MD09G1071800.v1.1

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0013853
Physical Location & Seq
Reverse (-)
4945640 .. 4949496
3857 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1071800.v1.1.491

Sequence Viewer

Length: 984 bp
ATGGCTACTCTTCCAGAGTCTTTGTTGGCCGATCAATCGTCATTACCGGGAAACCAAGCGGGTCAACCTGCGTCCCGGCCACCCCAACCCGGTGACGGCGACCAGTCCAGAAGGGTTCCTGTGGAGCAGTTGATTCTAGAGCTTAACGATGATCGTACCCGAGAAAATGCCCTACAACGCCTCTCTAAGATTAGGGAAATTCGTGAAGACTTGGCTCCATTACTGTGGCACTCATTTGGTACTACATTTACGCTGTTGAAGGAAATAATTGCAGTGTACCGCTTACTTTCAACCCCAAATCTTACTCAGGAATCATCAAATCGGGCATGCAATACTCTCTCTCTATTTCAGTGCATAGCTGCTCATCCTGAGACAAGAGAGCCATTCCTCCGGGCTATTGTGCCGTTCTATATTTACCCTTTCCTCAACACGACCGAAAAGGACAAGCCTCATGAATACTTAAGGCTGTCGAGCTTAGGCGTTATTGGTGCCCTTGACAATGATGAAGAGACTGTTCTTTTCCTTCTTCAAACTCAAATATTCTACCATTGCATGCGCTGCATTGAAGTTGGCACTGGACTGTCAAAAACTGTGGCCACATTCATAATGGAGAGGATTCTGATGAGTCCTGAGGGACAGAAGTACTGCTGCGCTTTCCATGATCGTTTTTTCGTAGTCACTCAAGCTCTTACCAAGATGCTCGACAGGATTACTACAGAAGAGCCTTCCCTCCGGCTGCTTAAACTCATCGTTCGTTGCTGTATGAGGCTCGCAGAAGGCCAAAAGGACGCCGACTACAGAAATTTGTGTCTTCCTAAGAGCTTGAAGGATCCTAAAGTCATTAACCTCATCGCTGACGACCCAACATCCATGGCATGTATGAGACGACTTGTTCAGTGTCTTACAACTACGAGAAGGGCTCCTCCGACAGACGCAGGCGCGGAGGTCGAAAACGGGCACCCGGTGAAGACTGAACAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

328

Amino Acids

36.97

Weight (kDa)

6.13

Isoelectric Point (pI)

