Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G13190 AT5G13190 |
| fragaria_vesca | FvH4_4g23080 FvH4_4g23080 |
| malus_domestica | MD13G1126300.v1.1 MD16G1126800.v1.1 |
| prunus_persica | Prupe.1G219100_v2.0.a1 |
| pyrus_communis | pycom13g10980 pycom16g10760 |
| rosa_chinensis | RchiOBHm_Chr4g0429351 |
| rosa_multiflora | Rmu_sc0003708.1_g000047 Rmu_sc0003904.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00370960 |
| rosa_rugosa | Rorug04G0235200 |
| rosa_samantha | Rh4AG291000 Rh4BG296900 Rh4CG312400 Rh4DG293800 |
| rosa_wichuraiana | Rw4G025200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 146 |
| AccI | GTMKAC | 2 cut(s) | 39, 90 |
| AciI | CCGC | 4 cut(s) | 56, 77, 144, 359 |
| AclWI | GGATC | 3 cut(s) | 67, 356, 369 |
| AcyI | GRCGYC | 1 cut(s) | 108 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 26, 319 |
| AflIII | ACRYGT | 1 cut(s) | 42 |
| AgeI | ACCGGT | 1 cut(s) | 19 |
| AgsI | TTSAA | 1 cut(s) | 154 |
| AjnI | CCWGG | 1 cut(s) | 60 |
| AluBI | AGCT | 1 cut(s) | 387 |
| AluI | AGCT | 1 cut(s) | 387 |
| Alw21I | GWGCWC | 1 cut(s) | 384 |
| Alw26I | GTCTC | 1 cut(s) | 129 |
| AlwI | GGATC | 3 cut(s) | 67, 356, 369 |
| AoxI | GGCC | 1 cut(s) | 63 |
| AsiGI | ACCGGT | 1 cut(s) | 19 |
| AsuHPI | GGTGA | 2 cut(s) | 34, 175 |
| BamHI | GGATCC | 1 cut(s) | 361 |
| Bbv12I | GWGCWC | 1 cut(s) | 384 |
| BccI | CCATC | 1 cut(s) | 19 |
| BceAI | ACGGC | 2 cut(s) | 71, 109 |
| BciT130I | CCWGG | 1 cut(s) | 62 |
| BcoDI | GTCTC | 1 cut(s) | 129 |
| Bme1390I | CCNGG | 1 cut(s) | 62 |
| BmiI | GGNNCC | 1 cut(s) | 363 |
| BmrFI | CCNGG | 1 cut(s) | 62 |
| BmrI | ACTGGG | 1 cut(s) | 300 |
| BmsI | GCATC | 3 cut(s) | 221, 222, 231 |
| BmuI | ACTGGG | 1 cut(s) | 300 |
| BsaHI | GRCGYC | 1 cut(s) | 108 |
| BsaWI | WCCGGW | 2 cut(s) | 19, 176 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 21, 51, 130, 160 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 26, 319 |
| Bse118I | RCCGGY | 1 cut(s) | 19 |
| Bse1I | ACTGG | 3 cut(s) | 35, 306, 377 |
| BseBI | CCWGG | 1 cut(s) | 62 |
| BseGI | GGATG | 1 cut(s) | 254 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 26, 319 |
| BseNI | ACTGG | 3 cut(s) | 35, 306, 377 |
| BshFI | GGCC | 1 cut(s) | 65 |
| BshTI | ACCGGT | 1 cut(s) | 19 |
| BsiHKAI | GWGCWC | 1 cut(s) | 384 |
| BsiSI | CCGG | 3 cut(s) | 20, 66, 177 |
