AT5G13190

Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012424
Physical Location & Seq
Reverse (-)
4204085 .. 4206475
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13190.2

Sequence Viewer

Length: 405 bp
ATGGCGAAAGAGGGAACAACGGTGATCGGAGTTCCATATTACGCGGGGCAGAATCCGTATCAGGCCGGAATTGTGCCGCCGAATGCTATCTATGGTGATCCGTTGGGTGCTCCGATTCAGCAAACGATTTATCGAGACACTCCTGCTCCTTTCAATTGCCTTTATTGCGGCAACACTGGTCTCACCAATCTCAGATCGAAACCTGGTGTAGCTGCTGTTGTTGCTTGCATGATGCCGTTTATGCTTGGTTTCTGCTTTCTCTGCCCTTCAATGGATTGCCTCTGGAACAAACAGCACCATTGCCCTCAGTGTGGGAACAAGGTTGCTGACTTTGAGAAATCAGATCCCTGCCTGGTGATGGATCCGCCACAGTGGAAGCAACCTAGTTTCGCACTCCCAGCATGA

Protein Analysis

134

Amino Acids

14.56

Weight (kDa)

6.67

Isoelectric Point (pI)

55.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-LITAF-like PF10601 46 - 109 5.9e-13 LITAF-like zinc ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13190 AT5G13190
fragaria_vesca FvH4_4g23080 FvH4_4g23080
malus_domestica MD13G1126300.v1.1 MD16G1126800.v1.1
prunus_persica Prupe.1G219100_v2.0.a1
pyrus_communis pycom13g10980 pycom16g10760
rosa_chinensis RchiOBHm_Chr4g0429351
rosa_multiflora Rmu_sc0003708.1_g000047 Rmu_sc0003904.1_g000002
rosa_roxburghii Rroxscaffold_5G00370960
rosa_rugosa Rorug04G0235200
rosa_samantha Rh4AG291000 Rh4BG296900 Rh4CG312400 Rh4DG293800
rosa_wichuraiana Rw4G025200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 44
AciI CCGC 4 cut(s) 44, 77, 168, 365
AclWI GGATC 4 cut(s) 92, 338, 356, 369
AfiI CCNNNNNNNGG 3 cut(s) 271, 311, 358
AgsI TTSAA 2 cut(s) 154, 270
AjnI CCWGG 2 cut(s) 202, 351
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
Alw21I GWGCWC 1 cut(s) 112
Alw26I GTCTC 2 cut(s) 129, 185
AlwI GGATC 4 cut(s) 92, 338, 356, 369
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 212
AsuHPI GGTGA 4 cut(s) 34, 107, 175, 367
BamHI GGATCC 1 cut(s) 361
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 199
BccI CCATC 1 cut(s) 352
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 2 cut(s) 204, 353
BcoDI GTCTC 2 cut(s) 129, 185
BfaI CTAG 1 cut(s) 384
BisI GCNGC 3 cut(s) 77, 169, 213
BlsI GCNGC 3 cut(s) 78, 170, 214
Bme1390I CCNGG 2 cut(s) 204, 353
BmiI GGNNCC 1 cut(s) 363
BmrFI CCNGG 2 cut(s) 204, 353
BmsI GCATC 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 3 cut(s) 271, 311, 358
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 298
BseBI CCWGG 2 cut(s) 204, 353
BseLI CCNNNNNNNGG 3 cut(s) 271, 311, 358
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 2 cut(s) 205, 320
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 199
BseYI CCCAGC 1 cut(s) 397
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 112
BsiSI CCGG 1 cut(s) 66
BslI CCNNNNNNNGG 3 cut(s) 271, 311, 358
BsmAI GTCTC 2 cut(s) 129, 185
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 1 cut(s) 65
Bso31I GGTCTC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 5 cut(s) 24, 97, 194, 343, 361
BspACI CCGC 4 cut(s) 44, 77, 168, 365
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 2 cut(s) 204, 319
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 363
BspPI GGATC 4 cut(s) 92, 338, 356, 369
BspTNI GGTCTC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 298
BsrI ACTGG 1 cut(s) 181
BssMI GATC 5 cut(s) 24, 97, 194, 343, 361
Bst2UI CCWGG 2 cut(s) 204, 353
Bst4CI ACNGT 2 cut(s) 22, 372