56.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rcd1 PF04078 44 - 299 3.5e-86 Cell differentiation family, Rcd1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013853)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12980
fragaria_vesca FvH4_6g42770 FvH4_6g42770
malus_domestica MD09G1071800.v1.1
prunus_persica Prupe.3G214100_v2.0.a1 Prupe.3G214100_v2.0.a1
pyrus_communis pycom09g03440
rosa_chinensis RchiOBHm_Chr2g0158671
rosa_laevigata RLG00000021105
rosa_multiflora Rmu_sc0004188.1_g000011
rosa_roxburghii Rroxscaffold_2G00091120
rosa_rugosa Rorug02G0471300
rosa_samantha Rh2AG537100 Rh2BG550300 Rh2CG520800 Rh2DG559900
rosa_wichuraiana Rw2G044470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 76
AccB1I GGYRCC 2 cut(s) 488, 957
AccII CGCG 1 cut(s) 941
AciI CCGC 3 cut(s) 59, 280, 941
AclWI GGATC 2 cut(s) 824, 837
AcoI YGGCCR 3 cut(s) 27, 77, 594
AcsI RAATTY 2 cut(s) 198, 802
AcyI GRCGYC 1 cut(s) 789
AdeI CACNNNGTG 1 cut(s) 964
AfaI GTAC 4 cut(s) 157, 241, 278, 644
AfiI CCNNNNNNNGG 2 cut(s) 89, 95
AflII CTTAAG 1 cut(s) 460
AgsI TTSAA 5 cut(s) 259, 291, 530, 566, 826
AluBI AGCT 5 cut(s) 142, 359, 474, 686, 822
AluI AGCT 5 cut(s) 142, 359, 474, 686, 822
Alw26I GTCTC 3 cut(s) 365, 503, 877
AlwI GGATC 2 cut(s) 824, 837
Ama87I CYCGRG 1 cut(s) 159
AoxI GGCC 4 cut(s) 27, 77, 594, 778
ApeKI GCWGC 4 cut(s) 359, 558, 648, 736
ApoI RAATTY 2 cut(s) 198, 802
AspLEI GCGC 3 cut(s) 558, 653, 941
AsuC2I CCSGG 5 cut(s) 48, 76, 90, 392, 962
AsuHPI GGTGA 2 cut(s) 104, 976
AvaI CYCGRG 1 cut(s) 159
AxyI CCTNAGG 1 cut(s) 630
BaeGI GKGCMC 2 cut(s) 493, 960
BalI TGGCCA 1 cut(s) 596
BamHI GGATCC 1 cut(s) 829
BanI GGYRCC 2 cut(s) 488, 957
BanII GRGCYC 1 cut(s) 922
BbsI GAAGAC 3 cut(s) 213, 803, 974
BbvI GCAGC 4 cut(s) 346, 545, 635, 723
BceAI ACGGC 2 cut(s) 112, 388
BcnI CCSGG 5 cut(s) 48, 76, 90, 392, 962
BcoDI GTCTC 3 cut(s) 365, 503, 877
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 2 cut(s) 714, 796
BfrI CTTAAG 1 cut(s) 460
BfuAI ACCTGC 1 cut(s) 76
BisI GCNGC 4 cut(s) 360, 559, 649, 737
BlsI GCNGC 4 cut(s) 361, 560, 650, 738
BmcAI AGTACT 1 cut(s) 644
Bme1390I CCNGG 5 cut(s) 48, 76, 90, 392, 962
BmeT110I CYCGRG 1 cut(s) 159
BmiI GGNNCC 6 cut(s) 117, 216, 490, 831, 921, 959
BmrFI CCNGG 5 cut(s) 48, 76, 90, 392, 962
BmsI GCATC 1 cut(s) 687
BpiI GAAGAC 3 cut(s) 213, 803, 974
BplI GAGNNNNNCTC 2 cut(s) 904, 936
Bpu10I CCTNAGC 1 cut(s) 475
BpuEI CTTGAG 1 cut(s) 666
BpuMI CCSGG 5 cut(s) 48, 76, 90, 392, 962
BsaHI GRCGYC 1 cut(s) 789
BsaJI CCNNGG 1 cut(s) 870
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 95
