FvH4_7g02860

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012042
Physical Location & Seq
Reverse (-)
3176910 .. 3177716
807 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g02860.t1

Sequence Viewer

Length: 807 bp
ATGGCGGATTTCGAAAACAGGCTCGATTTGTCTTCCCCGAAGCCGTCCTTGTTCTTCAATCGCTCTATAACCATGTACGCAGAGCCGAAGAAGGCCCACCACGCGCTCGACCACGCCGGCTCCTTCAAGAAACTCTACAGCTCCATGGAGACCATGCGTTCCGCCAGCAGCTCTTTTAAAGGAAAGGTGAAGAAACTTTGCAGCTTTTTCGAAACGGACAAGCTTCCGCCGCCTCGAAACGTTTCGGAGGAGACAACTCAATCGCTTGGGAAGCAGCTCAGGCCGTCGAAATCGATGGTGCATGCAAAGTCTCTGGGGCCGGATTTTCGGGTGTTGTCGATTAGGCTGCCGGGGACGGATGACAGGATTGTAATGTACCTCACTAGCTTGCGTGGGGTTCGCAGGACTTATGAGGATTGTTATGCTGTGAAGAATATATTCCGAGGGTTTGGGGTTTGGGTCGATGAAAGGGATATTTCCATGGATTCGGCTTATAGGAAAGAGTTGCAGAGCGTTTTGGGTGCCAAGAATGTGAGTTTGCCTCAGATTTTTATAAAGGGGAAATATGTGGGAGGTGCCGAGGTGATCAAGCAGCTGTTTGAGACCGGAGAGTTGGCAAAGATATTGCAAGGGCTTCCCATTCGGAAACCTGGGTCTGTGTGTGGGGGTTGTGGGGATGCCAGGTTTGTGCCGTGCATGAATTGCAGCGGGAGCAGGAAGGTGTTTGATGAGGATGATGACACGCCCAAGAGATGCTCCGAGTGCAATGAGAATGGTTTGATTCGGTGTCCTAATTGCTGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

269

Amino Acids

29.94

Weight (kDa)

