Rmu_co8205106.1_g000001

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8205106.1
OG0012042
Physical Location & Seq
Forward (+)
1 .. 717
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8205106.1_g000001.1.cds

Sequence Viewer

Length: 651 bp
ggttgatttgtcgtcgaaggccaagtccaagacctcctccccaaaccggggattgttcttcaatcggtctatgaccatgtacgccgagcccaagaaggcccaacacgcgctcgatcacgcagggtcgttcaagaaattctacaattccatggaaacggtgcgttccgcgagcagttcttttaaagggaaggtgaagaagctctgcagcttcttcgaaaccgacaagctccccacacgaaacgtttcggacgaatcgcagtccctggtgaagctcaggccgtcgaaatcgatggccaattcgaagtctctggcgccggattttcgggtgttgtcgattaggctgccgggtacggatgacaggattgtaatgtacctcaccagcttgcgcgggattcgaaggacgtatgaggattgttatgctgtgaagatgatattcagagggtttggggtttgggttgatgagagggatatttcgatggattcggattataggaaagagttgcagagcgttttgggagccaagaatgtgagcttgccgcaggtttttataagggggaaatatgtgggaggtgctgaggtgatcaagcagctgtttgagacgggagaattggcaaagatattgcaagggcttcccattcggaaacccgggtc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

217

Amino Acids

24.4

Weight (kDa)

