pycom09g03440

Cell differentiation protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0013853
Physical Location & Seq
Forward (+)
2553085 .. 2556739
3655 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03440.1

Sequence Viewer

Length: 1119 bp
ATGGCTGCCCTTCCAGAATCTTTGTTGGCCGATCAATCGTCATTACCGGGAGACCAAGCTGGTCAACCTGCATCCCGGCCGCCCCAACCCGGTGACGGCGACCAGTCCAGAAGGGTTCCTGTGGAGCAGTTGATTCTAGAGCTTAACGATGATCGTACCCGAGAAAATGCCCTACAACGCCTCTCTAAGATTAGGGAAATTCGTGAAGACTTGGCTCCATTACTGTGGCACTCATTTGGTACTACATTTACGCTGTTGAAGGAAATAATTGCAGTGTACCGCTTACTTTCAACCCCAAATCTTACTCAGGAATCATCAAATCGGGCATGCAATACTCTCTCTCTCTTTCAGTGCATAGCTGCTCATCCTGAGACAAGAGAACCATTCCTCCGGGCTATTGTGCCGTTCTATATTTACCCTTTCCTCAACACGACGGAAAAGGACAAGCCTCATGAATACTTAAGGCTGTCGAGCTTAGGCGTTATTGGTGCCCTTGACAATGATGAAGAGACTGTTCTTTTCCTTCTCCAAACTCAAATATTCTACCATTGCATGCGCTGCATTGAAGTTGGCACTGGACTGTCAAAAACTGTGGCCACATTCATAATGGAGAGGATTCTGATGAGTCCTGAGGGACAGAAGTACTGCTGCGCTTTCCATGATCGTTTTTTCGTAATCACTCAAGCTCTTACCAAGATGCTCGACAGGATTACTACAGAAGAGCCTTCCCTCCGGCTGCTTAAACTTATCGTTCGTTGCTGTATGAGGCTCGCAGAAGGCCAAAAGGACGCTGACTACAGAAAGTTGTGTCTTCCTAAGAGCTTGAAGGATCCTAAAGTCATTAACCTCATCGCTGACGACCCAACATCCATGGCATGTATGAGACGACTTGTTCAGTGTCTTACAACTGCGAGAAGGGCTCCTCCGACTGACGCAGGTGCGGAGGTCGAAAACGGGCACCCGGTGAAGACTGAACAGGAGTACTCTTTCGCGCCCCACTGGTCACGACCTTACTTGAACAGGATCTGTTCTATAGGTTGTACCTCTGTATCCTTGATCTCTAAGGAGACAGGAACCCCAGTCTGGTGGATGAACCAAGACCGTGCGATCAGAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
Rcd1

Protein Analysis

373

Amino Acids

42.12

Weight (kDa)

7.02

Isoelectric Point (pI)

