AT5G13810

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012042
Physical Location & Seq
Forward (+)
4455148 .. 4457019
1872 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13810.1

Sequence Viewer

Length: 825 bp
ATGGCGGGATTAGAGAAAAACGCTGATTTCTCAGGGAAGACGACGAAATCGGCTACAACGACGTCGTTCTTCAACAGGTCGCTTACAATTCACGGAAGAACAGTGGTGGATTCGGGCCCCAAATCCCACAATCTCAATCCTTCTCTCAATCGTACCACCTCCATTACCAAATTCTACACCCCCGTAGAATCGATGGGAACTTCTCTTAAAGGCAAAGTCAAAAACCTTTGTAGATTATTCGAGACTTCCAAACCCGTTAAACCTGCCTTAGCTGAGATTCCTCAGAAGCAGAAATCCGGTAAATCCCTTTTACCCGAATCGCGGATATCGCCTTTTTCGAGCTTAAACAACTCGGTCATCCGTCTTCCCGGGACAGAGGACAGGATTGTGGTGTATTTTACTAGCTTGAGAGGGATTAGACGGACGTATGAGGATTGCTATGCTGTCAGAATGATATTTAGAGGGTTTCGGGTTTGGATCGATGAGCGCGACGTCTCCATGGATATCGCTTATAGGAAAGAGTTGCAGATTGCAATGGGAGAGAAGTCTGTGTCTTTGCCTCAAGTTTTCATTATGGGCAAGTATGTTGGTGGTGCTGATGTGATCAAGAGTTTGTTTGAGATTGGTGAGCTTGCTAAGATTCTTAAAGAGTTTCCAATGAGACAACCAGGGTTTGTTTGCCATTGCTGTGGGGACATTCGATTTGTTCCGTGTTCCAATTGTAGTGGCAGCAAGAAACTGTTTGATGAGGATGAAGATAGGGTCAAGAGATGTCCTGAATGCAATGAGAATGGATTGATACGTTGTCCTGATTGCTCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

274

Amino Acids

30.66

Weight (kDa)

9.23

Isoelectric Point (pI)

