, 916
BseLI CCNNNNNNNGG 9 cut(s) 20, 92, 95, 98, 126, 220, 488, 562, 652
BseMII CTCAG 4 cut(s) 258, 383, 486, 538
BseNI ACTGG 3 cut(s) 297, 337, 1027
BseRI GAGGAG 5 cut(s) 31, 111, 114, 206, 926
BseSI GKGCMC 2 cut(s) 556, 1002
BseXI GCAGC 3 cut(s) 36, 635, 725
Bsh1285I CGRYCG 1 cut(s) 205
BshFI GGCC 2 cut(s) 164, 554
BshNI GGYRCC 1 cut(s) 999
BshVI ATCGAT 1 cut(s) 1047
BsiEI CGRYCG 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 547
BsiHKCI CYCGRG 1 cut(s) 213
BsiSI CCGG 1 cut(s) 161
BslFI GGGAC 2 cut(s) 738, 887
BslI CCNNNNNNNGG 9 cut(s) 20, 92, 95, 98, 126, 220, 488, 562, 652
BsmAI GTCTC 5 cut(s) 247, 308, 428, 576, 945
BsmBI CGTCTC 2 cut(s) 576, 945
BsmFI GGGAC 2 cut(s) 738, 887
BsnI GGCC 2 cut(s) 164, 554
Bso31I GGTCTC 1 cut(s) 308
BsoBI CYCGRG 1 cut(s) 213
Bsp120I GGGCCC 1 cut(s) 552
Bsp1286I GDGCHC 3 cut(s) 547, 556, 1002
Bsp143I GATC 7 cut(s) 10, 73, 143, 202, 592, 751, 1044
BspACI CCGC 4 cut(s) 646, 663, 820, 961
BspANI GGCC 2 cut(s) 164, 554
BspCNI CTCAG 4 cut(s) 257, 382, 487, 537
BspDI ATCGAT 1 cut(s) 1047
BspLI GGNNCC 4 cut(s) 267, 553, 554, 1001
BspOI GCTAGC 1 cut(s) 462
BspPI GGATC 4 cut(s) 5, 138, 587, 759
BspT107I GGYRCC 1 cut(s) 999
BspTNI GGTCTC 1 cut(s) 308
BsrI ACTGG 3 cut(s) 297, 337, 1027
BssECI CCNNGG 3 cut(s) 14, 125, 869
BssMI GATC 7 cut(s) 10, 73, 143, 202, 592, 751, 1044
BssNAI GTATAC 1 cut(s) 340
BssNI GRCGYC 1 cut(s) 954
BssT1I CCWWGG 1 cut(s) 869
Bst1107I GTATAC 1 cut(s) 340
Bst2UI CCWGG 4 cut(s) 93, 126, 626, 1004
Bst4CI ACNGT 4 cut(s) 288, 682, 858, 878
BstACI GRCGYC 1 cut(s) 954
BstAPI GCANNNNNTGC 1 cut(s) 648
BstC8I GCNNGC 4 cut(s) 460, 464, 820, 824
BstDEI CTNAG 6 cut(s) 244, 320, 369, 495, 524, 538
BstEII GGTNACC 2 cut(s) 566, 944
BstENI CCTNNNNNAGG 1 cut(s) 560
BstF5I GGATG 2 cut(s) 642, 916
BstKTI GATC 7 cut(s) 13, 76, 146, 205, 595, 754, 1047
BstMAI GTCTC 5 cut(s) 247, 308, 428, 576, 945
BstMBI GATC 7 cut(s) 10, 73, 143, 202, 592, 751, 1044
BstMCI CGRYCG 1 cut(s) 205
BstMWI GCNNNNNNNGC 5 cut(s) 44, 161, 551, 648, 967
BstNI CCWGG 4 cut(s) 93, 126, 626, 1004
BstNSI RCATGY 1 cut(s) 466
BstPI GGTNACC 2 cut(s) 566, 944
BstSCI CCNGG 5 cut(s) 91, 124, 159, 624, 1002
BstSLI GKGCMC 2 cut(s) 556, 1002
BstV1I GCAGC 3 cut(s) 36, 635, 725
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BstZ17I GTATAC 1 cut(s) 340
Bsu15I ATCGAT 1 cut(s) 1047
Bsu36I CCTNAGG 1 cut(s) 320
BsuRI GGCC 2 cut(s) 164, 554
BsuTUI ATCGAT 1 cut(s) 1047
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 2 cut(s) 642, 916
BtsI GCAGTG 2 cut(s) 33, 637
BtsIMutI CAGTG 7 cut(s) 33, 304, 419, 492, 637, 883, 1020
Cac8I GCNNGC 4 cut(s) 460, 464, 820, 824
Cfr13I GGNCC 3 cut(s) 552, 553, 866
ClaI ATCGAT 1 cut(s) 1047
CseI GACGC 1 cut(s) 962
CsiI ACCWGGT 1 cut(s) 1002
Csp6I GTAC 2 cut(s) 210, 1039
CspCI CAANNNNNGTGG 2 cut(s) 663, 698
