pycom07g02630

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0012042
Physical Location & Seq
Reverse (-)
2162741 .. 2163562
822 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g02630.1

Sequence Viewer

Length: 822 bp
ATGGCGGATCTCGAAAATAGGGTCGAATTGGCGGGTAAGCCCAAACCCACCTACTTCTTCAATCGATCGCTTACCATGTACCCAACCACCATGGATGCCCCCAAAAAGCCCCATTTGCAGGCCTCCATCGATCACCACACCAATTCTTTCAAGAAATTCTACAATTCAATCGAGACGGTGCGGTCCGCCAGCAGCTCCTTCAAAGGGAAGGTCAAGAAGCTCTGCAATTTCTTCGAATCGGAGAAACCCGTGTCTCGAAACCCCGATGAATCGCAATCCCTGACGGTCAAGCTAAGACCGTCGAAATCAATGGCCATGCCAAAATCCATGGCGCCCGATTTCCGGATCCTGTCAATTTGGCTGCCGGGCACCGATGATCGGATTGTGGTGTATTTCACGAGTTTGAGAGGAATTCGGAGGACATATGAAGATTGTTATGCTGTGAGGATGATATTCAGAGGGTTTGGGGTTTGGGTCGATGAGAGAGACATATCAATGGATTCGGCTTATCGAAAAGAGTTGCAGAGCGTTTTGGGTGAGAAGAATGTGAGTTTGCCACAAGTATTTATAAGGGGAAAGTATGTGGGAGGTGCTGAGGTGATCAAACAGCTGTTTGAAACCGGTGAATTGGCAAAAATTCTTCAAGGGATTCCCACTCGGAAACCCGGGTATGTGTGCGAAGGTTGTGGGGATGCACGGTTCTTGCCCTGCGTGAATTGCAGTGGGAGTAGGAAGGTGTTCGATGAAGATGAAGGAATGCTGAAGAGGTGCTCCGAATGCAATGAAAACGGTTTGATTCGGTGTCCCGATTGCAGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

274

Amino Acids

30.93

Weight (kDa)