9.92

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13810
fragaria_vesca FvH4_3g03100 FvH4_7g02860
malus_domestica MD02G1289200.v1.1 MD07G1038000.v1.1
prunus_persica Prupe.2G033200_v2.0.a1
pyrus_communis pycom07g02630
rosa_chinensis RchiOBHm_Chr1g0323791
rosa_laevigata RLG00000030296
rosa_multiflora Rmu_co8205106.1_g000001 Rmu_sc0000252.1_g000031 Rmu_sc0002634.1_g000015
rosa_roxburghii Rroxscaffold_4G00326410
rosa_rugosa Rorug01G0039600
rosa_samantha Rh1AG056800 Rh1BG047800 Rh1CG058100 Rh1DG061900
rosa_wichuraiana Rw1G004840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 549
Acc36I ACCTGC 1 cut(s) 530
AccB1I GGYRCC 1 cut(s) 311
AccII CGCG 3 cut(s) 108, 168, 388
AciI CCGC 3 cut(s) 166, 388, 537
AclI AACGTT 1 cut(s) 241
AcoI YGGCCR 1 cut(s) 292
AcsI RAATTY 1 cut(s) 135
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 3 cut(s) 81, 350, 372
AfiI CCNNNNNNNGG 3 cut(s) 46, 47, 48
AgsI TTSAA 2 cut(s) 62, 131
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 7 cut(s) 200, 208, 227, 272, 382, 532, 590
AluI AGCT 7 cut(s) 200, 208, 227, 272, 382, 532, 590
Alw26I GTCTC 2 cut(s) 310, 591
AlwNI CAGNNNCTG 1 cut(s) 263
Ama87I CYCGRG 1 cut(s) 645
AoxI GGCC 4 cut(s) 19, 97, 276, 292
ApeKI GCWGC 3 cut(s) 205, 341, 587
ApoI RAATTY 1 cut(s) 135
ArsI GACNNNNNNTTYG 2 cut(s) 9, 41
Asp700I GAANNNNTTC 1 cut(s) 242
AspLEI GCGC 3 cut(s) 110, 314, 388
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 4 cut(s) 48, 346, 646, 647
AsuHPI GGTGA 4 cut(s) 203, 278, 368, 590
AsuII TTCGAA 3 cut(s) 214, 300, 395
AvaI CYCGRG 1 cut(s) 645
BalI TGGCCA 1 cut(s) 294
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 91
BbvCI CCTCAGC 1 cut(s) 574
BbvI GCAGC 3 cut(s) 217, 328, 599
BccI CCATC 2 cut(s) 284, 470
BceAI ACGGC 1 cut(s) 263
BcgI CGANNNNNNTGC 4 cut(s) 194, 228, 323, 357
BciT130I CCWGG 1 cut(s) 264
BclI TGATCA 1 cut(s) 580
BcnI CCSGG 4 cut(s) 48, 346, 646, 647
BcoDI GTCTC 2 cut(s) 310, 591
BfmI CTRYAG 1 cut(s) 203
BfoI RGCGCY 1 cut(s) 315
BfuAI ACCTGC 1 cut(s) 530
BisI GCNGC 4 cut(s) 206, 342, 537, 588
BlsI GCNGC 4 cut(s) 207, 343, 538, 589
Bme1390I CCNGG 5 cut(s) 48, 264, 346, 646, 647
BmeT110I CYCGRG 1 cut(s) 645
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 313, 518
BmrFI CCNGG 5 cut(s) 48, 264, 346, 646, 647
Bpu10I CCTNAGC 2 cut(s) 273, 574
Bpu14I TTCGAA 3 cut(s) 214, 300, 395
BpuMI CCSGG 4 cut(s) 48, 346, 646, 647
Bsa29I ATCGAT 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 4 cut(s) 47, 148, 262, 645
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 47, 48
BseBI CCWGG 1 cut(s) 264
BseCI ATCGAT 1 cut(s) 288
BseDI CCNNGG 4 cut(s) 47, 148, 262, 645
BseGI GGATG 1 cut(s) 359
BseLI CCNNNNNNNGG 3 cut(s) 46, 47, 48
BseMII CTCAG 2 cut(s) 287, 565
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 3 cut(s) 217, 328, 599
Bsh1236I CGCG 3 cut(s) 108, 168, 388
BshFI GGCC 4 cut(s) 21, 99, 278, 294
BshNI GGYRCC 1 cut(s) 311
BshVI ATCGAT 1 cut(s) 288
BsiHKCI CYCGRG 1 cut(s) 645
BsiSI CCGG 4 cut(s) 47, 315, 345, 646
BslFI GGGAC 1 cut(s) 245
