Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012424

Physical Location & Seq

Genomic Coordinates Forward (+)

25660067 .. 25662761

Gene Structure 2695 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCAAGGATACCCGCCGCAACAAGCAGAGATGTCGAAGATGCCGCCGCAGCAGCAGCAGCAACCGGTGATGGGAGAGCCGGTGATGGGAGTCCCTTACTACGTTCGTGAGAATCCCTACCAGGCCGGCATGATTCCCCCCAACGCCATTTACGGCGACCCAAAAGGGGTCCCTCTTCAGCAAACCATCTACAGAGACACTCCCGCTCCTTTCAACTGCCTTTACTGCGGCGACACCGGTCTCACCACCGTCAGATCAAAGCGGAGTCTGGCATCTGTTGTGGGGTGTTTGACGTTCTGTGGTTGTGGGTTCTGCTTTCTTTTGCGTTCCATGGACTGTCTCTGGCATAAGCAGCATTATTGCTCACATTGCCACCAAAAGGTTGCTGATTTTGAGAAGTCTGATCCTTGTATTGTAATGGACCCTCCTAACTGGACAGAAGCCAGCTTTGCAGTACCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0005575 GO:0005623 GO:0005886 GO:0008150 GO:0010363 GO:0010941 GO:0016020 GO:0031347 GO:0031348 GO:0034051 GO:0043067 GO:0043069 GO:0044464 GO:0045088 GO:0045824 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0060548 GO:0065007 GO:0071944 GO:0080134 GO:0080135

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

zf-LITAF-like

Protein Analysis

155

Amino Acids

17.2

Weight (kDa)

6.38

Isoelectric Point (pI)