Bse1I ACTGG 2 cut(s) 103, 580
Bse21I CCTNAGG 1 cut(s) 630
Bse3DI GCAATG 1 cut(s) 547
BseDI CCNNGG 1 cut(s) 870
BseGI GGATG 2 cut(s) 364, 866
BseLI CCNNNNNNNGG 2 cut(s) 89, 95
BseMI GCAATG 1 cut(s) 547
BseMII CTCAG 3 cut(s) 320, 360, 621
BseNI ACTGG 2 cut(s) 103, 580
BseRI GAGGAG 1 cut(s) 912
BseSI GKGCMC 2 cut(s) 493, 960
BseXI GCAGC 4 cut(s) 346, 545, 635, 723
Bsh1236I CGCG 1 cut(s) 941
Bsh1285I CGRYCG 1 cut(s) 435
BshFI GGCC 4 cut(s) 29, 79, 596, 780
BshNI GGYRCC 2 cut(s) 488, 957
BsiEI CGRYCG 1 cut(s) 435
BsiHKCI CYCGRG 1 cut(s) 159
BsiSI CCGG 6 cut(s) 47, 76, 90, 391, 733, 962
BslFI GGGAC 2 cut(s) 58, 648
BslI CCNNNNNNNGG 2 cut(s) 89, 95
BsmAI GTCTC 3 cut(s) 365, 503, 877
BsmBI CGTCTC 1 cut(s) 877
BsmFI GGGAC 2 cut(s) 58, 648
BsnI GGCC 4 cut(s) 29, 79, 596, 780
BsoBI CYCGRG 1 cut(s) 159
Bsp1286I GDGCHC 3 cut(s) 493, 922, 960
Bsp143I GATC 4 cut(s) 31, 151, 661, 829
Bsp19I CCATGG 1 cut(s) 870
BspACI CCGC 3 cut(s) 59, 280, 941
BspANI GGCC 4 cut(s) 29, 79, 596, 780
BspCNI CTCAG 3 cut(s) 319, 361, 622
BspFNI CGCG 1 cut(s) 941
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 6 cut(s) 117, 216, 490, 831, 921, 959
BspMI ACCTGC 1 cut(s) 76
BspPI GGATC 2 cut(s) 824, 837
BspQI GCTCTTC 1 cut(s) 714
BspT107I GGYRCC 2 cut(s) 488, 957
BspTI CTTAAG 1 cut(s) 460
BsrDI GCAATG 1 cut(s) 547
BsrI ACTGG 2 cut(s) 103, 580
BssECI CCNNGG 1 cut(s) 870
BssMI GATC 4 cut(s) 31, 151, 661, 829
BssNI GRCGYC 1 cut(s) 789
BssT1I CCWWGG 1 cut(s) 870
Bst4CI ACNGT 4 cut(s) 225, 514, 582, 592
Bst6I CTCTTC 3 cut(s) 15, 501, 714
BstACI GRCGYC 1 cut(s) 789
BstAFI CTTAAG 1 cut(s) 460
BstAPI GCANNNNNTGC 1 cut(s) 558
BstC8I GCNNGC 4 cut(s) 328, 554, 771, 937
BstDEI CTNAG 6 cut(s) 186, 306, 369, 475, 630, 816
BstDSI CCRYGG 1 cut(s) 870
BstF5I GGATG 2 cut(s) 364, 866
BstFNI CGCG 1 cut(s) 941
BstHHI GCGC 3 cut(s) 558, 653, 941
BstKTI GATC 4 cut(s) 34, 154, 664, 832
BstMAI GTCTC 3 cut(s) 365, 503, 877
BstMBI GATC 4 cut(s) 31, 151, 661, 829
BstMCI CGRYCG 1 cut(s) 435
BstMWI GCNNNNNNNGC 1 cut(s) 558
BstNSI RCATGY 3 cut(s) 330, 556, 879
BstSCI CCNGG 5 cut(s) 46, 74, 88, 390, 960
BstSFI CTRYAG 2 cut(s) 714, 796
BstSLI GKGCMC 2 cut(s) 493, 960
BstUI CGCG 1 cut(s) 941
BstV1I GCAGC 4 cut(s) 346, 545, 635, 723
BstV2I GAAGAC 3 cut(s) 213, 803, 974
BstX2I RGATCY 1 cut(s) 829
BstXI CCANNNNNNTGG 1 cut(s) 225
BstYI RGATCY 1 cut(s) 829
Bsu36I CCTNAGG 1 cut(s) 630
BsuRI GGCC 4 cut(s) 29, 79, 596, 780
BtgI CCRYGG 1 cut(s) 870
BtgZI GCGATG 1 cut(s) 835
BtsCI GGATG 2 cut(s) 364, 866
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 4 cut(s) 279, 356, 573, 902
BveI ACCTGC 1 cut(s) 76