35.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 130 - 196 3.9e-11 Glutaredoxin
GRXCR1-2_C PF23733 227 - 273 7.9e-20 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13810
fragaria_vesca FvH4_3g03100 FvH4_7g02860
malus_domestica MD02G1289200.v1.1 MD07G1038000.v1.1
prunus_persica Prupe.2G033200_v2.0.a1
pyrus_communis pycom07g02630
rosa_chinensis RchiOBHm_Chr1g0323791
rosa_laevigata RLG00000030296
rosa_multiflora Rmu_co8205106.1_g000001 Rmu_sc0000252.1_g000031 Rmu_sc0002634.1_g000015
rosa_roxburghii Rroxscaffold_4G00326410
rosa_rugosa Rorug01G0039600
rosa_samantha Rh1AG056800 Rh1BG047800 Rh1CG058100 Rh1DG061900
rosa_wichuraiana Rw1G004840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 65, 495
Acc36I ACCTGC 1 cut(s) 271
AccII CGCG 2 cut(s) 322, 489
AciI CCGC 2 cut(s) 5, 322
AclWI GGATC 1 cut(s) 485
AcsI RAATTY 1 cut(s) 170
AcyI GRCGYC 2 cut(s) 62, 492
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 321
AgsI TTSAA 1 cut(s) 73
AjnI CCWGG 1 cut(s) 667
AluBI AGCT 4 cut(s) 272, 342, 405, 631
AluI AGCT 4 cut(s) 272, 342, 405, 631
Alw26I GTCTC 3 cut(s) 236, 499, 655
AlwI GGATC 1 cut(s) 485
Ama87I CYCGRG 1 cut(s) 368
AoxI GGCC 1 cut(s) 115
ApaI GGGCCC 1 cut(s) 119
ApeKI GCWGC 1 cut(s) 729
ApoI RAATTY 1 cut(s) 170
ArsI GACNNNNNNTTYG 2 cut(s) 686, 718
AspLEI GCGC 1 cut(s) 489
AspS9I GGNCC 2 cut(s) 115, 116
AsuC2I CCSGG 2 cut(s) 369, 370
AsuHPI GGTGA 1 cut(s) 638
AvaI CYCGRG 1 cut(s) 368
BaeGI GKGCMC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 119
BbsI GAAGAC 2 cut(s) 44, 356
BbvI GCAGC 1 cut(s) 741
BccI CCATC 1 cut(s) 187
BciT130I CCWGG 1 cut(s) 669
BclI TGATCA 1 cut(s) 603
BcnI CCSGG 2 cut(s) 369, 370
BcoDI GTCTC 3 cut(s) 236, 499, 655
BfaI CTAG 1 cut(s) 402
BfuAI ACCTGC 1 cut(s) 271
BisI GCNGC 1 cut(s) 730
BlsI GCNGC 1 cut(s) 731
Bme1390I CCNGG 3 cut(s) 369, 370, 669
BmeT110I CYCGRG 1 cut(s) 368
BmgT120I GGNCC 2 cut(s) 115, 116
BmiI GGNNCC 2 cut(s) 117, 118
BmrFI CCNGG 3 cut(s) 369, 370, 669
BpiI GAAGAC 2 cut(s) 44, 356
Bpu10I CCTNAGC 1 cut(s) 268
BpuEI CTTGAG 2 cut(s) 427, 546
BpuMI CCSGG 2 cut(s) 369, 370
Bsa29I ATCGAT 2 cut(s) 191, 480
BsaHI GRCGYC 2 cut(s) 62, 492
BsaJI CCNNGG 3 cut(s) 368, 498, 668
BsaWI WCCGGW 1 cut(s) 296
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse3DI GCAATG 3 cut(s) 540, 682, 790
BseBI CCWGG 1 cut(s) 669
BseCI ATCGAT 2 cut(s) 191, 480
BseDI CCNNGG 3 cut(s) 368, 498, 668
BseGI GGATG 2 cut(s) 357, 757
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMI GCAATG 3 cut(s) 540, 682, 790
BseMII CTCAG 3 cut(s) 45, 264, 296
BseSI GKGCMC 1 cut(s) 119
BseXI GCAGC 1 cut(s) 741
Bsh1236I CGCG 2 cut(s) 322, 489
BshFI GGCC 1 cut(s) 117
BshVI ATCGAT 2 cut(s) 191, 480
BsiHKCI CYCGRG 1 cut(s) 368
BsiSI CCGG 2 cut(s) 297, 369
BslFI GGGAC 2 cut(s) 385, 707
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 3 cut(s) 236, 499, 655