8.97

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 129 - 195 2.2e-13 Glutaredoxin
GRXCR1-2_C PF23733 226 - 272 7.2e-21 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13810
fragaria_vesca FvH4_3g03100 FvH4_7g02860
malus_domestica MD02G1289200.v1.1 MD07G1038000.v1.1
prunus_persica Prupe.2G033200_v2.0.a1
pyrus_communis pycom07g02630
rosa_chinensis RchiOBHm_Chr1g0323791
rosa_laevigata RLG00000030296
rosa_multiflora Rmu_co8205106.1_g000001 Rmu_sc0000252.1_g000031 Rmu_sc0002634.1_g000015
rosa_roxburghii Rroxscaffold_4G00326410
rosa_rugosa Rorug01G0039600
rosa_samantha Rh1AG056800 Rh1BG047800 Rh1CG058100 Rh1DG061900
rosa_wichuraiana Rw1G004840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
AasI GACNNNNNNGTC 1 cut(s) 181
AccB1I GGYRCC 2 cut(s) 331, 368
AccIII TCCGGA 1 cut(s) 342
AciI CCGC 4 cut(s) 5, 32, 181, 186
AclWI GGATC 3 cut(s) 15, 340, 353
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 3 cut(s) 155, 411, 636
AcuI CTGAAG 1 cut(s) 782
AcyI GRCGYC 1 cut(s) 332
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 4 cut(s) 118, 204, 342, 378
AgeI ACCGGT 1 cut(s) 620
AgsI TTSAA 6 cut(s) 61, 151, 168, 202, 617, 644
AloI GAACNNNNNNTCC 2 cut(s) 683, 715
AluBI AGCT 4 cut(s) 195, 220, 292, 610
AluI AGCT 4 cut(s) 195, 220, 292, 610
Alw21I GWGCWC 1 cut(s) 773
Alw26I GTCTC 3 cut(s) 167, 258, 480
AlwI GGATC 3 cut(s) 15, 340, 353
Ama87I CYCGRG 1 cut(s) 665
Aor13HI TCCGGA 1 cut(s) 342
AoxI GGCC 2 cut(s) 120, 312
ApeKI GCWGC 2 cut(s) 192, 361
ApoI RAATTY 3 cut(s) 155, 411, 636
ArsI GACNNNNNNTTYG 3 cut(s) 38, 195, 227
AsiGI ACCGGT 1 cut(s) 620
Asp700I GAANNNNTTC 1 cut(s) 737
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 183
AsuC2I CCSGG 3 cut(s) 366, 666, 667
AsuHPI GGTGA 4 cut(s) 125, 548, 610, 635
AsuII TTCGAA 1 cut(s) 234
AvaI CYCGRG 1 cut(s) 665
AvaII GGWCC 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 371
BalI TGGCCA 1 cut(s) 314
BamHI GGATCC 1 cut(s) 345
BanI GGYRCC 2 cut(s) 331, 368
BauI CACGAG 1 cut(s) 397
Bbv12I GWGCWC 1 cut(s) 773
BbvCI CCTCAGC 1 cut(s) 594
BbvI GCAGC 2 cut(s) 204, 348
BccI CCATC 1 cut(s) 134
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BclI TGATCA 1 cut(s) 600
BcnI CCSGG 3 cut(s) 366, 666, 667
BcoDI GTCTC 3 cut(s) 167, 258, 480
BfoI RGCGCY 1 cut(s) 335
BisI GCNGC 2 cut(s) 193, 362
BlsI GCNGC 2 cut(s) 194, 363
Bme1390I CCNGG 3 cut(s) 366, 666, 667
Bme18I GGWCC 1 cut(s) 183
BmeT110I CYCGRG 1 cut(s) 665
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 3 cut(s) 333, 347, 370
BmrFI CCNGG 3 cut(s) 366, 666, 667
BmsI GCATC 2 cut(s) 85, 682