54.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rcd1 PF04078 44 - 299 4.1e-86 Cell differentiation family, Rcd1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013853)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G12980
fragaria_vesca FvH4_6g42770 FvH4_6g42770
malus_domestica MD09G1071800.v1.1
prunus_persica Prupe.3G214100_v2.0.a1 Prupe.3G214100_v2.0.a1
pyrus_communis pycom09g03440
rosa_chinensis RchiOBHm_Chr2g0158671
rosa_laevigata RLG00000021105
rosa_multiflora Rmu_sc0004188.1_g000011
rosa_roxburghii Rroxscaffold_2G00091120
rosa_rugosa Rorug02G0471300
rosa_samantha Rh2AG537100 Rh2BG550300 Rh2CG520800 Rh2DG559900
rosa_wichuraiana Rw2G044470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 926
Acc36I ACCTGC 2 cut(s) 76, 926
AccB1I GGYRCC 2 cut(s) 488, 957
AccII CGCG 1 cut(s) 992
AciI CCGC 3 cut(s) 80, 280, 941
AclWI GGATC 3 cut(s) 824, 837, 1031
AcoI YGGCCR 3 cut(s) 27, 77, 594
AcsI RAATTY 1 cut(s) 198
AdeI CACNNNGTG 1 cut(s) 964
AfaI GTAC 6 cut(s) 157, 241, 278, 644, 983, 1042
AfiI CCNNNNNNNGG 3 cut(s) 89, 95, 1083
AflII CTTAAG 1 cut(s) 460
AgsI TTSAA 5 cut(s) 259, 291, 566, 826, 1018
AloI GAACNNNNNNTCC 2 cut(s) 372, 404
AluBI AGCT 6 cut(s) 59, 142, 359, 474, 686, 822
AluI AGCT 6 cut(s) 59, 142, 359, 474, 686, 822
Alw26I GTCTC 5 cut(s) 45, 365, 503, 877, 1061
AlwI GGATC 3 cut(s) 824, 837, 1031
AlwNI CAGNNNCTG 1 cut(s) 1026
Ama87I CYCGRG 1 cut(s) 159
AoxI GGCC 4 cut(s) 27, 77, 594, 778
ApeKI GCWGC 5 cut(s) 5, 359, 558, 648, 736
ApoI RAATTY 1 cut(s) 198
AspLEI GCGC 3 cut(s) 558, 653, 994
AsuC2I CCSGG 5 cut(s) 48, 76, 90, 392, 962
AsuHPI GGTGA 2 cut(s) 104, 976
AvaI CYCGRG 1 cut(s) 159
AxyI CCTNAGG 1 cut(s) 630
BaeGI GKGCMC 2 cut(s) 493, 960
BaeI ACNNNNGTAYC 2 cut(s) 1032, 1065
BalI TGGCCA 1 cut(s) 596
BamHI GGATCC 1 cut(s) 829
BanI GGYRCC 2 cut(s) 488, 957
BanII GRGCYC 1 cut(s) 922
BbsI GAAGAC 3 cut(s) 213, 803, 974
BbvI GCAGC 4 cut(s) 346, 545, 635, 723
BceAI ACGGC 2 cut(s) 112, 388
BciVI GTATCC 1 cut(s) 1060
BcnI CCSGG 5 cut(s) 48, 76, 90, 392, 962
BcoDI GTCTC 5 cut(s) 45, 365, 503, 877, 1061
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 3 cut(s) 714, 796, 1032
BfrI CTTAAG 1 cut(s) 460
BfuAI ACCTGC 2 cut(s) 76, 926
BfuI GTATCC 1 cut(s) 1060
BisI GCNGC 6 cut(s) 6, 80, 360, 559, 649, 737
BlsI GCNGC 6 cut(s) 7, 81, 361, 560, 650, 738
BmcAI AGTACT 2 cut(s) 644, 983
Bme1390I CCNGG 5 cut(s) 48, 76, 90, 392, 962
BmeT110I CYCGRG 1 cut(s) 159
BmiI GGNNCC 7 cut(s) 117, 216, 490, 831, 921, 959, 1075
BmrFI CCNGG 5 cut(s) 48, 76, 90, 392, 962
BmrI ACTGGG 1 cut(s) 1073
BmsI GCATC 2 cut(s) 80, 687
BmuI ACTGGG 1 cut(s) 1073
BpiI GAAGAC 3 cut(s) 213, 803, 974
BplI GAGNNNNNCTC 2 cut(s) 904, 936
Bpu10I CCTNAGC 1 cut(s) 475
BpuEI CTTGAG 1 cut(s) 666
BpuMI CCSGG 5 cut(s) 48, 76, 90, 392, 962
BsaI GGTCTC 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 870