BsmBI CGTCTC 1 cut(s) 499
BsmFI GGGAC 2 cut(s) 385, 707
BsmI GAATGC 1 cut(s) 785
BsnI GGCC 1 cut(s) 117
BsoBI CYCGRG 1 cut(s) 368
Bsp120I GGGCCC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 2 cut(s) 477, 603
Bsp19I CCATGG 1 cut(s) 498
BspACI CCGC 2 cut(s) 5, 322
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 3 cut(s) 44, 265, 295
BspDI ATCGAT 2 cut(s) 191, 480
BspFNI CGCG 2 cut(s) 322, 489
BspLI GGNNCC 2 cut(s) 117, 118
BspMI ACCTGC 1 cut(s) 271
BspPI GGATC 1 cut(s) 485
BsrDI GCAATG 3 cut(s) 540, 682, 790
BssECI CCNNGG 3 cut(s) 368, 498, 668
BssMI GATC 2 cut(s) 477, 603
BssNI GRCGYC 2 cut(s) 62, 492
BssT1I CCWWGG 1 cut(s) 498
Bst2UI CCWGG 1 cut(s) 669
Bst4CI ACNGT 2 cut(s) 103, 741
BstACI GRCGYC 2 cut(s) 62, 492
BstC8I GCNNGC 1 cut(s) 633
BstDEI CTNAG 5 cut(s) 31, 268, 273, 282, 636
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 2 cut(s) 357, 757
BstFNI CGCG 2 cut(s) 322, 489
BstHHI GCGC 1 cut(s) 489
BstKTI GATC 2 cut(s) 480, 606
BstMAI GTCTC 3 cut(s) 236, 499, 655
BstMBI GATC 2 cut(s) 477, 603
BstMWI GCNNNNNNNGC 1 cut(s) 328
BstNI CCWGG 1 cut(s) 669
BstSCI CCNGG 3 cut(s) 367, 368, 667
BstSLI GKGCMC 1 cut(s) 119
BstUI CGCG 2 cut(s) 322, 489
BstV1I GCAGC 1 cut(s) 741
BstV2I GAAGAC 2 cut(s) 44, 356
BstXI CCANNNNNNTGG 1 cut(s) 689
Bsu15I ATCGAT 2 cut(s) 191, 480
BsuRI GGCC 1 cut(s) 117
BsuTUI ATCGAT 2 cut(s) 191, 480
BtgI CCRYGG 1 cut(s) 498
BtsCI GGATG 2 cut(s) 357, 757
BtsIMutI CAGTG 1 cut(s) 108
BveI ACCTGC 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 633
CfoI GCGC 1 cut(s) 489
Cfr13I GGNCC 2 cut(s) 115, 116
Cfr9I CCCGGG 1 cut(s) 368
ClaI ATCGAT 2 cut(s) 191, 480
Csp6I GTAC 1 cut(s) 153
CspCI CAANNNNNGTGG 2 cut(s) 706, 741
CviAII CATG 1 cut(s) 499
CviJI RGCY 6 cut(s) 53, 117, 272, 342, 405, 631
CviKI_1 RGCY 6 cut(s) 53, 117, 272, 342, 405, 631
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 5 cut(s) 31, 268, 273, 282, 636
DpnI GATC 2 cut(s) 479, 605
DpnII GATC 2 cut(s) 477, 603
Eco130I CCWWGG 1 cut(s) 498
Eco24I GRGCYC 1 cut(s) 119
Eco32I GATATC 2 cut(s) 327, 505
Eco88I CYCGRG 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 667
EcoRV GATATC 2 cut(s) 327, 505
EcoT14I CCWWGG 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 498
Esp3I CGTCTC 1 cut(s) 499
FaeI CATG 1 cut(s) 502
FaiI YATR 6 cut(s) 429, 441, 500, 513, 575, 585
FaqI GGGAC 2 cut(s) 385, 707
FatI CATG 1 cut(s) 498
FbaI TGATCA 1 cut(s) 603
Fnu4HI GCNGC 1 cut(s) 730
FokI GGATG 2 cut(s) 344, 764
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 730
FspBI CTAG 1 cut(s) 402
GlaI GCGC 1 cut(s) 488
GluI GCNGC 1 cut(s) 730
HaeIII GGCC 1 cut(s) 117
HapII CCGG 2 cut(s) 297, 369
HhaI GCGC 1 cut(s) 489
Hin1I GRCGYC 2 cut(s) 62, 492
Hin1II CATG 1 cut(s) 502
Hin6I GCGC 1 cut(s) 487
HinP1I GCGC 1 cut(s) 487
HinfI GANTC 5 cut(s) 110, 188, 277, 317, 640
