FvH4_3g03100

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012042
Physical Location & Seq
Reverse (-)
1657959 .. 1658828
870 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03100.t1

Sequence Viewer

Length: 657 bp
ATGTACGCAGAGCCGAAGAAGGCCCACCACGCGCTCGACCACGCCGGCTCCTTCAAGAAACTCTACAACTCCATGGAGACCATGCGTTCCGCCAGCAGCTCTTTTAAAGGAAAGGTGAAGAGACTTTGCAGCTTTTTCGAAACGGACAAGCTCCCGCCGCCTCGAAACGTTTCGGAGGAGACAATTCAATCGCTTGGGAAGCAGCTCAGGCCGTCGAAATCCATGGTGCATTCAAAGTCTCTGGGGCCAGATTTTCAGGTGCTGTCGATTAGGCTGCCGGGGACGGATGACAGGATTGTAATGTACCTCACTAGCTTGCGCGGGGTTCGCAGGACTTATGAGGATTGTTATGCTGTGAAGAATATATTCCGAGGGTTTGGGGTTTGGGTTGATGAGAGTGATATTTCCATGGATTCGGCTTATAGGAAAGAGTTGCAGAGAGTTTTGGGTGCCAAGAATGTGAGTTTGCCTCAGGTTTTTATAAAGGGGAAATATGTGGGTGGTGCCGAGGTGATCAAGCAGCTGTTTGAGACCGGAGAGTTGGCAAAGATATTGCAAGGGCTTCCCAGTCGGAAACCTAGGTCTGTGTGTGGGGGTTGTGGGGATGCGAGGTTTGTGCCGTGCATGAATTGCAGTGGGAGCAGGAAGGTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

219

Amino Acids

24.37

Weight (kDa)