BsaXI ACNNNNNCTCC 2 cut(s) 372, 402
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 95, 1083
Bse1I ACTGG 4 cut(s) 103, 580, 1004, 1079
Bse21I CCTNAGG 1 cut(s) 630
Bse3DI GCAATG 1 cut(s) 547
BseDI CCNNGG 1 cut(s) 870
BseGI GGATG 4 cut(s) 71, 364, 866, 1095
BseLI CCNNNNNNNGG 3 cut(s) 89, 95, 1083
BseMI GCAATG 1 cut(s) 547
BseMII CTCAG 3 cut(s) 320, 360, 621
BseNI ACTGG 4 cut(s) 103, 580, 1004, 1079
BseRI GAGGAG 1 cut(s) 912
BseSI GKGCMC 2 cut(s) 493, 960
BseX3I CGGCCG 1 cut(s) 77
BseXI GCAGC 4 cut(s) 346, 545, 635, 723
Bsh1236I CGCG 1 cut(s) 992
Bsh1285I CGRYCG 1 cut(s) 80
BshFI GGCC 4 cut(s) 29, 79, 596, 780
BshNI GGYRCC 2 cut(s) 488, 957
BsiEI CGRYCG 1 cut(s) 80
BsiHKCI CYCGRG 1 cut(s) 159
BsiSI CCGG 6 cut(s) 47, 76, 90, 391, 733, 962
BslFI GGGAC 1 cut(s) 648
BslI CCNNNNNNNGG 3 cut(s) 89, 95, 1083
BsmAI GTCTC 5 cut(s) 45, 365, 503, 877, 1061
BsmBI CGTCTC 1 cut(s) 877
BsmFI GGGAC 1 cut(s) 648
BsnI GGCC 4 cut(s) 29, 79, 596, 780
Bso31I GGTCTC 1 cut(s) 45
BsoBI CYCGRG 1 cut(s) 159
Bsp1286I GDGCHC 3 cut(s) 493, 922, 960
Bsp143I GATC 7 cut(s) 31, 151, 661, 829, 1023, 1056, 1107
Bsp19I CCATGG 1 cut(s) 870
BspACI CCGC 3 cut(s) 80, 280, 941
BspANI GGCC 4 cut(s) 29, 79, 596, 780
BspCNI CTCAG 3 cut(s) 319, 361, 622
BspFNI CGCG 1 cut(s) 992
BspHI TCATGA 1 cut(s) 451
BspLI GGNNCC 7 cut(s) 117, 216, 490, 831, 921, 959, 1075
BspMI ACCTGC 2 cut(s) 76, 926
BspPI GGATC 3 cut(s) 824, 837, 1031
BspQI GCTCTTC 1 cut(s) 714
BspT107I GGYRCC 2 cut(s) 488, 957
BspTI CTTAAG 1 cut(s) 460
BspTNI GGTCTC 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 547
BsrI ACTGG 4 cut(s) 103, 580, 1004, 1079
BssECI CCNNGG 1 cut(s) 870
BssMI GATC 7 cut(s) 31, 151, 661, 829, 1023, 1056, 1107
BssT1I CCWWGG 1 cut(s) 870
Bst4CI ACNGT 5 cut(s) 225, 514, 582, 592, 1103
Bst6I CTCTTC 2 cut(s) 501, 714
BstAFI CTTAAG 1 cut(s) 460
BstAPI GCANNNNNTGC 1 cut(s) 558
BstC8I GCNNGC 3 cut(s) 328, 554, 771
BstDEI CTNAG 7 cut(s) 186, 306, 369, 475, 630, 816, 1062
BstDSI CCRYGG 1 cut(s) 870
BstF5I GGATG 4 cut(s) 71, 364, 866, 1095
BstFNI CGCG 1 cut(s) 992
BstHHI GCGC 3 cut(s) 558, 653, 994
BstKTI GATC 7 cut(s) 34, 154, 664, 832, 1026, 1059, 1110
BstMAI GTCTC 5 cut(s) 45, 365, 503, 877, 1061
BstMBI GATC 7 cut(s) 31, 151, 661, 829, 1023, 1056, 1107
BstMCI CGRYCG 1 cut(s) 80
BstMWI GCNNNNNNNGC 3 cut(s) 558, 917, 1112
BstNSI RCATGY 3 cut(s) 330, 556, 879
BstSCI CCNGG 5 cut(s) 46, 74, 88, 390, 960
BstSFI CTRYAG 3 cut(s) 714, 796, 1032
BstSLI GKGCMC 2 cut(s) 493, 960
BstUI CGCG 1 cut(s) 992
BstV1I GCAGC 4 cut(s) 346, 545, 635, 723
BstV2I GAAGAC 3 cut(s) 213, 803, 974
BstX2I RGATCY 2 cut(s) 829, 1023
BstXI CCANNNNNNTGG 2 cut(s) 225, 1086
BstYI RGATCY 2 cut(s) 829, 1023
BstZI CGGCCG 1 cut(s) 77
Bsu36I CCTNAGG 1 cut(s) 630
BsuI GTATCC 1 cut(s) 1060
BsuRI GGCC 4 cut(s) 29, 79, 596, 780
BtgI CCRYGG 1 cut(s) 870
BtgZI GCGATG 1 cut(s) 835
BtsCI GGATG 4 cut(s) 71, 364, 866, 1095