9.1

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 125 - 190 1.9e-13 Glutaredoxin
GRXCR1-2_C PF23733 221 - 267 2.4e-19 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13810
fragaria_vesca FvH4_3g03100 FvH4_7g02860
malus_domestica MD02G1289200.v1.1 MD07G1038000.v1.1
prunus_persica Prupe.2G033200_v2.0.a1
pyrus_communis pycom07g02630
rosa_chinensis RchiOBHm_Chr1g0323791
rosa_laevigata RLG00000030296
rosa_multiflora Rmu_co8205106.1_g000001 Rmu_sc0000252.1_g000031 Rmu_sc0002634.1_g000015
rosa_roxburghii Rroxscaffold_4G00326410
rosa_rugosa Rorug01G0039600
rosa_samantha Rh1AG056800 Rh1BG047800 Rh1CG058100 Rh1DG061900
rosa_wichuraiana Rw1G004840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 554
AccB1I GGYRCC 2 cut(s) 521, 575
AccII CGCG 1 cut(s) 104
AciI CCGC 5 cut(s) 5, 162, 227, 230, 708
AclI AACGTT 1 cut(s) 240
AfaI GTAC 2 cut(s) 77, 377
AgsI TTSAA 2 cut(s) 58, 127
AjnI CCWGG 2 cut(s) 649, 680
AluBI AGCT 7 cut(s) 141, 171, 204, 223, 277, 387, 595
AluI AGCT 7 cut(s) 141, 171, 204, 223, 277, 387, 595
Alw26I GTCTC 4 cut(s) 143, 245, 315, 596
AoxI GGCC 3 cut(s) 93, 281, 317
ApeKI GCWGC 6 cut(s) 168, 201, 274, 346, 592, 705
Asp700I GAANNNNTTC 2 cut(s) 241, 437
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 2 cut(s) 94, 317
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 2 cut(s) 199, 595
AsuII TTCGAA 2 cut(s) 12, 210
BanI GGYRCC 2 cut(s) 521, 575
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 6 cut(s) 180, 213, 286, 333, 604, 717
BccI CCATC 1 cut(s) 289
BceAI ACGGC 3 cut(s) 28, 268, 676
BcgI CGANNNNNNTGC 4 cut(s) 190, 224, 328, 362
BciT130I CCWGG 2 cut(s) 651, 682
BclI TGATCA 1 cut(s) 585
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 4 cut(s) 143, 245, 315, 596
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 136
BisI GCNGC 7 cut(s) 169, 202, 230, 275, 347, 593, 706
BlsI GCNGC 7 cut(s) 170, 203, 231, 276, 348, 594, 707
Bme1390I CCNGG 3 cut(s) 351, 651, 682
BmgT120I GGNCC 2 cut(s) 94, 317
BmiI GGNNCC 4 cut(s) 121, 318, 523, 577
BmrFI CCNGG 3 cut(s) 351, 651, 682
BmsI GCATC 2 cut(s) 667, 743
BpiI GAAGAC 1 cut(s) 24
BplI GAGNNNNNCTC 2 cut(s) 526, 558
Bpu10I CCTNAGC 1 cut(s) 278
Bpu14I TTCGAA 2 cut(s) 12, 210
BpuMI CCSGG 1 cut(s) 351
Bsa29I ATCGAT 1 cut(s) 293
BsaI GGTCTC 2 cut(s) 143, 596
BsaJI CCNNGG 6 cut(s) 144, 350, 442, 480, 579, 650
BsaWI WCCGGW 1 cut(s) 605
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bse118I RCCGGY 1 cut(s) 116
Bse3DI GCAATG 1 cut(s) 772
BseBI CCWGG 2 cut(s) 651, 682
BseCI ATCGAT 1 cut(s) 293
BseDI CCNNGG 6 cut(s) 144, 350, 442, 480, 579, 650
BseGI GGATG 3 cut(s) 364, 682, 739
BseMI GCAATG 1 cut(s) 772
BseMII CTCAG 2 cut(s) 292, 557
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 6 cut(s) 180, 213, 286, 333, 604, 717
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 3 cut(s) 95, 283, 319
BshNI GGYRCC 2 cut(s) 521, 575
BshVI ATCGAT 1 cut(s) 293
BsiSI CCGG 4 cut(s) 117, 320, 350, 606