| BslFI | GGGAC | 2 cut(s) | 95, 288 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 26, 319 |
| BsmAI | GTCTC | 1 cut(s) | 129 |
| BsmFI | GGGAC | 2 cut(s) | 95, 288 |
| BsnI | GGCC | 1 cut(s) | 65 |
| Bsp1286I | GDGCHC | 1 cut(s) | 384 |
| Bsp143I | GATC | 3 cut(s) | 72, 194, 361 |
| BspACI | CCGC | 4 cut(s) | 56, 77, 144, 359 |
| BspANI | GGCC | 1 cut(s) | 65 |
| BspLI | GGNNCC | 1 cut(s) | 363 |
| BspPI | GGATC | 3 cut(s) | 67, 356, 369 |
| BsrBI | CCGCTC | 1 cut(s) | 146 |
| BsrFI | RCCGGY | 1 cut(s) | 19 |
| BsrI | ACTGG | 3 cut(s) | 35, 306, 377 |
| BssAI | RCCGGY | 1 cut(s) | 19 |
| BssMI | GATC | 3 cut(s) | 72, 194, 361 |
| BssNI | GRCGYC | 1 cut(s) | 108 |
| Bst2UI | CCWGG | 1 cut(s) | 62 |
| Bst4CI | ACNGT | 2 cut(s) | 167, 302 |
| BstACI | GRCGYC | 1 cut(s) | 108 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 398 |
| BstC8I | GCNNGC | 1 cut(s) | 399 |
| BstF5I | GGATG | 1 cut(s) | 254 |
| BstKTI | GATC | 3 cut(s) | 75, 197, 364 |
| BstMAI | GTCTC | 1 cut(s) | 129 |
| BstMBI | GATC | 3 cut(s) | 72, 194, 361 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 55, 241, 398 |
| BstNI | CCWGG | 1 cut(s) | 62 |
| BstSCI | CCNGG | 1 cut(s) | 60 |
| BstX2I | RGATCY | 1 cut(s) | 361 |
| BstYI | RGATCY | 1 cut(s) | 361 |
| BsuRI | GGCC | 1 cut(s) | 65 |
| BtsCI | GGATG | 1 cut(s) | 254 |
| BtsI | GCAGTG | 1 cut(s) | 392 |
| BtsIMutI | CAGTG | 2 cut(s) | 370, 392 |
| Cac8I | GCNNGC | 1 cut(s) | 399 |
| Cfr10I | RCCGGY | 1 cut(s) | 19 |
| CseI | GACGC | 1 cut(s) | 97 |
| CspAI | ACCGGT | 1 cut(s) | 19 |
| CviAII | CATG | 1 cut(s) | 402 |
| CviJI | RGCY | 4 cut(s) | 65, 202, 224, 387 |
| CviKI_1 | RGCY | 4 cut(s) | 65, 202, 224, 387 |
| DpnI | GATC | 3 cut(s) | 74, 196, 363 |
| DpnII | GATC | 3 cut(s) | 72, 194, 361 |
| EcoRII | CCWGG | 1 cut(s) | 60 |
| FaeI | CATG | 1 cut(s) | 405 |
| FaiI | YATR | 5 cut(s) | 209, 230, 263, 288, 403 |
| FaqI | GGGAC | 2 cut(s) | 95, 288 |
| FatI | CATG | 1 cut(s) | 401 |
| FauI | CCCGC | 2 cut(s) | 84, 151 |
| FblI | GTMKAC | 2 cut(s) | 39, 90 |
| FokI | GGATG | 1 cut(s) | 261 |
| HaeIII | GGCC | 1 cut(s) | 65 |
| HapII | CCGG | 3 cut(s) | 20, 66, 177 |
| HgaI | GACGC | 1 cut(s) | 97 |
| Hin1I | GRCGYC | 1 cut(s) | 108 |
| Hin1II | CATG | 1 cut(s) | 405 |
| HinfI | GANTC | 2 cut(s) | 52, 180 |
| HpaII | CCGG | 3 cut(s) | 20, 66, 177 |