Bpu10I CCTNAGC 1 cut(s) 594
Bpu14I TTCGAA 1 cut(s) 234
BpuMI CCSGG 3 cut(s) 366, 666, 667
Bsa29I ATCGAT 2 cut(s) 64, 129
BsaHI GRCGYC 1 cut(s) 332
BsaJI CCNNGG 3 cut(s) 90, 327, 665
BsaWI WCCGGW 2 cut(s) 342, 620
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 204, 342, 378
Bse118I RCCGGY 1 cut(s) 620
Bse3DI GCAATG 1 cut(s) 787
BseAI TCCGGA 1 cut(s) 342
BseCI ATCGAT 2 cut(s) 64, 129
BseDI CCNNGG 3 cut(s) 90, 327, 665
BseGI GGATG 3 cut(s) 100, 453, 697
BseLI CCNNNNNNNGG 4 cut(s) 118, 204, 342, 378
BseMI GCAATG 1 cut(s) 787
BseMII CTCAG 1 cut(s) 585
BseSI GKGCMC 1 cut(s) 371
BseXI GCAGC 2 cut(s) 204, 348
Bsh1285I CGRYCG 1 cut(s) 68
BshFI GGCC 2 cut(s) 122, 314
BshNI GGYRCC 2 cut(s) 331, 368
BshTI ACCGGT 1 cut(s) 620
BshVI ATCGAT 2 cut(s) 64, 129
BsiEI CGRYCG 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 773
BsiHKCI CYCGRG 1 cut(s) 665
BsiSI CCGG 4 cut(s) 343, 365, 621, 666
BslFI GGGAC 1 cut(s) 789
BslI CCNNNNNNNGG 4 cut(s) 118, 204, 342, 378
BsmAI GTCTC 3 cut(s) 167, 258, 480
BsmBI CGTCTC 1 cut(s) 167
BsmFI GGGAC 1 cut(s) 789
BsmI GAATGC 2 cut(s) 762, 782
BsnI GGCC 2 cut(s) 122, 314
BsoBI CYCGRG 1 cut(s) 665
Bsp119I TTCGAA 1 cut(s) 234
Bsp1286I GDGCHC 2 cut(s) 371, 773
Bsp13I TCCGGA 1 cut(s) 342
Bsp143I GATC 6 cut(s) 7, 65, 130, 345, 376, 600
Bsp19I CCATGG 2 cut(s) 90, 327
BspACI CCGC 4 cut(s) 5, 32, 181, 186
BspANI GGCC 2 cut(s) 122, 314
BspCNI CTCAG 1 cut(s) 586
BspDI ATCGAT 2 cut(s) 64, 129
BspEI TCCGGA 1 cut(s) 342
BspLI GGNNCC 3 cut(s) 333, 347, 370
BspPI GGATC 3 cut(s) 15, 340, 353
BspT104I TTCGAA 1 cut(s) 234
BspT107I GGYRCC 2 cut(s) 331, 368
BsrDI GCAATG 1 cut(s) 787
BsrFI RCCGGY 1 cut(s) 620
BssAI RCCGGY 1 cut(s) 620
BssECI CCNNGG 3 cut(s) 90, 327, 665
BssMI GATC 6 cut(s) 7, 65, 130, 345, 376, 600
BssNI GRCGYC 1 cut(s) 332
BssSI CACGAG 1 cut(s) 397
BssT1I CCWWGG 2 cut(s) 90, 327
Bst2BI CACGAG 1 cut(s) 397
Bst4CI ACNGT 5 cut(s) 178, 286, 300, 699, 791
Bst6I CTCTTC 1 cut(s) 758
BstACI GRCGYC 1 cut(s) 332
BstBI TTCGAA 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 120, 190
BstDEI CTNAG 2 cut(s) 293, 594
BstDSI CCRYGG 2 cut(s) 90, 327
BstF5I GGATG 3 cut(s) 100, 453, 697
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 6 cut(s) 10, 68, 133, 348, 379, 603
BstMAI GTCTC 3 cut(s) 167, 258, 480
BstMBI GATC 6 cut(s) 7, 65, 130, 345, 376, 600
BstMCI CGRYCG 1 cut(s) 68
BstMWI GCNNNNNNNGC 3 cut(s) 115, 717, 777
BstSCI CCNGG 3 cut(s) 364, 664, 665
BstSLI GKGCMC 1 cut(s) 371
BstV1I GCAGC 2 cut(s) 204, 348
BstX2I RGATCY 2 cut(s) 7, 345
BstYI RGATCY 2 cut(s) 7, 345