BslFI GGGAC 1 cut(s) 367
BsmAI GTCTC 4 cut(s) 143, 245, 315, 596
BsmFI GGGAC 1 cut(s) 367
BsnI GGCC 3 cut(s) 95, 283, 319
Bso31I GGTCTC 2 cut(s) 143, 596
Bsp119I TTCGAA 2 cut(s) 12, 210
Bsp143I GATC 1 cut(s) 585
Bsp19I CCATGG 2 cut(s) 144, 480
BspACI CCGC 5 cut(s) 5, 162, 227, 230, 708
BspANI GGCC 3 cut(s) 95, 283, 319
BspCNI CTCAG 2 cut(s) 291, 556
BspDI ATCGAT 1 cut(s) 293
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 4 cut(s) 121, 318, 523, 577
BspT104I TTCGAA 2 cut(s) 12, 210
BspT107I GGYRCC 2 cut(s) 521, 575
BspTNI GGTCTC 2 cut(s) 143, 596
BsrDI GCAATG 1 cut(s) 772
BsrFI RCCGGY 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 6 cut(s) 144, 350, 442, 480, 579, 650
BssMI GATC 1 cut(s) 585
BssT1I CCWWGG 2 cut(s) 144, 480
Bst2UI CCWGG 2 cut(s) 651, 682
BstAPI GCANNNNNTGC 1 cut(s) 702
BstBI TTCGAA 2 cut(s) 12, 210
BstC8I GCNNGC 4 cut(s) 118, 166, 303, 389
BstDEI CTNAG 2 cut(s) 278, 543
BstDSI CCRYGG 2 cut(s) 144, 480
BstF5I GGATG 3 cut(s) 364, 682, 739
BstFNI CGCG 1 cut(s) 104
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 1 cut(s) 588
BstMAI GTCTC 4 cut(s) 143, 245, 315, 596
BstMBI GATC 1 cut(s) 585
BstMWI GCNNNNNNNGC 7 cut(s) 101, 229, 271, 280, 702, 711, 762
BstNI CCWGG 2 cut(s) 651, 682
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 3 cut(s) 349, 649, 680
BstSFI CTRYAG 1 cut(s) 136
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 6 cut(s) 180, 213, 286, 333, 604, 717
BstV2I GAAGAC 1 cut(s) 24
Bsu15I ATCGAT 1 cut(s) 293
BsuRI GGCC 3 cut(s) 95, 283, 319
BsuTUI ATCGAT 1 cut(s) 293
BtgI CCRYGG 2 cut(s) 144, 480
BtsCI GGATG 3 cut(s) 364, 682, 739
Cac8I GCNNGC 4 cut(s) 118, 166, 303, 389
CfoI GCGC 1 cut(s) 106
Cfr10I RCCGGY 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 94, 317
ClaI ATCGAT 1 cut(s) 293
Csp6I GTAC 2 cut(s) 76, 376
CviAII CATG 6 cut(s) 73, 145, 154, 302, 481, 697
CviQI GTAC 2 cut(s) 76, 376
DdeI CTNAG 2 cut(s) 278, 543
DpnI GATC 1 cut(s) 587
DpnII GATC 1 cut(s) 585
DraI TTTAAA 1 cut(s) 178
EciI GGCGGA 3 cut(s) 20, 151, 216
Eco130I CCWWGG 2 cut(s) 144, 480
Eco31I GGTCTC 2 cut(s) 143, 596
EcoRII CCWGG 2 cut(s) 649, 680
EcoT14I CCWWGG 2 cut(s) 144, 480
ErhI CCWWGG 2 cut(s) 144, 480
FaeI CATG 6 cut(s) 76, 148, 157, 305, 484, 700
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FaqI GGGAC 1 cut(s) 367
FatI CATG 6 cut(s) 72, 144, 153, 301, 480, 696
FauI CCCGC 1 cut(s) 701
FbaI TGATCA 1 cut(s) 585
Fnu4HI GCNGC 7 cut(s) 169, 202, 230, 275, 347, 593, 706
FokI GGATG 3 cut(s) 371, 689, 746
Fsp4HI GCNGC 7 cut(s) 169, 202, 230, 275, 347, 593, 706
FspBI CTAG 1 cut(s) 384
GlaI GCGC 1 cut(s) 105
GluI GCNGC 7 cut(s) 169, 202, 230, 275, 347, 593, 706
HaeIII GGCC 3 cut(s) 95, 283, 319
HapII CCGG 4 cut(s) 117, 320, 350, 606
HhaI GCGC 1 cut(s) 106
Hin1II CATG 6 cut(s) 76, 148, 157, 305, 484, 700
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 2 cut(s) 485, 781
HpaII CCGG 4 cut(s) 117, 320, 350, 606
HphI GGTGA 2 cut(s) 199, 595