HpaII CCGG 2 cut(s) 297, 369
HphI GGTGA 1 cut(s) 638
Hpy188I TCNGA 2 cut(s) 285, 449
Hpy188III TCNNGA 6 cut(s) 241, 607, 766, 776, 809, 822
Hpy99I CGWCG 4 cut(s) 46, 64, 67, 494
HpyAV CCTTC 1 cut(s) 150
HpyCH4III ACNGT 2 cut(s) 103, 741
HpyCH4IV ACGT 4 cut(s) 62, 425, 492, 802
HpyCH4V TGCA 3 cut(s) 526, 533, 783
HpyF10VI GCNNNNNNNGC 1 cut(s) 328
HpyF3I CTNAG 5 cut(s) 31, 268, 273, 282, 636
HpySE526I ACGT 4 cut(s) 62, 425, 492, 802
Hsp92I GRCGYC 2 cut(s) 62, 492
Hsp92II CATG 1 cut(s) 502
HspAI GCGC 1 cut(s) 487
Ksp22I TGATCA 1 cut(s) 603
Kzo9I GATC 2 cut(s) 477, 603
LpnPI CCDG 9 cut(s) 18, 61, 276, 310, 367, 382, 654, 681, 789
Lsp1109I GCAGC 1 cut(s) 741
MaeI CTAG 1 cut(s) 402
MaeII ACGT 4 cut(s) 62, 425, 492, 802
MalI GATC 2 cut(s) 479, 605
MboI GATC 2 cut(s) 477, 603
MboII GAAGA 6 cut(s) 49, 61, 108, 356, 767, 810
MfeI CAATTG 1 cut(s) 718
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 3 cut(s) 87, 170, 718
MnlI CCTC 8 cut(s) 169, 291, 370, 404, 424, 455, 570, 742
MseI TTAA 4 cut(s) 207, 258, 344, 645
MslI CAYNNNNRTG 1 cut(s) 687
MspI CCGG 2 cut(s) 297, 369
MspR9I CCNGG 3 cut(s) 369, 370, 669
MunI CAATTG 1 cut(s) 718
Mva1269I GAATGC 1 cut(s) 785
MvaI CCWGG 1 cut(s) 669
MvnI CGCG 2 cut(s) 322, 489
MwoI GCNNNNNNNGC 1 cut(s) 328
NciI CCSGG 2 cut(s) 369, 370
NcoI CCATGG 1 cut(s) 498
NdeII GATC 2 cut(s) 477, 603
NlaIII CATG 1 cut(s) 502
NlaIV GGNNCC 2 cut(s) 117, 118
PcsI WCGNNNNNNNCGW 3 cut(s) 56, 335, 486
PctI GAATGC 1 cut(s) 785
PfeI GAWTC 5 cut(s) 110, 188, 277, 317, 640
PkrI GCNGC 1 cut(s) 731
Psp6I CCWGG 1 cut(s) 667
PspGI CCWGG 1 cut(s) 667
PspN4I GGNNCC 2 cut(s) 117, 118
PspOMI GGGCCC 1 cut(s) 115
PspPI GGNCC 2 cut(s) 115, 116
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 687
SaqAI TTAA 4 cut(s) 207, 258, 344, 645
SatI GCNGC 1 cut(s) 730
Sau3AI GATC 2 cut(s) 477, 603
Sau96I GGNCC 2 cut(s) 115, 116
ScrFI CCNGG 3 cut(s) 369, 370, 669
SduI GDGCHC 1 cut(s) 119
SmaI CCCGGG 1 cut(s) 370
SmiMI CAYNNNNRTG 1 cut(s) 687
SmlI CTYRAG 2 cut(s) 406, 561
SmoI CTYRAG 2 cut(s) 406, 561
Sse9I AATT 3 cut(s) 87, 170, 718
SsiI CCGC 2 cut(s) 5, 322
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 3 cut(s) 367, 368, 667
StyI CCWWGG 1 cut(s) 498
TaaI ACNGT 2 cut(s) 103, 741
TaiI ACGT 4 cut(s) 65, 428, 495, 805
TaqI TCGA 5 cut(s) 191, 240, 338, 480, 700
TaqII GACCGA 1 cut(s) 343
TasI AATT 3 cut(s) 87, 170, 718
TfiI GAWTC 5 cut(s) 110, 188, 277, 317, 640
Tru1I TTAA 4 cut(s) 207, 258, 344, 645
Tru9I TTAA 4 cut(s) 207, 258, 344, 645
TscAI CASTG 1 cut(s) 108
TseI GCWGC 1 cut(s) 729
TspDTI ATGAA 2 cut(s) 559, 768
TspGWI ACGGA 4 cut(s) 108, 350, 436, 699
TspMI CCCGGG 1 cut(s) 368
TspRI CASTG 1 cut(s) 108
XapI RAATTY 1 cut(s) 170
XmaI CCCGGG 1 cut(s) 368
XspI CTAG 1 cut(s) 402
ZraI GACGTC 2 cut(s) 63, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.