Bsu15I ATCGAT 2 cut(s) 64, 129
BsuRI GGCC 2 cut(s) 122, 314
BsuTUI ATCGAT 2 cut(s) 64, 129
BtgI CCRYGG 2 cut(s) 90, 327
BtsCI GGATG 3 cut(s) 100, 453, 697
BtsI GCAGTG 1 cut(s) 727
BtsIMutI CAGTG 1 cut(s) 727
Cac8I GCNNGC 2 cut(s) 120, 190
CfoI GCGC 1 cut(s) 334
Cfr10I RCCGGY 1 cut(s) 620
Cfr13I GGNCC 1 cut(s) 183
Cfr9I CCCGGG 1 cut(s) 665
ClaI ATCGAT 2 cut(s) 64, 129
CpoI CGGWCCG 1 cut(s) 183
Csp6I GTAC 1 cut(s) 79
CspAI ACCGGT 1 cut(s) 620
CspI CGGWCCG 1 cut(s) 183
CviAII CATG 4 cut(s) 76, 91, 316, 328
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 2 cut(s) 293, 594
DinI GGCGCC 1 cut(s) 333
DpnI GATC 6 cut(s) 9, 67, 132, 347, 378, 602
DpnII GATC 6 cut(s) 7, 65, 130, 345, 376, 600
DrdI GACNNNNNNGTC 1 cut(s) 181
DseDI GACNNNNNNGTC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 758
EarI CTCTTC 1 cut(s) 758
EciI GGCGGA 2 cut(s) 20, 175
Eco130I CCWWGG 2 cut(s) 90, 327
Eco147I AGGCCT 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 782
Eco88I CYCGRG 1 cut(s) 665
EcoRI GAATTC 1 cut(s) 411
EcoT14I CCWWGG 2 cut(s) 90, 327
EgeI GGCGCC 1 cut(s) 333
EheI GGCGCC 1 cut(s) 333
ErhI CCWWGG 2 cut(s) 90, 327
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 4 cut(s) 79, 94, 319, 331
FaqI GGGAC 1 cut(s) 789
FatI CATG 4 cut(s) 75, 90, 315, 327
FauI CCCGC 1 cut(s) 25
FauNDI CATATG 1 cut(s) 424
FbaI TGATCA 1 cut(s) 600
Fnu4HI GCNGC 2 cut(s) 193, 362
FokI GGATG 3 cut(s) 107, 460, 704
Fsp4HI GCNGC 2 cut(s) 193, 362
GlaI GCGC 1 cut(s) 333
GluI GCNGC 2 cut(s) 193, 362
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 2 cut(s) 122, 314
HapII CCGG 4 cut(s) 343, 365, 621, 666
HhaI GCGC 1 cut(s) 334
Hin1I GRCGYC 1 cut(s) 332
Hin1II CATG 4 cut(s) 79, 94, 319, 331
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HinfI GANTC 5 cut(s) 236, 269, 500, 649, 796
HpaII CCGG 4 cut(s) 343, 365, 621, 666
HphI GGTGA 4 cut(s) 125, 548, 610, 635
Hpy188I TCNGA 6 cut(s) 241, 381, 417, 458, 660, 775
Hpy188III TCNNGA 8 cut(s) 11, 151, 172, 214, 255, 343, 397, 806
Hpy99I CGWCG 1 cut(s) 304
HpyAV CCTTC 5 cut(s) 202, 208, 674, 727, 746
HpyCH4III ACNGT 5 cut(s) 178, 286, 300, 699, 791
HpyCH4V TGCA 7 cut(s) 118, 225, 523, 695, 720, 780, 813
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 717, 777
HpyF3I CTNAG 2 cut(s) 293, 594
Hsp92I GRCGYC 1 cut(s) 332
Hsp92II CATG 4 cut(s) 79, 94, 319, 331
HspAI GCGC 1 cut(s) 332
KasI GGCGCC 1 cut(s) 331
Kpn2I TCCGGA 1 cut(s) 342
Ksp22I TGATCA 1 cut(s) 600
Kzo9I GATC 6 cut(s) 7, 65, 130, 345, 376, 600
LmnI GCTCC 2 cut(s) 200, 776
LpnPI CCDG 9 cut(s) 104, 202, 293, 356, 362, 378, 634, 679, 721