Hpy188I TCNGA 5 cut(s) 247, 443, 546, 645, 760
Hpy188III TCNNGA 1 cut(s) 127
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 3 cut(s) 85, 133, 712
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 8 cut(s) 201, 301, 305, 508, 628, 696, 705, 765
HpyF10VI GCNNNNNNNGC 7 cut(s) 101, 229, 271, 280, 702, 711, 762
HpyF3I CTNAG 2 cut(s) 278, 543
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 6 cut(s) 76, 148, 157, 305, 484, 700
HspAI GCGC 1 cut(s) 104
KroI GCCGGC 1 cut(s) 116
KroNI GCCGGC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 585
Kzo9I GATC 1 cut(s) 585
LmnI GCTCC 4 cut(s) 125, 146, 711, 761
Lsp1109I GCAGC 6 cut(s) 180, 213, 286, 333, 604, 717
LweI GCATC 2 cut(s) 667, 743
MaeI CTAG 1 cut(s) 384
MaeII ACGT 1 cut(s) 240
MalI GATC 1 cut(s) 587
MboI GATC 1 cut(s) 585
MboII GAAGA 5 cut(s) 24, 46, 100, 202, 442
MluCI AATT 2 cut(s) 700, 793
MnlI CCTC 9 cut(s) 241, 243, 389, 406, 437, 552, 566, 574, 724
MroNI GCCGGC 1 cut(s) 116
MroXI GAANNNNTTC 2 cut(s) 241, 437
MseI TTAA 2 cut(s) 177, 805
MspA1I CMGCKG 2 cut(s) 595, 708
MspI CCGG 4 cut(s) 117, 320, 350, 606
MspR9I CCNGG 3 cut(s) 351, 651, 682
MvaI CCWGG 2 cut(s) 651, 682
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 7 cut(s) 101, 229, 271, 280, 702, 711, 762
NaeI GCCGGC 1 cut(s) 118
NciI CCSGG 1 cut(s) 351
NcoI CCATGG 2 cut(s) 144, 480
NdeII GATC 1 cut(s) 585
NgoMIV GCCGGC 1 cut(s) 116
NlaIII CATG 6 cut(s) 76, 148, 157, 305, 484, 700
NlaIV GGNNCC 4 cut(s) 121, 318, 523, 577
NmeAIII GCCGAG 1 cut(s) 604
NspI RCATGY 1 cut(s) 305
NspV TTCGAA 2 cut(s) 12, 210
PaeI GCATGC 1 cut(s) 305
PdiI GCCGGC 1 cut(s) 118
PdmI GAANNNNTTC 2 cut(s) 241, 437
PfeI GAWTC 2 cut(s) 485, 781
PkrI GCNGC 7 cut(s) 170, 203, 231, 276, 348, 594, 707
PsiI TTATAA 1 cut(s) 554
Psp1406I AACGTT 1 cut(s) 240
Psp6I CCWGG 2 cut(s) 649, 680
PspGI CCWGG 2 cut(s) 649, 680
PspN4I GGNNCC 4 cut(s) 121, 318, 523, 577
PspPI GGNCC 2 cut(s) 94, 317
PvuII CAGCTG 1 cut(s) 595
RsaI GTAC 2 cut(s) 77, 377
RsaNI GTAC 2 cut(s) 76, 376
SaqAI TTAA 2 cut(s) 177, 805
SatI GCNGC 7 cut(s) 169, 202, 230, 275, 347, 593, 706
Sau3AI GATC 1 cut(s) 585
Sau96I GGNCC 2 cut(s) 94, 317
ScrFI CCNGG 3 cut(s) 351, 651, 682
SfaNI GCATC 2 cut(s) 667, 743
SfcI CTRYAG 1 cut(s) 136
SfuI TTCGAA 2 cut(s) 12, 210
SphI GCATGC 1 cut(s) 305
Sse9I AATT 2 cut(s) 700, 793
SsiI CCGC 5 cut(s) 5, 162, 227, 230, 708
SspMI CTAG 1 cut(s) 384
StyD4I CCNGG 3 cut(s) 349, 649, 680
StyI CCWWGG 2 cut(s) 144, 480
TaiI ACGT 1 cut(s) 243
TaqI TCGA 9 cut(s) 12, 24, 108, 210, 235, 287, 293, 338, 462
TasI AATT 2 cut(s) 700, 793
TauI GCSGC 1 cut(s) 232
TfiI GAWTC 2 cut(s) 485, 781
Tru1I TTAA 2 cut(s) 177, 805
Tru9I TTAA 2 cut(s) 177, 805
TseI GCWGC 6 cut(s) 168, 201, 274, 346, 592, 705
TspDTI ATGAA 2 cut(s) 480, 713
TspGWI ACGGA 2 cut(s) 230, 371
XceI RCATGY 1 cut(s) 305
XmnI GAANNNNTTC 2 cut(s) 241, 437
XspI CTAG 1 cut(s) 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.