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 5 cut(s) 279, 356, 573, 902, 997
BveI ACCTGC 2 cut(s) 76, 926
Cac8I GCNNGC 3 cut(s) 328, 554, 771
CaiI CAGNNNCTG 1 cut(s) 1026
CciI TCATGA 1 cut(s) 451
CfoI GCGC 3 cut(s) 558, 653, 994
CseI GACGC 2 cut(s) 797, 941
Csp6I GTAC 6 cut(s) 156, 240, 277, 643, 982, 1041
CspCI CAANNNNNGTGG 2 cut(s) 573, 608
CviAII CATG 6 cut(s) 327, 452, 553, 659, 871, 876
CviQI GTAC 6 cut(s) 156, 240, 277, 643, 982, 1041
DdeI CTNAG 7 cut(s) 186, 306, 369, 475, 630, 816, 1062
DpnI GATC 7 cut(s) 33, 153, 663, 831, 1025, 1058, 1109
DpnII GATC 7 cut(s) 31, 151, 661, 829, 1023, 1056, 1107
DraIII CACNNNGTG 1 cut(s) 964
EaeI YGGCCR 3 cut(s) 27, 77, 594
EagI CGGCCG 1 cut(s) 77
Eam1104I CTCTTC 2 cut(s) 501, 714
EarI CTCTTC 2 cut(s) 501, 714
EclXI CGGCCG 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 870
Eco24I GRGCYC 1 cut(s) 922
Eco31I GGTCTC 1 cut(s) 45
Eco52I CGGCCG 1 cut(s) 77
Eco81I CCTNAGG 1 cut(s) 630
Eco88I CYCGRG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 870
EcoT38I GRGCYC 1 cut(s) 922
ErhI CCWWGG 1 cut(s) 870
Esp3I CGTCTC 1 cut(s) 877
FaeI CATG 6 cut(s) 330, 455, 556, 662, 874, 879
FaqI GGGAC 1 cut(s) 648
FatI CATG 6 cut(s) 326, 451, 552, 658, 870, 875
Fnu4HI GCNGC 6 cut(s) 6, 80, 360, 559, 649, 737
FokI GGATG 4 cut(s) 58, 351, 853, 1102
FriOI GRGCYC 1 cut(s) 922
Fsp4HI GCNGC 6 cut(s) 6, 80, 360, 559, 649, 737
FspBI CTAG 1 cut(s) 137
GlaI GCGC 3 cut(s) 557, 652, 993
GluI GCNGC 6 cut(s) 6, 80, 360, 559, 649, 737
HaeIII GGCC 4 cut(s) 29, 79, 596, 780
HapII CCGG 6 cut(s) 47, 76, 90, 391, 733, 962
HgaI GACGC 2 cut(s) 797, 941
HhaI GCGC 3 cut(s) 558, 653, 994
Hin1II CATG 6 cut(s) 330, 455, 556, 662, 874, 879
Hin6I GCGC 3 cut(s) 556, 651, 992
HinP1I GCGC 3 cut(s) 556, 651, 992
HincII GTYRAC 1 cut(s) 65
HindII GTYRAC 1 cut(s) 65
HinfI GANTC 5 cut(s) 17, 133, 311, 616, 625
HpaII CCGG 6 cut(s) 47, 76, 90, 391, 733, 962
HphI GGTGA 2 cut(s) 104, 976
Hpy166II GTNNAC 2 cut(s) 65, 277
Hpy188I TCNGA 3 cut(s) 621, 927, 1112
Hpy188III TCNNGA 9 cut(s) 14, 108, 137, 203, 308, 368, 452, 629, 1005
Hpy8I GTNNAC 2 cut(s) 65, 277
Hpy99I CGWCG 1 cut(s) 436
HpyAV CCTTC 8 cut(s) 20, 105, 253, 533, 735, 770, 820, 909
HpyCH4III ACNGT 5 cut(s) 225, 514, 582, 592, 1103
HpyCH4V TGCA 6 cut(s) 71, 272, 330, 354, 552, 561
HpyF10VI GCNNNNNNNGC 3 cut(s) 558, 917, 1112
HpyF3I CTNAG 7 cut(s) 186, 306, 369, 475, 630, 816, 1062
Hsp92II CATG 6 cut(s) 330, 455, 556, 662, 874, 879
HspAI GCGC 3 cut(s) 556, 651, 992
Kzo9I GATC 7 cut(s) 31, 151, 661, 829, 1023, 1056, 1107
LguI GCTCTTC 1 cut(s) 714
LmnI GCTCC 3 cut(s) 124, 220, 925
Lsp1109I GCAGC 4 cut(s) 346, 545, 635, 723
LweI GCATC 2 cut(s) 80, 687
MaeI CTAG 1 cut(s) 137
MaeIII GTNAC 2 cut(s) 92, 1002
MalI GATC 7 cut(s) 33, 153, 663, 831, 1025, 1058, 1109
MboI GATC 7 cut(s) 31, 151, 661, 829, 1023, 1056, 1107