CviAII CATG 8 cut(s) 121, 307, 463, 515, 652, 773, 958, 1010
CviQI GTAC 2 cut(s) 210, 1039
DdeI CTNAG 6 cut(s) 244, 320, 369, 495, 524, 538
DpnI GATC 7 cut(s) 12, 75, 145, 204, 594, 753, 1046
DpnII GATC 7 cut(s) 10, 73, 143, 202, 592, 751, 1044
EaeI YGGCCR 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 869
Eco24I GRGCYC 1 cut(s) 556
Eco31I GGTCTC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 866
Eco57I CTGAAG 2 cut(s) 278, 798
Eco81I CCTNAGG 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 213
Eco91I GGTNACC 2 cut(s) 566, 944
EcoNI CCTNNNNNAGG 1 cut(s) 560
EcoO109I RGGNCCY 2 cut(s) 552, 553
EcoO65I GGTNACC 2 cut(s) 566, 944
EcoRI GAATTC 1 cut(s) 705
EcoRII CCWGG 4 cut(s) 91, 124, 624, 1002
EcoT14I CCWWGG 1 cut(s) 869
EcoT38I GRGCYC 1 cut(s) 556
ErhI CCWWGG 1 cut(s) 869
Esp3I CGTCTC 2 cut(s) 576, 945
FaeI CATG 8 cut(s) 124, 310, 466, 518, 655, 776, 961, 1013
FaqI GGGAC 2 cut(s) 738, 887
FatI CATG 8 cut(s) 120, 306, 462, 514, 651, 772, 957, 1009
FauI CCCGC 2 cut(s) 827, 954
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 3 cut(s) 25, 649, 739
FokI GGATG 2 cut(s) 629, 903
FriOI GRGCYC 1 cut(s) 556
Fsp4HI GCNGC 3 cut(s) 25, 649, 739
FspBI CTAG 6 cut(s) 431, 459, 557, 617, 1031, 1054
GluI GCNGC 3 cut(s) 25, 649, 739
HaeIII GGCC 2 cut(s) 164, 554
HapII CCGG 1 cut(s) 161
HgaI GACGC 1 cut(s) 962
Hin1I GRCGYC 1 cut(s) 954
Hin1II CATG 8 cut(s) 124, 310, 466, 518, 655, 776, 961, 1013
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HindIII AAGCTT 1 cut(s) 797
HinfI GANTC 3 cut(s) 59, 240, 726
HpaII CCGG 1 cut(s) 161
HphI GGTGA 4 cut(s) 75, 560, 956, 1008
Hpy166II GTNNAC 2 cut(s) 340, 354
Hpy188I TCNGA 5 cut(s) 15, 133, 455, 527, 711
Hpy188III TCNNGA 8 cut(s) 56, 269, 371, 431, 596, 675, 803, 979
Hpy8I GTNNAC 2 cut(s) 340, 354
Hpy99I CGWCG 1 cut(s) 210
HpyAV CCTTC 6 cut(s) 62, 162, 253, 556, 822, 875
HpyCH4III ACNGT 4 cut(s) 288, 682, 858, 878
HpyCH4IV ACGT 1 cut(s) 273
HpyCH4V TGCA 5 cut(s) 393, 642, 651, 741, 970
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 161, 551, 648, 967
HpyF3I CTNAG 6 cut(s) 244, 320, 369, 495, 524, 538
HpySE526I ACGT 1 cut(s) 273
Hsp92I GRCGYC 1 cut(s) 954
Hsp92II CATG 8 cut(s) 124, 310, 466, 518, 655, 776, 961, 1013
Kzo9I GATC 7 cut(s) 10, 73, 143, 202, 592, 751, 1044
LmnI GCTCC 3 cut(s) 193, 321, 1027
Lsp1109I GCAGC 3 cut(s) 36, 635, 725
LweI GCATC 3 cut(s) 243, 651, 881
MabI ACCWGGT 1 cut(s) 1002
MaeI CTAG 6 cut(s) 431, 459, 557, 617, 1031, 1054
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 3 cut(s) 566, 766, 944
MalI GATC 7 cut(s) 12, 75, 145, 204, 594, 753, 1046
MboI GATC 7 cut(s) 10, 73, 143, 202, 592, 751, 1044
MboII GAAGA 1 cut(s) 818
MfeI CAATTG 1 cut(s) 42
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 3 cut(s) 547, 556, 1002
MluCI AATT 4 cut(s) 42, 600, 705, 742