9.69

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 101 - 166 8.1e-13 Glutaredoxin
GRXCR1-2_C PF23733 197 - 218 1.1e-07 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13810
fragaria_vesca FvH4_3g03100 FvH4_7g02860
malus_domestica MD02G1289200.v1.1 MD07G1038000.v1.1
prunus_persica Prupe.2G033200_v2.0.a1
pyrus_communis pycom07g02630
rosa_chinensis RchiOBHm_Chr1g0323791
rosa_laevigata RLG00000030296
rosa_multiflora Rmu_co8205106.1_g000001 Rmu_sc0000252.1_g000031 Rmu_sc0002634.1_g000015
rosa_roxburghii Rroxscaffold_4G00326410
rosa_rugosa Rorug01G0039600
rosa_samantha Rh1AG056800 Rh1BG047800 Rh1CG058100 Rh1DG061900
rosa_wichuraiana Rw1G004840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 482
AccB1I GGYRCC 2 cut(s) 449, 503
AccII CGCG 2 cut(s) 32, 321
AciI CCGC 4 cut(s) 90, 155, 158, 321
AclI AACGTT 1 cut(s) 168
AfaI GTAC 2 cut(s) 5, 305
AgsI TTSAA 3 cut(s) 55, 188, 234
AluBI AGCT 6 cut(s) 99, 132, 151, 205, 315, 523
AluI AGCT 6 cut(s) 99, 132, 151, 205, 315, 523
Alw26I GTCTC 5 cut(s) 71, 115, 173, 243, 524
AlwNI CAGNNNCTG 1 cut(s) 262
AoxI GGCC 3 cut(s) 21, 209, 245
ApeKI GCWGC 5 cut(s) 96, 129, 202, 274, 520
Asp700I GAANNNNTTC 2 cut(s) 169, 365
AspA2I CCTAGG 1 cut(s) 578
AspLEI GCGC 2 cut(s) 34, 321
AspS9I GGNCC 2 cut(s) 22, 245
AsuC2I CCSGG 1 cut(s) 279
AsuHPI GGTGA 2 cut(s) 127, 523
AsuII TTCGAA 1 cut(s) 138
AvrII CCTAGG 1 cut(s) 578
AxyI CCTNAGG 1 cut(s) 471
BanI GGYRCC 2 cut(s) 449, 503
BbvI GCAGC 5 cut(s) 108, 141, 214, 261, 532
BceAI ACGGC 2 cut(s) 196, 604
BcgI CGANNNNNNTGC 6 cut(s) 118, 152, 256, 290, 598, 632
BclI TGATCA 1 cut(s) 513
BcnI CCSGG 1 cut(s) 279
BcoDI GTCTC 5 cut(s) 71, 115, 173, 243, 524
BfaI CTAG 2 cut(s) 312, 579
BisI GCNGC 6 cut(s) 97, 130, 158, 203, 275, 521
BlnI CCTAGG 1 cut(s) 578
BlsI GCNGC 6 cut(s) 98, 131, 159, 204, 276, 522
Bme1390I CCNGG 1 cut(s) 279
BmgT120I GGNCC 2 cut(s) 22, 245
BmiI GGNNCC 4 cut(s) 49, 246, 451, 505
BmrFI CCNGG 1 cut(s) 279
BmrI ACTGGG 1 cut(s) 561
BmsI GCATC 1 cut(s) 595
BmuI ACTGGG 1 cut(s) 561
BplI GAGNNNNNCTC 2 cut(s) 454, 486
Bpu10I CCTNAGC 1 cut(s) 206
Bpu14I TTCGAA 1 cut(s) 138
BpuMI CCSGG 1 cut(s) 279
BsaI GGTCTC 2 cut(s) 71, 524
BsaJI CCNNGG 7 cut(s) 72, 222, 278, 370, 408, 507, 578
BsaWI WCCGGW 1 cut(s) 533
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 567
Bse21I CCTNAGG 1 cut(s) 471
BseDI CCNNGG 7 cut(s) 72, 222, 278, 370, 408, 507, 578
BseGI GGATG 2 cut(s) 292, 610
BseMII CTCAG 2 cut(s) 220, 485
BseNI ACTGG 1 cut(s) 567
BseRI GAGGAG 1 cut(s) 191
BseXI GCAGC 5 cut(s) 108, 141, 214, 261, 532
Bsh1236I CGCG 2 cut(s) 32, 321
BshFI GGCC 3 cut(s) 23, 211, 247
BshNI GGYRCC 2 cut(s) 449, 503
BsiSI CCGG 3 cut(s) 45, 278, 534
BslFI GGGAC 1 cut(s) 295
BsmAI GTCTC 5 cut(s) 71, 115, 173, 243, 524
BsmFI GGGAC 1 cut(s) 295
BsmI GAATGC 1 cut(s) 229
BsnI GGCC 3 cut(s) 23, 211, 247
Bso31I GGTCTC 2 cut(s) 71, 524
Bsp119I TTCGAA 1 cut(s) 138
Bsp143I GATC 1 cut(s) 513
Bsp19I CCATGG 3 cut(s) 72, 222, 408
BspACI CCGC 4 cut(s) 90, 155, 158, 321
BspANI GGCC 3 cut(s) 23, 211, 247
BspCNI CTCAG 2 cut(s) 219, 484
BspFNI CGCG 2 cut(s) 32, 321
BspLI GGNNCC 4 cut(s) 49, 246, 451, 505
BspT104I TTCGAA 1 cut(s) 138
BspT107I GGYRCC 2 cut(s) 449, 503
BspTNI GGTCTC 2 cut(s) 71, 524
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 1 cut(s) 567
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 7 cut(s) 72, 222, 278, 370, 408, 507, 578
BssMI GATC 1 cut(s) 513
BssT1I CCWWGG 4 cut(s) 72, 222, 408, 578
Bst6I CTCTTC 1 cut(s) 113
BstAPI GCANNNNNTGC 1 cut(s) 630
BstBI TTCGAA 1 cut(s) 138
BstC8I GCNNGC 3 cut(s) 46, 94, 317
BstDEI CTNAG 2 cut(s) 206, 471
BstDSI CCRYGG 3 cut(s) 72, 222, 408
BstF5I GGATG 2 cut(s) 292, 610
BstFNI CGCG 2 cut(s) 32, 321
BstHHI GCGC 2 cut(s) 34, 321
BstKTI GATC 1 cut(s) 516
BstMAI GTCTC 5 cut(s) 71, 115, 173, 243, 524
BstMBI GATC 1 cut(s) 513
BstMWI GCNNNNNNNGC 7 cut(s) 29, 157, 199, 208, 327, 630, 639
BstSCI CCNGG 1 cut(s) 277
BstUI CGCG 2 cut(s) 32, 321
BstV1I GCAGC 5 cut(s) 108, 141, 214, 261, 532