67.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-LITAF-like	PF10601	66 - 130	9.6e-12	LITAF-like zinc ribbon domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13190 AT5G13190
fragaria_vesca	FvH4_4g23080 FvH4_4g23080
malus_domestica	MD13G1126300.v1.1 MD16G1126800.v1.1
prunus_persica	Prupe.1G219100_v2.0.a1
pyrus_communis	pycom13g10980 pycom16g10760
rosa_chinensis	RchiOBHm_Chr4g0429351
rosa_multiflora	Rmu_sc0003708.1_g000047 Rmu_sc0003904.1_g000002
rosa_roxburghii	Rroxscaffold_5G00370960
rosa_rugosa	Rorug04G0235200
rosa_samantha	Rh4AG291000 Rh4BG296900 Rh4CG312400 Rh4DG293800
rosa_wichuraiana	Rw4G025200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	206
AciI	CCGC	7 cut(s)	14, 17, 44, 47, 204, 228, 262
AclWI	GGATC	1 cut(s)	398
AcuI	CTGAAG	1 cut(s)	161
AfaI	GTAC	1 cut(s)	456
AfiI	CCNNNNNNNGG	4 cut(s)	71, 86, 166, 379
AgeI	ACCGGT	2 cut(s)	64, 236
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	1 cut(s)	447
AluI	AGCT	1 cut(s)	447
Alw26I	GTCTC	3 cut(s)	189, 245, 344
AlwI	GGATC	1 cut(s)	398
AlwNI	CAGNNNCTG	1 cut(s)	458
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	5 cut(s)	49, 52, 55, 58, 352
AsiGI	ACCGGT	2 cut(s)	64, 236
AspS9I	GGNCC	2 cut(s)	169, 421
AsuHPI	GGTGA	3 cut(s)	79, 94, 235
AvaII	GGWCC	2 cut(s)	169, 421
BbvI	GCAGC	5 cut(s)	61, 64, 67, 70, 364
BccI	CCATC	3 cut(s)	64, 79, 194
BceAI	ACGGC	1 cut(s)	169
BcgI	CGANNNNNNTGC	2 cut(s)	15, 49
BciT130I	CCWGG	1 cut(s)	122
BcoDI	GTCTC	3 cut(s)	189, 245, 344
BfmI	CTRYAG	1 cut(s)	190
BisI	GCNGC	9 cut(s)	17, 44, 47, 50, 53, 56, 59, 229, 353
BlsI	GCNGC	9 cut(s)	18, 45, 48, 51, 54, 57, 60, 230, 354
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	2 cut(s)	169, 421
BmgT120I	GGNCC	2 cut(s)	169, 421
BmiI	GGNNCC	3 cut(s)	170, 171, 423
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	2 cut(s)	30, 281
BoxI	GACNNNNGTC	1 cut(s)	237
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	330
BsaWI	WCCGGW	2 cut(s)	64, 236
BsaXI	ACNNNNNCTCC	4 cut(s)	66, 96, 190, 220
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 86, 166, 379
Bse118I	RCCGGY	4 cut(s)	64, 79, 125, 236
Bse1I	ACTGG	1 cut(s)	437
Bse3DI	GCAATG	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	330
BseLI	CCNNNNNNNGG	4 cut(s)	71, 86, 166, 379
BseMI	GCAATG	1 cut(s)	367
BseNI	ACTGG	1 cut(s)	437
BseXI	GCAGC	5 cut(s)	61, 64, 67, 70, 364
BshFI	GGCC	1 cut(s)	125
BshTI	ACCGGT	2 cut(s)	64, 236
BsiSI	CCGG	4 cut(s)	65, 80, 126, 237
BslFI	GGGAC	2 cut(s)	77, 155
BslI	CCNNNNNNNGG	4 cut(s)	71, 86, 166, 379
BsmAI	GTCTC	3 cut(s)	189, 245, 344
BsmFI	GGGAC	2 cut(s)	77, 155
BsnI	GGCC	1 cut(s)	125
Bso31I	GGTCTC	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	254, 403
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	7 cut(s)	14, 17, 44, 47, 204, 228, 262
BspANI	GGCC	1 cut(s)	125
BspLI	GGNNCC	3 cut(s)	170, 171, 423
BspPI	GGATC	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	206
BsrDI	GCAATG	1 cut(s)	367
BsrFI	RCCGGY	4 cut(s)	64, 79, 125, 236
BsrI	ACTGG	1 cut(s)	437
BssAI	RCCGGY	4 cut(s)	64, 79, 125, 236
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	2 cut(s)	254, 403
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	250, 338
Bst6I	CTCTTC	1 cut(s)	180
BstAPI	GCANNNNNTGC	1 cut(s)	458
BstC8I	GCNNGC	2 cut(s)	127, 445
BstDSI	CCRYGG	1 cut(s)	330
BstKTI	GATC	2 cut(s)	257, 406
BstMAI	GTCTC	3 cut(s)	189, 245, 344
BstMBI	GATC	2 cut(s)	254, 403
BstMWI	GCNNNNNNNGC	9 cut(s)	49, 52, 55, 58, 225, 352, 369, 449, 458
BstNI	CCWGG	1 cut(s)	122
BstPAI	GACNNNNGTC	1 cut(s)	237
BstSCI	CCNGG	1 cut(s)	120