BslI CCNNNNNNNGG 3 cut(s) 46, 47, 48
BsmAI GTCTC 2 cut(s) 310, 591
BsmBI CGTCTC 1 cut(s) 591
BsmFI GGGAC 1 cut(s) 245
BsnI GGCC 4 cut(s) 21, 99, 278, 294
BsoBI CYCGRG 1 cut(s) 645
Bsp119I TTCGAA 3 cut(s) 214, 300, 395
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 2 cut(s) 113, 580
Bsp19I CCATGG 1 cut(s) 148
BspACI CCGC 3 cut(s) 166, 388, 537
BspANI GGCC 4 cut(s) 21, 99, 278, 294
BspCNI CTCAG 2 cut(s) 286, 566
BspDI ATCGAT 1 cut(s) 288
BspFNI CGCG 3 cut(s) 108, 168, 388
BspLI GGNNCC 2 cut(s) 313, 518
BspMAI CTGCAG 1 cut(s) 207
BspMI ACCTGC 1 cut(s) 530
BspT104I TTCGAA 3 cut(s) 214, 300, 395
BspT107I GGYRCC 1 cut(s) 311
BssECI CCNNGG 4 cut(s) 47, 148, 262, 645
BssMI GATC 2 cut(s) 113, 580
BssNI GRCGYC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 158
BstACI GRCGYC 1 cut(s) 312
BstBI TTCGAA 3 cut(s) 214, 300, 395
BstC8I GCNNGC 3 cut(s) 170, 384, 534
BstDEI CTNAG 2 cut(s) 273, 574
BstDSI CCRYGG 1 cut(s) 148
BstF5I GGATG 1 cut(s) 359
BstFNI CGCG 3 cut(s) 108, 168, 388
BstH2I RGCGCY 1 cut(s) 315
BstHHI GCGC 3 cut(s) 110, 314, 388
BstKTI GATC 2 cut(s) 116, 583
BstMAI GTCTC 2 cut(s) 310, 591
BstMBI GATC 2 cut(s) 113, 580
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 5 cut(s) 46, 262, 344, 644, 645
BstSFI CTRYAG 1 cut(s) 203
BstUI CGCG 3 cut(s) 108, 168, 388
BstV1I GCAGC 3 cut(s) 217, 328, 599
Bsu15I ATCGAT 1 cut(s) 288
BsuRI GGCC 4 cut(s) 21, 99, 278, 294
BsuTUI ATCGAT 1 cut(s) 288
BtgI CCRYGG 1 cut(s) 148
BtsCI GGATG 1 cut(s) 359
BveI ACCTGC 1 cut(s) 530
Cac8I GCNNGC 3 cut(s) 170, 384, 534
CaiI CAGNNNCTG 1 cut(s) 263
CfoI GCGC 3 cut(s) 110, 314, 388
Cfr13I GGNCC 1 cut(s) 98
Cfr9I CCCGGG 1 cut(s) 645
ClaI ATCGAT 1 cut(s) 288
Csp6I GTAC 3 cut(s) 80, 349, 371
CviAII CATG 2 cut(s) 77, 149
CviQI GTAC 3 cut(s) 80, 349, 371
DdeI CTNAG 2 cut(s) 273, 574
DinI GGCGCC 1 cut(s) 313
DpnI GATC 2 cut(s) 115, 582
DpnII GATC 2 cut(s) 113, 580
DraI TTTAAA 1 cut(s) 182
EaeI YGGCCR 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 91
Eco88I CYCGRG 1 cut(s) 645
EcoRII CCWGG 1 cut(s) 262
EcoT14I CCWWGG 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 91
EgeI GGCGCC 1 cut(s) 313
EheI GGCGCC 1 cut(s) 313
ErhI CCWWGG 1 cut(s) 148
Esp3I CGTCTC 1 cut(s) 591
FaeI CATG 2 cut(s) 80, 152
FaiI YATR 8 cut(s) 72, 78, 150, 406, 418, 490, 549, 562
FaqI GGGAC 1 cut(s) 245
FatI CATG 2 cut(s) 76, 148
FauI CCCGC 1 cut(s) 381
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 4 cut(s) 206, 342, 537, 588
FokI GGATG 1 cut(s) 366
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 4 cut(s) 206, 342, 537, 588
GlaI GCGC 3 cut(s) 109, 313, 387
GluI GCNGC 4 cut(s) 206, 342, 537, 588
HaeII RGCGCY 1 cut(s) 315
HaeIII GGCC 4 cut(s) 21, 99, 278, 294
HapII CCGG 4 cut(s) 47, 315, 345, 646
HhaI GCGC 3 cut(s) 110, 314, 388
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 2 cut(s) 80, 152
Hin6I GCGC 3 cut(s) 108, 312, 386
HinP1I GCGC 3 cut(s) 108, 312, 386
HinfI GANTC 3 cut(s) 252, 392, 480
HpaII CCGG 4 cut(s) 47, 315, 345, 646