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 2 cut(s) 191, 306
BstFNI CGCG 1 cut(s) 44
BstKTI GATC 5 cut(s) 27, 100, 197, 346, 364
BstMAI GTCTC 2 cut(s) 129, 185
BstMBI GATC 5 cut(s) 24, 97, 194, 343, 361
BstMWI GCNNNNNNNGC 5 cut(s) 165, 221, 241, 261, 398
BstNI CCWGG 2 cut(s) 204, 353
BstSCI CCNGG 2 cut(s) 202, 351
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 199
BstX2I RGATCY 2 cut(s) 343, 361
BstYI RGATCY 2 cut(s) 343, 361
BsuRI GGCC 1 cut(s) 65
BtsIMutI CAGTG 3 cut(s) 174, 314, 377
Cac8I GCNNGC 1 cut(s) 226
CsiI ACCWGGT 1 cut(s) 202
CviAII CATG 2 cut(s) 229, 402
CviJI RGCY 2 cut(s) 65, 212
CviKI_1 RGCY 2 cut(s) 65, 212
DdeI CTNAG 2 cut(s) 191, 306
DpnI GATC 5 cut(s) 26, 99, 196, 345, 363
DpnII GATC 5 cut(s) 24, 97, 194, 343, 361
EciI GGCGGA 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 185
EcoRII CCWGG 2 cut(s) 202, 351
FaeI CATG 2 cut(s) 232, 405
FaiI YATR 5 cut(s) 37, 93, 230, 242, 403
FatI CATG 2 cut(s) 228, 401
FauI CCCGC 1 cut(s) 37
Fnu4HI GCNGC 3 cut(s) 77, 169, 213
Fsp4HI GCNGC 3 cut(s) 77, 169, 213
FspBI CTAG 1 cut(s) 384
GluI GCNGC 3 cut(s) 77, 169, 213
GsaI CCCAGC 1 cut(s) 401
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 66
Hin1II CATG 2 cut(s) 232, 405
HinfI GANTC 2 cut(s) 52, 115
HpaII CCGG 1 cut(s) 66
HphI GGTGA 4 cut(s) 34, 107, 175, 367
Hpy188I TCNGA 4 cut(s) 29, 114, 194, 343
Hpy188III TCNNGA 2 cut(s) 134, 283
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 2 cut(s) 22, 372
HpyCH4V TGCA 1 cut(s) 228
HpyF10VI GCNNNNNNNGC 5 cut(s) 165, 221, 241, 261, 398
HpyF3I CTNAG 2 cut(s) 191, 306
Hsp92II CATG 2 cut(s) 232, 405
Kzo9I GATC 5 cut(s) 24, 97, 194, 343, 361
LmnI GCTCC 2 cut(s) 115, 151
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 1 cut(s) 222
MabI ACCWGGT 1 cut(s) 202
MaeI CTAG 1 cut(s) 384
MalI GATC 5 cut(s) 26, 99, 196, 345, 363
MboI GATC 5 cut(s) 24, 97, 194, 343, 361
MfeI CAATTG 1 cut(s) 154
MflI RGATCY 2 cut(s) 343, 361
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 2 cut(s) 69, 154
MnlI CCTC 3 cut(s) 4, 290, 315
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 2 cut(s) 204, 353
MunI CAATTG 1 cut(s) 154
Mva1269I GAATGC 1 cut(s) 88
MvaI CCWGG 2 cut(s) 204, 353
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 5 cut(s) 165, 221, 241, 261, 398
NdeII GATC 5 cut(s) 24, 97, 194, 343, 361
NlaIII CATG 2 cut(s) 232, 405
NlaIV GGNNCC 1 cut(s) 363
PctI GAATGC 1 cut(s) 88
PfeI GAWTC 2 cut(s) 52, 115
PkrI GCNGC 3 cut(s) 78, 170, 214
Psp6I CCWGG 2 cut(s) 202, 351
PspFI CCCAGC 1 cut(s) 397
PspGI CCWGG 2 cut(s) 202, 351
PspN4I GGNNCC 1 cut(s) 363
PsuI RGATCY 2 cut(s) 343, 361
SatI GCNGC 3 cut(s) 77, 169, 213
Sau3AI GATC 5 cut(s) 24, 97, 194, 343, 361
ScrFI CCNGG 2 cut(s) 204, 353
SduI GDGCHC 1 cut(s) 112
SetI ASST 4 cut(s) 205, 214, 324, 385
SexAI ACCWGGT 1 cut(s) 202
SfaNI GCATC 1 cut(s) 222
Sse9I AATT 2 cut(s) 69, 154
SsiI CCGC 4 cut(s) 44, 77, 168, 365
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 2 cut(s) 202, 351
TaaI ACNGT 2 cut(s) 22, 372
TaqI TCGA 2 cut(s) 133, 197
TasI AATT 2 cut(s) 69, 154
TauI GCSGC 2 cut(s) 79, 171
TfiI GAWTC 2 cut(s) 52, 115
TscAI CASTG 3 cut(s) 181, 314, 377
TseI GCWGC 1 cut(s) 212
TspGWI ACGGA 2 cut(s) 45, 90
TspRI CASTG 3 cut(s) 181, 314, 377
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.