BstSFI	CTRYAG	1 cut(s)	190
BstV1I	GCAGC	5 cut(s)	61, 64, 67, 70, 364
BsuRI	GGCC	1 cut(s)	125
BtgI	CCRYGG	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	127, 445
CaiI	CAGNNNCTG	1 cut(s)	458
Cfr10I	RCCGGY	4 cut(s)	64, 79, 125, 236
Cfr13I	GGNCC	2 cut(s)	169, 421
Csp6I	GTAC	1 cut(s)	455
CspAI	ACCGGT	2 cut(s)	64, 236
CviAII	CATG	3 cut(s)	130, 331, 462
CviJI	RGCY	4 cut(s)	79, 125, 443, 447
CviKI_1	RGCY	4 cut(s)	79, 125, 443, 447
CviQI	GTAC	1 cut(s)	455
DpnI	GATC	2 cut(s)	256, 405
DpnII	GATC	2 cut(s)	254, 403
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	330
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	2 cut(s)	169, 421
Eco57I	CTGAAG	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	3 cut(s)	133, 334, 465
FaiI	YATR	4 cut(s)	131, 332, 348, 463
FaqI	GGGAC	2 cut(s)	77, 155
FatI	CATG	3 cut(s)	129, 330, 461
FauI	CCCGC	2 cut(s)	21, 211
Fnu4HI	GCNGC	9 cut(s)	17, 44, 47, 50, 53, 56, 59, 229, 353
Fsp4HI	GCNGC	9 cut(s)	17, 44, 47, 50, 53, 56, 59, 229, 353
GluI	GCNGC	9 cut(s)	17, 44, 47, 50, 53, 56, 59, 229, 353
HaeIII	GGCC	1 cut(s)	125
HapII	CCGG	4 cut(s)	65, 80, 126, 237
Hin1II	CATG	3 cut(s)	133, 334, 465
HinfI	GANTC	4 cut(s)	90, 112, 133, 265
HpaII	CCGG	4 cut(s)	65, 80, 126, 237
HphI	GGTGA	3 cut(s)	79, 94, 235
Hpy188I	TCNGA	2 cut(s)	254, 403
Hpy188III	TCNNGA	1 cut(s)	107
HpyCH4III	ACNGT	2 cut(s)	250, 338
HpyCH4IV	ACGT	2 cut(s)	102, 293
HpyCH4V	TGCA	3 cut(s)	4, 452, 461
HpyF10VI	GCNNNNNNNGC	9 cut(s)	49, 52, 55, 58, 225, 352, 369, 449, 458
HpySE526I	ACGT	2 cut(s)	102, 293
Hsp92II	CATG	3 cut(s)	133, 334, 465
KflI	GGGWCCC	1 cut(s)	169
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	254, 403
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	5 cut(s)	61, 64, 67, 70, 364
LweI	GCATC	2 cut(s)	30, 281
MaeII	ACGT	2 cut(s)	102, 293
MalI	GATC	2 cut(s)	256, 405
MbiI	CCGCTC	1 cut(s)	206
MboI	GATC	2 cut(s)	254, 403
MboII	GAAGA	2 cut(s)	49, 167
MlyI	GAGTC	2 cut(s)	99, 274
MnlI	CCTC	2 cut(s)	183, 435
MroNI	GCCGGC	1 cut(s)	125
MspI	CCGG	4 cut(s)	65, 80, 126, 237
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	9 cut(s)	49, 52, 55, 58, 225, 352, 369, 449, 458
NaeI	GCCGGC	1 cut(s)	127
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	2 cut(s)	254, 403
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	3 cut(s)	133, 334, 465
NlaIV	GGNNCC	3 cut(s)	170, 171, 423
PdiI	GCCGGC	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	112, 133
PinAI	ACCGGT	2 cut(s)	64, 236
PkrI	GCNGC	9 cut(s)	18, 45, 48, 51, 54, 57, 60, 230, 354
PleI	GAGTC	2 cut(s)	98, 273
PpsI	GAGTC	2 cut(s)	98, 273
PpuMI	RGGWCCY	1 cut(s)	169
PshAI	GACNNNNGTC	1 cut(s)	237
Psp5II	RGGWCCY	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	3 cut(s)	170, 171, 423
PspPI	GGNCC	2 cut(s)	169, 421
PspPPI	RGGWCCY	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	456
RsaNI	GTAC	1 cut(s)	455
SatI	GCNGC	9 cut(s)	17, 44, 47, 50, 53, 56, 59, 229, 353
Sau3AI	GATC	2 cut(s)	254, 403
Sau96I	GGNCC	2 cut(s)	169, 421
SchI	GAGTC	2 cut(s)	99, 274
ScrFI	CCNGG	1 cut(s)	122
SetI	ASST	5 cut(s)	105, 296, 384, 449, 460
SfaNI	GCATC	2 cut(s)	30, 281
SfcI	CTRYAG	1 cut(s)	190
SinI	GGWCC	2 cut(s)	169, 421
SsiI	CCGC	7 cut(s)	14, 17, 44, 47, 204, 228, 262
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	2 cut(s)	250, 338
TaiI	ACGT	2 cut(s)	105, 296
TaqI	TCGA	1 cut(s)	35
TauI	GCSGC	4 cut(s)	19, 46, 49, 231
TfiI	GAWTC	2 cut(s)	112, 133
TseI	GCWGC	5 cut(s)	49, 52, 55, 58, 352
VpaK11BI	GGWCC	2 cut(s)	169, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.