Lsp1109I GCAGC 2 cut(s) 204, 348
LweI GCATC 2 cut(s) 85, 682
MalI GATC 6 cut(s) 9, 67, 132, 347, 378, 602
MboI GATC 6 cut(s) 7, 65, 130, 345, 376, 600
MboII GAAGA 7 cut(s) 49, 223, 440, 553, 632, 758, 775
MflI RGATCY 2 cut(s) 7, 345
MhlI GDGCHC 2 cut(s) 371, 773
MlsI TGGCCA 1 cut(s) 314
MluNI TGGCCA 1 cut(s) 314
Mly113I GGCGCC 1 cut(s) 332
MnlI CCTC 8 cut(s) 133, 401, 411, 438, 452, 581, 589, 759
Mox20I TGGCCA 1 cut(s) 314
MroI TCCGGA 1 cut(s) 342
MroXI GAANNNNTTC 1 cut(s) 737
MscI TGGCCA 1 cut(s) 314
MseI TTAA 1 cut(s) 820
MslI CAYNNNNRTG 1 cut(s) 494
Msp20I TGGCCA 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 610
MspI CCGG 4 cut(s) 343, 365, 621, 666
MspR9I CCNGG 3 cut(s) 366, 666, 667
Mva1269I GAATGC 2 cut(s) 762, 782
MwoI GCNNNNNNNGC 3 cut(s) 115, 717, 777
NarI GGCGCC 1 cut(s) 332
NciI CCSGG 3 cut(s) 366, 666, 667
NcoI CCATGG 2 cut(s) 90, 327
NdeI CATATG 1 cut(s) 424
NdeII GATC 6 cut(s) 7, 65, 130, 345, 376, 600
NlaIII CATG 4 cut(s) 79, 94, 319, 331
NlaIV GGNNCC 3 cut(s) 333, 347, 370
NspV TTCGAA 1 cut(s) 234
PceI AGGCCT 1 cut(s) 122
PctI GAATGC 2 cut(s) 762, 782
PdmI GAANNNNTTC 1 cut(s) 737
PfeI GAWTC 5 cut(s) 236, 269, 500, 649, 796
PinAI ACCGGT 1 cut(s) 620
PkrI GCNGC 2 cut(s) 194, 363
Ple19I CGATCG 1 cut(s) 68
PluTI GGCGCC 1 cut(s) 335
PsiI TTATAA 1 cut(s) 569
PspN4I GGNNCC 3 cut(s) 333, 347, 370
PspPI GGNCC 1 cut(s) 183
PsuI RGATCY 2 cut(s) 7, 345
PvuI CGATCG 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 610
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 494
Rsr2I CGGWCCG 1 cut(s) 183
RsrII CGGWCCG 1 cut(s) 183
SaqAI TTAA 1 cut(s) 820
SatI GCNGC 2 cut(s) 193, 362
Sau3AI GATC 6 cut(s) 7, 65, 130, 345, 376, 600
Sau96I GGNCC 1 cut(s) 183
ScrFI CCNGG 3 cut(s) 366, 666, 667
SduI GDGCHC 2 cut(s) 371, 773
SfaNI GCATC 2 cut(s) 85, 682
SfoI GGCGCC 1 cut(s) 333
SfuI TTCGAA 1 cut(s) 234
SinI GGWCC 1 cut(s) 183
SmaI CCCGGG 1 cut(s) 667
SmiMI CAYNNNNRTG 1 cut(s) 494
SseBI AGGCCT 1 cut(s) 122
SsiI CCGC 4 cut(s) 5, 32, 181, 186
SspDI GGCGCC 1 cut(s) 331
StuI AGGCCT 1 cut(s) 122
StyD4I CCNGG 3 cut(s) 364, 664, 665
StyI CCWWGG 2 cut(s) 90, 327
TaaI ACNGT 5 cut(s) 178, 286, 300, 699, 791
TfiI GAWTC 5 cut(s) 236, 269, 500, 649, 796
Tru1I TTAA 1 cut(s) 820
Tru9I TTAA 1 cut(s) 820
TscAI CASTG 1 cut(s) 727
TseI GCWGC 2 cut(s) 192, 361
TspDTI ATGAA 5 cut(s) 282, 441, 759, 765, 798
TspMI CCCGGG 1 cut(s) 665
TspRI CASTG 1 cut(s) 727
VpaK11BI GGWCC 1 cut(s) 183
XapI RAATTY 3 cut(s) 155, 411, 636
XmaI CCCGGG 1 cut(s) 665
XmnI GAANNNNTTC 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.