| HphI | GGTGA | 2 cut(s) | 34, 175 |
| Hpy166II | GTNNAC | 3 cut(s) | 13, 40, 91 |
| Hpy188I | TCNGA | 2 cut(s) | 194, 343 |
| Hpy8I | GTNNAC | 3 cut(s) | 13, 40, 91 |
| HpyAV | CCTTC | 3 cut(s) | 160, 276, 313 |
| HpyCH4III | ACNGT | 2 cut(s) | 167, 302 |
| HpyCH4IV | ACGT | 1 cut(s) | 44 |
| HpyCH4V | TGCA | 4 cut(s) | 49, 351, 392, 401 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 55, 241, 398 |
| HpySE526I | ACGT | 1 cut(s) | 44 |
| Hsp92I | GRCGYC | 1 cut(s) | 108 |
| Hsp92II | CATG | 1 cut(s) | 405 |
| Kzo9I | GATC | 3 cut(s) | 72, 194, 361 |
| LmnI | GCTCC | 1 cut(s) | 151 |
| LweI | GCATC | 3 cut(s) | 221, 222, 231 |
| MaeII | ACGT | 1 cut(s) | 44 |
| MaeIII | GTNAC | 1 cut(s) | 272 |
| MalI | GATC | 3 cut(s) | 74, 196, 363 |
| MbiI | CCGCTC | 1 cut(s) | 146 |
| MboI | GATC | 3 cut(s) | 72, 194, 361 |
| MflI | RGATCY | 1 cut(s) | 361 |
| MhlI | GDGCHC | 1 cut(s) | 384 |
| MlyI | GAGTC | 1 cut(s) | 174 |
| MmeI | TCCRAC | 1 cut(s) | 321 |
| MnlI | CCTC | 3 cut(s) | 123, 290, 375 |
| MspI | CCGG | 3 cut(s) | 20, 66, 177 |
| MspR9I | CCNGG | 1 cut(s) | 62 |
| MvaI | CCWGG | 1 cut(s) | 62 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 55, 241, 398 |
| NdeII | GATC | 3 cut(s) | 72, 194, 361 |
| NlaIII | CATG | 1 cut(s) | 405 |
| NlaIV | GGNNCC | 1 cut(s) | 363 |
| NmeAIII | GCCGAG | 1 cut(s) | 228 |
| NmuCI | GTSAC | 1 cut(s) | 272 |
| PfeI | GAWTC | 1 cut(s) | 52 |
| PinAI | ACCGGT | 1 cut(s) | 19 |
| PleI | GAGTC | 1 cut(s) | 174 |
| PpsI | GAGTC | 1 cut(s) | 174 |
| Psp6I | CCWGG | 1 cut(s) | 60 |
| PspGI | CCWGG | 1 cut(s) | 60 |
| PspN4I | GGNNCC | 1 cut(s) | 363 |
| PsuI | RGATCY | 1 cut(s) | 361 |
| Sau3AI | GATC | 3 cut(s) | 72, 194, 361 |
| SchI | GAGTC | 1 cut(s) | 174 |
| ScrFI | CCNGG | 1 cut(s) | 62 |
| SduI | GDGCHC | 1 cut(s) | 384 |
| SetI | ASST | 5 cut(s) | 12, 47, 128, 324, 389 |
| SfaNI | GCATC | 3 cut(s) | 221, 222, 231 |
| SsiI | CCGC | 4 cut(s) | 56, 77, 144, 359 |
| StyD4I | CCNGG | 1 cut(s) | 60 |
| TaaI | ACNGT | 2 cut(s) | 167, 302 |
| TaiI | ACGT | 1 cut(s) | 47 |
| TaqI | TCGA | 1 cut(s) | 5 |
| TfiI | GAWTC | 1 cut(s) | 52 |
| TscAI | CASTG | 2 cut(s) | 377, 399 |
| TseFI | GTSAC | 1 cut(s) | 272 |
| Tsp45I | GTSAC | 1 cut(s) | 272 |
| TspRI | CASTG | 2 cut(s) | 377, 399 |
| XmiI | GTMKAC | 2 cut(s) | 39, 90 |