MlyI GAGTC 2 cut(s) 249, 720
MmeI TCCRAC 2 cut(s) 111, 140
MroXI GAANNNNTTC 1 cut(s) 705
MseI TTAA 5 cut(s) 198, 828, 887, 911, 930
MslI CAYNNNNRTG 3 cut(s) 297, 311, 921
MspA1I CMGCKG 1 cut(s) 648
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 5 cut(s) 93, 126, 161, 626, 1004
MunI CAATTG 1 cut(s) 42
MvaI CCWGG 4 cut(s) 93, 126, 626, 1004
MwoI GCNNNNNNNGC 5 cut(s) 44, 161, 551, 648, 967
NciI CCSGG 1 cut(s) 161
NdeII GATC 7 cut(s) 10, 73, 143, 202, 592, 751, 1044
NheI GCTAGC 1 cut(s) 458
NlaIII CATG 8 cut(s) 124, 310, 466, 518, 655, 776, 961, 1013
NlaIV GGNNCC 4 cut(s) 267, 553, 554, 1001
NmuCI GTSAC 2 cut(s) 566, 944
NspI RCATGY 1 cut(s) 466
PaeI GCATGC 1 cut(s) 466
PcsI WCGNNNNNNNCGW 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 705
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 3 cut(s) 26, 650, 740
Ple19I CGATCG 1 cut(s) 205
PleI GAGTC 2 cut(s) 248, 720
PpsI GAGTC 2 cut(s) 248, 720
Psp6I CCWGG 4 cut(s) 91, 124, 624, 1002
PspEI GGTNACC 2 cut(s) 566, 944
PspGI CCWGG 4 cut(s) 91, 124, 624, 1002
PspN4I GGNNCC 4 cut(s) 267, 553, 554, 1001
PspOMI GGGCCC 1 cut(s) 552
PspPI GGNCC 3 cut(s) 552, 553, 866
PsrI GAACNNNNNNTAC 6 cut(s) 210, 242, 670, 702, 759, 791
PsuI RGATCY 1 cut(s) 10
PvuI CGATCG 1 cut(s) 205
RsaI GTAC 2 cut(s) 211, 1040
RsaNI GTAC 2 cut(s) 210, 1039
RseI CAYNNNNRTG 3 cut(s) 297, 311, 921
SaqAI TTAA 5 cut(s) 198, 828, 887, 911, 930
SatI GCNGC 3 cut(s) 25, 649, 739
Sau3AI GATC 7 cut(s) 10, 73, 143, 202, 592, 751, 1044
Sau96I GGNCC 3 cut(s) 552, 553, 866
SchI GAGTC 2 cut(s) 249, 720
ScrFI CCNGG 5 cut(s) 93, 126, 161, 626, 1004
SduI GDGCHC 3 cut(s) 547, 556, 1002
SexAI ACCWGGT 1 cut(s) 1002
SfaNI GCATC 3 cut(s) 243, 651, 881
SinI GGWCC 1 cut(s) 866
SmiMI CAYNNNNRTG 3 cut(s) 297, 311, 921
SphI GCATGC 1 cut(s) 466
Sse9I AATT 4 cut(s) 42, 600, 705, 742
SsiI CCGC 4 cut(s) 646, 663, 820, 961
SspMI CTAG 6 cut(s) 431, 459, 557, 617, 1031, 1054
StyD4I CCNGG 5 cut(s) 91, 124, 159, 624, 1002
StyI CCWWGG 1 cut(s) 869
TaaI ACNGT 4 cut(s) 288, 682, 858, 878
TaiI ACGT 1 cut(s) 276
TaqI TCGA 2 cut(s) 860, 1047
TaqII GACCGA 1 cut(s) 963
TasI AATT 4 cut(s) 42, 600, 705, 742
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 5 cut(s) 198, 828, 887, 911, 930
Tru9I TTAA 5 cut(s) 198, 828, 887, 911, 930
TscAI CASTG 7 cut(s) 40, 304, 419, 499, 644, 883, 1027
TseFI GTSAC 2 cut(s) 566, 944
TseI GCWGC 3 cut(s) 24, 648, 738
Tsp45I GTSAC 2 cut(s) 566, 944
TspDTI ATGAA 3 cut(s) 475, 531, 998
TspRI CASTG 7 cut(s) 40, 304, 419, 499, 644, 883, 1027
VpaK11BI GGWCC 1 cut(s) 866
XagI CCTNNNNNAGG 1 cut(s) 560
XapI RAATTY 1 cut(s) 705
XbaI TCTAGA 1 cut(s) 430
XceI RCATGY 1 cut(s) 466
XmiI GTMKAC 1 cut(s) 339
XmnI GAANNNNTTC 1 cut(s) 705
XspI CTAG 6 cut(s) 431, 459, 557, 617, 1031, 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.