pycom13g10980

Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012424
Physical Location & Seq
Reverse (-)
7423691 .. 7424787
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g10980.1

Sequence Viewer

Length: 606 bp
ATGTTTGGTGTCTACCTTCTAGAAGATATAAAAGTAATCCCTTTCGATAAAACAGCCCAATGGACATCCTGGTCTCGACACAGCTTTCCCTTGATTCCCTTCTCTTATAAGATCAGCCCGTTCCTATTCCAATCACCAGACCAGACCACTCACAAGATCGCGGGATTTCATCGCGCTCAAAACTCACCTGCAGAAGCAGAGATGTCGAAGGTCGAAGAACCGGCTATGGGAGTTCCAGTATACACGGTACAGAATCCGTACCAAGCCGGAATGATCCCGCCAAACGCTGTCTACGGCGACCCCAAGGGCGTCCCTATCCACCAGACCATTTACAGAGACACTCCCGCTCCCTTCAACTGCGCTTACTGCGGCGATACCGGACTAACCCATGTCAAATCAAAGCCGAGTGTGGCAGCTGTTGTGGCTTGTATGATGCCTATGATGCTTGGATGTTGTTTTCTTCTGCCTTCCTGTGACTGCCTCTGGCATAAGTATCATTACTGCCCAAACTGCCAAGAGAAGGTTGCTGATTTTGAGAAGTCGGACCTTTGTCTTGTTGTGGATCCTCCAAGCTGGACAGAGCGTAGCTATGCACTGCCTGCGTGA

Protein Analysis

202

Amino Acids

22.49

Weight (kDa)

6.13

Isoelectric Point (pI)