HphI GGTGA 4 cut(s) 203, 278, 368, 590
Hpy188I TCNGA 4 cut(s) 248, 438, 485, 640
Hpy188III TCNNGA 1 cut(s) 131
Hpy99I CGWCG 2 cut(s) 17, 284
HpyAV CCTTC 4 cut(s) 11, 89, 182, 391
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4IV ACGT 2 cut(s) 241, 402
HpyCH4V TGCA 3 cut(s) 205, 503, 623
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 2 cut(s) 273, 574
HpySE526I ACGT 2 cut(s) 241, 402
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 2 cut(s) 80, 152
HspAI GCGC 3 cut(s) 108, 312, 386
KasI GGCGCC 1 cut(s) 311
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 2 cut(s) 113, 580
LmnI GCTCC 2 cut(s) 232, 516
Lsp1109I GCAGC 3 cut(s) 217, 328, 599
MaeII ACGT 2 cut(s) 241, 402
MalI GATC 2 cut(s) 115, 582
MboI GATC 2 cut(s) 113, 580
MboII GAAGA 4 cut(s) 50, 203, 206, 437
MhlI GDGCHC 1 cut(s) 91
MlsI TGGCCA 1 cut(s) 294
MluCI AATT 4 cut(s) 135, 143, 296, 606
MluNI TGGCCA 1 cut(s) 294
Mly113I GGCGCC 1 cut(s) 312
MnlI CCTC 8 cut(s) 44, 47, 384, 401, 432, 457, 561, 569
Mox20I TGGCCA 1 cut(s) 294
MroXI GAANNNNTTC 1 cut(s) 242
MscI TGGCCA 1 cut(s) 294
MseI TTAA 1 cut(s) 181
Msp20I TGGCCA 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 590
MspI CCGG 4 cut(s) 47, 315, 345, 646
MspR9I CCNGG 5 cut(s) 48, 264, 346, 646, 647
MvaI CCWGG 1 cut(s) 264
MvnI CGCG 3 cut(s) 108, 168, 388
MwoI GCNNNNNNNGC 1 cut(s) 105
NarI GGCGCC 1 cut(s) 312
NciI CCSGG 4 cut(s) 48, 346, 646, 647
NcoI CCATGG 1 cut(s) 148
NdeII GATC 2 cut(s) 113, 580
NlaIII CATG 2 cut(s) 80, 152
NlaIV GGNNCC 2 cut(s) 313, 518
NmeAIII GCCGAG 1 cut(s) 110
NspV TTCGAA 3 cut(s) 214, 300, 395
PcsI WCGNNNNNNNCGW 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 242
PfeI GAWTC 3 cut(s) 252, 392, 480
PkrI GCNGC 4 cut(s) 207, 343, 538, 589
PluTI GGCGCC 1 cut(s) 315
PsiI TTATAA 1 cut(s) 549
Psp1406I AACGTT 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 2 cut(s) 313, 518
PspPI GGNCC 1 cut(s) 98
PstI CTGCAG 1 cut(s) 207
PstNI CAGNNNCTG 1 cut(s) 263
PvuII CAGCTG 1 cut(s) 590
RsaI GTAC 3 cut(s) 81, 350, 372
RsaNI GTAC 3 cut(s) 80, 349, 371
SaqAI TTAA 1 cut(s) 181
SatI GCNGC 4 cut(s) 206, 342, 537, 588
Sau3AI GATC 2 cut(s) 113, 580
Sau96I GGNCC 1 cut(s) 98
ScrFI CCNGG 5 cut(s) 48, 264, 346, 646, 647
SduI GDGCHC 1 cut(s) 91
SfcI CTRYAG 1 cut(s) 203
SfoI GGCGCC 1 cut(s) 313
SfuI TTCGAA 3 cut(s) 214, 300, 395
SmaI CCCGGG 1 cut(s) 647
Sse9I AATT 4 cut(s) 135, 143, 296, 606
SsiI CCGC 3 cut(s) 166, 388, 537
SspDI GGCGCC 1 cut(s) 311
StyD4I CCNGG 5 cut(s) 46, 262, 344, 644, 645
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 158
TaiI ACGT 2 cut(s) 244, 405
TaqI TCGA 9 cut(s) 15, 112, 214, 282, 288, 300, 333, 395, 474
TaqII GACCGA 1 cut(s) 55
TasI AATT 4 cut(s) 135, 143, 296, 606
TauI GCSGC 1 cut(s) 539
TfiI GAWTC 3 cut(s) 252, 392, 480
Tru1I TTAA 1 cut(s) 181
Tru9I TTAA 1 cut(s) 181
TseI GCWGC 3 cut(s) 205, 341, 587
TspGWI ACGGA 1 cut(s) 366
TspMI CCCGGG 1 cut(s) 645
XapI RAATTY 1 cut(s) 135
XmaI CCCGGG 1 cut(s) 645
XmnI GAANNNNTTC 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.