Cac8I GCNNGC 4 cut(s) 328, 554, 771, 937
CciI TCATGA 1 cut(s) 451
CfoI GCGC 3 cut(s) 558, 653, 941
CseI GACGC 3 cut(s) 60, 797, 941
Csp6I GTAC 4 cut(s) 156, 240, 277, 643
CspCI CAANNNNNGTGG 2 cut(s) 573, 608
CviAII CATG 6 cut(s) 327, 452, 553, 659, 871, 876
CviQI GTAC 4 cut(s) 156, 240, 277, 643
DdeI CTNAG 6 cut(s) 186, 306, 369, 475, 630, 816
DpnI GATC 4 cut(s) 33, 153, 663, 831
DpnII GATC 4 cut(s) 31, 151, 661, 829
DraIII CACNNNGTG 1 cut(s) 964
EaeI YGGCCR 3 cut(s) 27, 77, 594
Eam1104I CTCTTC 3 cut(s) 15, 501, 714
EarI CTCTTC 3 cut(s) 15, 501, 714
Eco130I CCWWGG 1 cut(s) 870
Eco24I GRGCYC 1 cut(s) 922
Eco81I CCTNAGG 1 cut(s) 630
Eco88I CYCGRG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 870
EcoT38I GRGCYC 1 cut(s) 922
ErhI CCWWGG 1 cut(s) 870
Esp3I CGTCTC 1 cut(s) 877
FaeI CATG 6 cut(s) 330, 455, 556, 662, 874, 879
FaqI GGGAC 2 cut(s) 58, 648
FatI CATG 6 cut(s) 326, 451, 552, 658, 870, 875
FauI CCCGC 1 cut(s) 52
Fnu4HI GCNGC 4 cut(s) 360, 559, 649, 737
FokI GGATG 2 cut(s) 351, 853
FriOI GRGCYC 1 cut(s) 922
Fsp4HI GCNGC 4 cut(s) 360, 559, 649, 737
FspBI CTAG 1 cut(s) 137
GlaI GCGC 3 cut(s) 557, 652, 940
GluI GCNGC 4 cut(s) 360, 559, 649, 737
HaeIII GGCC 4 cut(s) 29, 79, 596, 780
HapII CCGG 6 cut(s) 47, 76, 90, 391, 733, 962
HgaI GACGC 3 cut(s) 60, 797, 941
HhaI GCGC 3 cut(s) 558, 653, 941
Hin1I GRCGYC 1 cut(s) 789
Hin1II CATG 6 cut(s) 330, 455, 556, 662, 874, 879
Hin6I GCGC 3 cut(s) 556, 651, 939
HinP1I GCGC 3 cut(s) 556, 651, 939
HincII GTYRAC 1 cut(s) 65
HindII GTYRAC 1 cut(s) 65
HinfI GANTC 5 cut(s) 17, 133, 311, 616, 625
HpaII CCGG 6 cut(s) 47, 76, 90, 391, 733, 962
HphI GGTGA 2 cut(s) 104, 976
Hpy166II GTNNAC 2 cut(s) 65, 277
Hpy188I TCNGA 2 cut(s) 621, 927
Hpy188III TCNNGA 8 cut(s) 14, 108, 137, 203, 308, 368, 452, 629
Hpy8I GTNNAC 2 cut(s) 65, 277
HpyAV CCTTC 7 cut(s) 105, 253, 533, 735, 770, 820, 909
HpyCH4III ACNGT 4 cut(s) 225, 514, 582, 592
HpyCH4V TGCA 5 cut(s) 272, 330, 354, 552, 561
HpyF10VI GCNNNNNNNGC 1 cut(s) 558
HpyF3I CTNAG 6 cut(s) 186, 306, 369, 475, 630, 816
Hsp92I GRCGYC 1 cut(s) 789
Hsp92II CATG 6 cut(s) 330, 455, 556, 662, 874, 879
HspAI GCGC 3 cut(s) 556, 651, 939
Kzo9I GATC 4 cut(s) 31, 151, 661, 829
LguI GCTCTTC 1 cut(s) 714
LmnI GCTCC 3 cut(s) 124, 220, 925
Lsp1109I GCAGC 4 cut(s) 346, 545, 635, 723
LweI GCATC 1 cut(s) 687
MaeI CTAG 1 cut(s) 137
MaeIII GTNAC 2 cut(s) 92, 676
MalI GATC 4 cut(s) 33, 153, 663, 831
MboI GATC 4 cut(s) 31, 151, 661, 829
MboII GAAGA 6 cut(s) 218, 518, 518, 731, 803, 979
MflI RGATCY 1 cut(s) 829
MhlI GDGCHC 3 cut(s) 493, 922, 960