MboII GAAGA 5 cut(s) 218, 518, 731, 803, 979
MflI RGATCY 2 cut(s) 829, 1023
MhlI GDGCHC 3 cut(s) 493, 922, 960
MlsI TGGCCA 1 cut(s) 596
MluCI AATT 2 cut(s) 198, 267
MluNI TGGCCA 1 cut(s) 596
MlyI GAGTC 1 cut(s) 634
MmeI TCCRAC 1 cut(s) 950
Mox20I TGGCCA 1 cut(s) 596
MscI TGGCCA 1 cut(s) 596
MseI TTAA 4 cut(s) 144, 461, 741, 843
MslI CAYNNNNRTG 1 cut(s) 223
Msp20I TGGCCA 1 cut(s) 596
MspCI CTTAAG 1 cut(s) 460
MspI CCGG 6 cut(s) 47, 76, 90, 391, 733, 962
MspR9I CCNGG 5 cut(s) 48, 76, 90, 392, 962
MvnI CGCG 1 cut(s) 992
MwoI GCNNNNNNNGC 3 cut(s) 558, 917, 1112
NciI CCSGG 5 cut(s) 48, 76, 90, 392, 962
NcoI CCATGG 1 cut(s) 870
NdeII GATC 7 cut(s) 31, 151, 661, 829, 1023, 1056, 1107
NlaIII CATG 6 cut(s) 330, 455, 556, 662, 874, 879
NlaIV GGNNCC 7 cut(s) 117, 216, 490, 831, 921, 959, 1075
NmuCI GTSAC 2 cut(s) 92, 1002
NspI RCATGY 3 cut(s) 330, 556, 879
PaeI GCATGC 2 cut(s) 330, 556
PagI TCATGA 1 cut(s) 451
PaqCI CACCTGC 1 cut(s) 926
PciSI GCTCTTC 1 cut(s) 714
PfeI GAWTC 4 cut(s) 17, 133, 311, 616
PkrI GCNGC 6 cut(s) 7, 81, 361, 560, 650, 738
PleI GAGTC 1 cut(s) 633
PpsI GAGTC 1 cut(s) 633
PspN4I GGNNCC 7 cut(s) 117, 216, 490, 831, 921, 959, 1075
PstNI CAGNNNCTG 1 cut(s) 1026
PsuI RGATCY 2 cut(s) 829, 1023
RsaI GTAC 6 cut(s) 157, 241, 278, 644, 983, 1042
RsaNI GTAC 6 cut(s) 156, 240, 277, 643, 982, 1041
RseI CAYNNNNRTG 1 cut(s) 223
SapI GCTCTTC 1 cut(s) 714
SaqAI TTAA 4 cut(s) 144, 461, 741, 843
SatI GCNGC 6 cut(s) 6, 80, 360, 559, 649, 737
Sau3AI GATC 7 cut(s) 31, 151, 661, 829, 1023, 1056, 1107
ScaI AGTACT 2 cut(s) 644, 983
SchI GAGTC 1 cut(s) 634
ScrFI CCNGG 5 cut(s) 48, 76, 90, 392, 962
SduI GDGCHC 3 cut(s) 493, 922, 960
SfaNI GCATC 2 cut(s) 80, 687
SfcI CTRYAG 3 cut(s) 714, 796, 1032
SmiMI CAYNNNNRTG 1 cut(s) 223
SmlI CTYRAG 2 cut(s) 460, 681
SmoI CTYRAG 2 cut(s) 460, 681
SphI GCATGC 2 cut(s) 330, 556
Sse9I AATT 2 cut(s) 198, 267
SsiI CCGC 3 cut(s) 80, 280, 941
SspI AATATT 1 cut(s) 540
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 5 cut(s) 46, 74, 88, 390, 960
StyI CCWWGG 1 cut(s) 870
TaaI ACNGT 5 cut(s) 225, 514, 582, 592, 1103
TaqI TCGA 3 cut(s) 470, 702, 948
TasI AATT 2 cut(s) 198, 267
TatI WGTACW 2 cut(s) 642, 981
TauI GCSGC 1 cut(s) 82
TfiI GAWTC 4 cut(s) 17, 133, 311, 616
Tru1I TTAA 4 cut(s) 144, 461, 741, 843
Tru9I TTAA 4 cut(s) 144, 461, 741, 843
TscAI CASTG 5 cut(s) 279, 356, 580, 902, 1004
TseFI GTSAC 2 cut(s) 92, 1002
TseI GCWGC 5 cut(s) 5, 359, 558, 648, 736
Tsp45I GTSAC 2 cut(s) 92, 1002
TspDTI ATGAA 4 cut(s) 468, 519, 592, 1106
TspGWI ACGGA 1 cut(s) 449
TspRI CASTG 5 cut(s) 279, 356, 580, 902, 1004
Vha464I CTTAAG 1 cut(s) 460
XapI RAATTY 1 cut(s) 198
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 3 cut(s) 330, 556, 879
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XspI CTAG 1 cut(s) 137
ZrmI AGTACT 2 cut(s) 644, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.