57.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-LITAF-like PF10601 113 - 177 2.8e-13 LITAF-like zinc ribbon domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13190 AT5G13190
fragaria_vesca FvH4_4g23080 FvH4_4g23080
malus_domestica MD13G1126300.v1.1 MD16G1126800.v1.1
prunus_persica Prupe.1G219100_v2.0.a1
pyrus_communis pycom13g10980 pycom16g10760
rosa_chinensis RchiOBHm_Chr4g0429351
rosa_multiflora Rmu_sc0003708.1_g000047 Rmu_sc0003904.1_g000002
rosa_roxburghii Rroxscaffold_5G00370960
rosa_rugosa Rorug04G0235200
rosa_samantha Rh4AG291000 Rh4BG296900 Rh4CG312400 Rh4DG293800
rosa_wichuraiana Rw4G025200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 108
AarI CACCTGC 1 cut(s) 196
AasI GACNNNNNNGTC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 196
AccBSI CCGCTC 1 cut(s) 347
AccI GTMKAC 3 cut(s) 12, 240, 291
AccII CGCG 2 cut(s) 161, 174
AciI CCGC 4 cut(s) 161, 278, 345, 369
AclWI GGATC 3 cut(s) 268, 557, 570
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 2 cut(s) 249, 260
AfiI CCNNNNNNNGG 2 cut(s) 227, 520
AgsI TTSAA 1 cut(s) 355
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 4 cut(s) 84, 416, 573, 588
AluI AGCT 4 cut(s) 84, 416, 573, 588
Alw26I GTCTC 2 cut(s) 78, 330
AlwI GGATC 3 cut(s) 268, 557, 570
ApeKI GCWGC 1 cut(s) 413
AspLEI GCGC 2 cut(s) 176, 362
AspS9I GGNCC 1 cut(s) 544
AsuHPI GGTGA 2 cut(s) 126, 177
AvaII GGWCC 1 cut(s) 544
BamHI GGATCC 1 cut(s) 562
BbvI GCAGC 1 cut(s) 425
BceAI ACGGC 1 cut(s) 310
BcgI CGANNNNNNTGC 2 cut(s) 186, 220
BciT130I CCWGG 1 cut(s) 70
BcoDI GTCTC 2 cut(s) 78, 330
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 196
BisI GCNGC 2 cut(s) 370, 414
BlsI GCNGC 2 cut(s) 371, 415
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 544
BmgT120I GGNCC 1 cut(s) 544
BmiI GGNNCC 1 cut(s) 564
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 2 cut(s) 423, 432
BoxI GACNNNNGTC 1 cut(s) 549
BsaHI GRCGYC 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 303
BsaWI WCCGGW 1 cut(s) 377
BsaXI ACNNNNNCTCC 4 cut(s) 222, 252, 331, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 520
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 1 cut(s) 236
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 2 cut(s) 65, 455
BseLI CCNNNNNNNGG 2 cut(s) 227, 520
BseNI ACTGG 1 cut(s) 236
BseXI GCAGC 1 cut(s) 425
Bsh1236I CGCG 2 cut(s) 161, 174
BsiSI CCGG 3 cut(s) 221, 267, 378
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 2 cut(s) 227, 520
BsmAI GTCTC 2 cut(s) 78, 330
BsmFI GGGAC 1 cut(s) 296
Bso31I GGTCTC 1 cut(s) 78
Bsp143I GATC 4 cut(s) 111, 156, 273, 562
BspACI CCGC 4 cut(s) 161, 278, 345, 369
BspFNI CGCG 2 cut(s) 161, 174
BspLI GGNNCC 1 cut(s) 564
BspMAI CTGCAG 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 196
BspPI GGATC 3 cut(s) 268, 557, 570
BspTNI GGTCTC 1 cut(s) 78
BsrBI CCGCTC 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 1 cut(s) 236
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 4 cut(s) 111, 156, 273, 562
BssNAI GTATAC 1 cut(s) 241
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 303
Bst1107I GTATAC 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 247
BstACI GRCGYC 1 cut(s) 309
BstAPI GCANNNNNTGC 1 cut(s) 599
BstC8I GCNNGC 1 cut(s) 600
BstF5I GGATG 2 cut(s) 65, 455
BstFNI CGCG 2 cut(s) 161, 174
BstHHI GCGC 2 cut(s) 176, 362
BstKTI GATC 4 cut(s) 114, 159, 276, 565
BstMAI GTCTC 2 cut(s) 78, 330
BstMBI GATC 4 cut(s) 111, 156, 273, 562
BstMWI GCNNNNNNNGC 5 cut(s) 366, 422, 442, 510, 599
BstNI CCWGG 1 cut(s) 70
BstPAI GACNNNNGTC 1 cut(s) 549
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 189
BstUI CGCG 2 cut(s) 161, 174
BstV1I GCAGC 1 cut(s) 425
BstX2I RGATCY 1 cut(s) 562
BstYI RGATCY 1 cut(s) 562
BstZ17I GTATAC 1 cut(s) 241