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 3 cut(s) 198, 267, 802
MluNI TGGCCA 1 cut(s) 596
MlyI GAGTC 2 cut(s) 26, 634
MmeI TCCRAC 1 cut(s) 950
Mox20I TGGCCA 1 cut(s) 596
MscI TGGCCA 1 cut(s) 596
MseI TTAA 4 cut(s) 144, 461, 741, 843
MslI CAYNNNNRTG 1 cut(s) 223
Msp20I TGGCCA 1 cut(s) 596
MspCI CTTAAG 1 cut(s) 460
MspI CCGG 6 cut(s) 47, 76, 90, 391, 733, 962
MspR9I CCNGG 5 cut(s) 48, 76, 90, 392, 962
MvnI CGCG 1 cut(s) 941
MwoI GCNNNNNNNGC 1 cut(s) 558
NciI CCSGG 5 cut(s) 48, 76, 90, 392, 962
NcoI CCATGG 1 cut(s) 870
NdeII GATC 4 cut(s) 31, 151, 661, 829
NlaIII CATG 6 cut(s) 330, 455, 556, 662, 874, 879
NlaIV GGNNCC 6 cut(s) 117, 216, 490, 831, 921, 959
NmuCI GTSAC 2 cut(s) 92, 676
NspI RCATGY 3 cut(s) 330, 556, 879
PaeI GCATGC 2 cut(s) 330, 556
PagI TCATGA 1 cut(s) 451
PciSI GCTCTTC 1 cut(s) 714
PfeI GAWTC 3 cut(s) 133, 311, 616
PkrI GCNGC 4 cut(s) 361, 560, 650, 738
PleI GAGTC 2 cut(s) 25, 633
PpsI GAGTC 2 cut(s) 25, 633
PspN4I GGNNCC 6 cut(s) 117, 216, 490, 831, 921, 959
PsuI RGATCY 1 cut(s) 829
RsaI GTAC 4 cut(s) 157, 241, 278, 644
RsaNI GTAC 4 cut(s) 156, 240, 277, 643
RseI CAYNNNNRTG 1 cut(s) 223
SapI GCTCTTC 1 cut(s) 714
SaqAI TTAA 4 cut(s) 144, 461, 741, 843
SatI GCNGC 4 cut(s) 360, 559, 649, 737
Sau3AI GATC 4 cut(s) 31, 151, 661, 829
ScaI AGTACT 1 cut(s) 644
SchI GAGTC 2 cut(s) 26, 634
ScrFI CCNGG 5 cut(s) 48, 76, 90, 392, 962
SduI GDGCHC 3 cut(s) 493, 922, 960
SetI ASST 8 cut(s) 70, 144, 361, 476, 688, 824, 849, 948
SfaNI GCATC 1 cut(s) 687
SfcI CTRYAG 2 cut(s) 714, 796
SmiMI CAYNNNNRTG 1 cut(s) 223
SmlI CTYRAG 2 cut(s) 460, 681
SmoI CTYRAG 2 cut(s) 460, 681
SphI GCATGC 2 cut(s) 330, 556
Sse9I AATT 3 cut(s) 198, 267, 802
SsiI CCGC 3 cut(s) 59, 280, 941
SspI AATATT 1 cut(s) 540
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 5 cut(s) 46, 74, 88, 390, 960
StyI CCWWGG 1 cut(s) 870
TaaI ACNGT 4 cut(s) 225, 514, 582, 592
TaqI TCGA 3 cut(s) 470, 702, 948
TaqII GACCGA 1 cut(s) 449
TasI AATT 3 cut(s) 198, 267, 802
TatI WGTACW 1 cut(s) 642
TfiI GAWTC 3 cut(s) 133, 311, 616
Tru1I TTAA 4 cut(s) 144, 461, 741, 843
Tru9I TTAA 4 cut(s) 144, 461, 741, 843
TscAI CASTG 4 cut(s) 279, 356, 580, 902
TseFI GTSAC 2 cut(s) 92, 676
TseI GCWGC 4 cut(s) 359, 558, 648, 736
Tsp45I GTSAC 2 cut(s) 92, 676
TspDTI ATGAA 3 cut(s) 468, 519, 592
TspRI CASTG 4 cut(s) 279, 356, 580, 902
Vha464I CTTAAG 1 cut(s) 460
XapI RAATTY 2 cut(s) 198, 802
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 3 cut(s) 330, 556, 879
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XspI CTAG 1 cut(s) 137
ZrmI AGTACT 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.