BtgZI GCGATG 1 cut(s) 155
BtsCI GGATG 2 cut(s) 65, 455
BtsI GCAGTG 1 cut(s) 593
BtsIMutI CAGTG 1 cut(s) 593
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 600
CfoI GCGC 2 cut(s) 176, 362
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 544
CseI GACGC 1 cut(s) 298
Csp6I GTAC 2 cut(s) 248, 259
CviAII CATG 1 cut(s) 389
CviQI GTAC 2 cut(s) 248, 259
DpnI GATC 4 cut(s) 113, 158, 275, 564
DpnII GATC 4 cut(s) 111, 156, 273, 562
DrdI GACNNNNNNGTC 1 cut(s) 70
DseDI GACNNNNNNGTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 303
Eco31I GGTCTC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 544
EcoRII CCWGG 1 cut(s) 68
EcoT14I CCWWGG 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 1 cut(s) 392
FaiI YATR 9 cut(s) 29, 108, 227, 241, 390, 431, 440, 489, 591
FaqI GGGAC 1 cut(s) 296
FatI CATG 1 cut(s) 388
FauI CCCGC 3 cut(s) 154, 285, 352
FblI GTMKAC 3 cut(s) 12, 240, 291
Fnu4HI GCNGC 2 cut(s) 370, 414
FokI GGATG 2 cut(s) 52, 462
Fsp4HI GCNGC 2 cut(s) 370, 414
FspBI CTAG 1 cut(s) 20
GlaI GCGC 2 cut(s) 175, 361
GluI GCNGC 2 cut(s) 370, 414
HapII CCGG 3 cut(s) 221, 267, 378
HgaI GACGC 1 cut(s) 298
HhaI GCGC 2 cut(s) 176, 362
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 1 cut(s) 392
Hin6I GCGC 2 cut(s) 174, 360
HinP1I GCGC 2 cut(s) 174, 360
HinfI GANTC 2 cut(s) 94, 253
HpaII CCGG 3 cut(s) 221, 267, 378
HphI GGTGA 2 cut(s) 126, 177
Hpy166II GTNNAC 3 cut(s) 13, 241, 292
Hpy188I TCNGA 1 cut(s) 544
Hpy188III TCNNGA 2 cut(s) 20, 75
Hpy8I GTNNAC 3 cut(s) 13, 241, 292
HpyAV CCTTC 6 cut(s) 26, 109, 202, 361, 477, 514
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 2 cut(s) 191, 593
HpyF10VI GCNNNNNNNGC 5 cut(s) 366, 422, 442, 510, 599
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 1 cut(s) 392
HspAI GCGC 2 cut(s) 174, 360
Kzo9I GATC 4 cut(s) 111, 156, 273, 562
LmnI GCTCC 1 cut(s) 352
Lsp1109I GCAGC 1 cut(s) 425
LweI GCATC 2 cut(s) 423, 432
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 473
MalI GATC 4 cut(s) 113, 158, 275, 564
MbiI CCGCTC 1 cut(s) 347
MboI GATC 4 cut(s) 111, 156, 273, 562
MboII GAAGA 3 cut(s) 35, 227, 452
MflI RGATCY 1 cut(s) 562
MmeI TCCRAC 1 cut(s) 522
MnlI CCTC 2 cut(s) 491, 576
MspA1I CMGCKG 1 cut(s) 416
MspI CCGG 3 cut(s) 221, 267, 378
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MvnI CGCG 2 cut(s) 161, 174
MwoI GCNNNNNNNGC 5 cut(s) 366, 422, 442, 510, 599
NdeII GATC 4 cut(s) 111, 156, 273, 562
NlaIII CATG 1 cut(s) 392
NlaIV GGNNCC 1 cut(s) 564
NmeAIII GCCGAG 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 473
PaqCI CACCTGC 1 cut(s) 196
PfeI GAWTC 2 cut(s) 94, 253
PkrI GCNGC 2 cut(s) 371, 415
PshAI GACNNNNGTC 1 cut(s) 549
PsiI TTATAA 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 564
PspPI GGNCC 1 cut(s) 544
PstI CTGCAG 1 cut(s) 193
PsuI RGATCY 1 cut(s) 562
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 2 cut(s) 249, 260
RsaNI GTAC 2 cut(s) 248, 259
SatI GCNGC 2 cut(s) 370, 414
Sau3AI GATC 4 cut(s) 111, 156, 273, 562
Sau96I GGNCC 1 cut(s) 544
ScrFI CCNGG 1 cut(s) 70
SetI ASST 9 cut(s) 18, 86, 190, 213, 418, 525, 549, 575, 590
SfaNI GCATC 2 cut(s) 423, 432
SfcI CTRYAG 1 cut(s) 189
SinI GGWCC 1 cut(s) 544
SsiI CCGC 4 cut(s) 161, 278, 345, 369
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 68
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 4 cut(s) 45, 76, 206, 213
TauI GCSGC 1 cut(s) 372
TfiI GAWTC 2 cut(s) 94, 253
TscAI CASTG 1 cut(s) 600
TseFI GTSAC 1 cut(s) 473
TseI GCWGC 1 cut(s) 413
Tsp45I GTSAC 1 cut(s) 473
TspDTI ATGAA 1 cut(s) 158
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 1 cut(s) 600
VpaK11BI GGWCC 1 cut(s) 544
XbaI TCTAGA 1 cut(s) 19
XmiI GTMKAC 3 cut(s) 12, 240, 291
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.