Bsu36I CCTNAGG 1 cut(s) 471
BsuRI GGCC 3 cut(s) 23, 211, 247
BtgI CCRYGG 3 cut(s) 72, 222, 408
BtsCI GGATG 2 cut(s) 292, 610
BtsI GCAGTG 1 cut(s) 640
BtsIMutI CAGTG 1 cut(s) 640
Cac8I GCNNGC 3 cut(s) 46, 94, 317
CaiI CAGNNNCTG 1 cut(s) 262
CfoI GCGC 2 cut(s) 34, 321
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 22, 245
Csp6I GTAC 2 cut(s) 4, 304
CviAII CATG 5 cut(s) 73, 82, 223, 409, 625
CviQI GTAC 2 cut(s) 4, 304
DdeI CTNAG 2 cut(s) 206, 471
DpnI GATC 1 cut(s) 515
DpnII GATC 1 cut(s) 513
DraI TTTAAA 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
EciI GGCGGA 1 cut(s) 79
Eco130I CCWWGG 4 cut(s) 72, 222, 408, 578
Eco31I GGTCTC 2 cut(s) 71, 524
Eco81I CCTNAGG 1 cut(s) 471
EcoT14I CCWWGG 4 cut(s) 72, 222, 408, 578
ErhI CCWWGG 4 cut(s) 72, 222, 408, 578
FaeI CATG 5 cut(s) 76, 85, 226, 412, 628
FaqI GGGAC 1 cut(s) 295
FatI CATG 5 cut(s) 72, 81, 222, 408, 624
FauI CCCGC 2 cut(s) 162, 314
FbaI TGATCA 1 cut(s) 513
Fnu4HI GCNGC 6 cut(s) 97, 130, 158, 203, 275, 521
FokI GGATG 2 cut(s) 299, 617
Fsp4HI GCNGC 6 cut(s) 97, 130, 158, 203, 275, 521
FspBI CTAG 2 cut(s) 312, 579
GlaI GCGC 2 cut(s) 33, 320
GluI GCNGC 6 cut(s) 97, 130, 158, 203, 275, 521
HaeIII GGCC 3 cut(s) 23, 211, 247
HapII CCGG 3 cut(s) 45, 278, 534
HhaI GCGC 2 cut(s) 34, 321
Hin1II CATG 5 cut(s) 76, 85, 226, 412, 628
Hin6I GCGC 2 cut(s) 32, 319
HinP1I GCGC 2 cut(s) 32, 319
HinfI GANTC 1 cut(s) 413
HpaII CCGG 3 cut(s) 45, 278, 534
HphI GGTGA 2 cut(s) 127, 523
Hpy188I TCNGA 3 cut(s) 175, 371, 573
Hpy188III TCNNGA 1 cut(s) 55
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 3 cut(s) 13, 61, 640
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 6 cut(s) 129, 229, 436, 556, 624, 633
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 157, 199, 208, 327, 630, 639
HpyF3I CTNAG 2 cut(s) 206, 471
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 5 cut(s) 76, 85, 226, 412, 628
HspAI GCGC 2 cut(s) 32, 319
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 513
Kzo9I GATC 1 cut(s) 513
LmnI GCTCC 3 cut(s) 53, 156, 639
Lsp1109I GCAGC 5 cut(s) 108, 141, 214, 261, 532
LweI GCATC 1 cut(s) 595
MaeI CTAG 2 cut(s) 312, 579
MaeII ACGT 1 cut(s) 168
MalI GATC 1 cut(s) 515
MboI GATC 1 cut(s) 513
MboII GAAGA 3 cut(s) 28, 130, 370
MluCI AATT 2 cut(s) 183, 628
MmeI TCCRAC 1 cut(s) 551
MnlI CCTC 8 cut(s) 169, 171, 317, 334, 365, 480, 502, 603
MroNI GCCGGC 1 cut(s) 44
MroXI GAANNNNTTC 2 cut(s) 169, 365
MseI TTAA 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 523
MspI CCGG 3 cut(s) 45, 278, 534
MspR9I CCNGG 1 cut(s) 279
Mva1269I GAATGC 1 cut(s) 229
MvnI CGCG 2 cut(s) 32, 321
MwoI GCNNNNNNNGC 7 cut(s) 29, 157, 199, 208, 327, 630, 639
NaeI GCCGGC 1 cut(s) 46
NciI CCSGG 1 cut(s) 279
NcoI CCATGG 3 cut(s) 72, 222, 408
NdeII GATC 1 cut(s) 513
NgoMIV GCCGGC 1 cut(s) 44
NlaIII CATG 5 cut(s) 76, 85, 226, 412, 628
NlaIV GGNNCC 4 cut(s) 49, 246, 451, 505
NmeAIII GCCGAG 1 cut(s) 532
NspV TTCGAA 1 cut(s) 138
PctI GAATGC 1 cut(s) 229
PdiI GCCGGC 1 cut(s) 46
PdmI GAANNNNTTC 2 cut(s) 169, 365
PfeI GAWTC 1 cut(s) 413
PkrI GCNGC 6 cut(s) 98, 131, 159, 204, 276, 522
PsiI TTATAA 1 cut(s) 482
Psp1406I AACGTT 1 cut(s) 168
PspN4I GGNNCC 4 cut(s) 49, 246, 451, 505
PspPI GGNCC 2 cut(s) 22, 245
PstNI CAGNNNCTG 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 523
RsaI GTAC 2 cut(s) 5, 305
RsaNI GTAC 2 cut(s) 4, 304
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 6 cut(s) 97, 130, 158, 203, 275, 521
Sau3AI GATC 1 cut(s) 513
Sau96I GGNCC 2 cut(s) 22, 245
ScrFI CCNGG 1 cut(s) 279
SfaNI GCATC 1 cut(s) 595
SfuI TTCGAA 1 cut(s) 138
Sse9I AATT 2 cut(s) 183, 628
SsiI CCGC 4 cut(s) 90, 155, 158, 321
SspMI CTAG 2 cut(s) 312, 579
StyD4I CCNGG 1 cut(s) 277
StyI CCWWGG 4 cut(s) 72, 222, 408, 578
TaiI ACGT 1 cut(s) 171
TaqI TCGA 5 cut(s) 36, 138, 163, 215, 266
TasI AATT 2 cut(s) 183, 628
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 640
TseI GCWGC 5 cut(s) 96, 129, 202, 274, 520
TspDTI ATGAA 1 cut(s) 641
TspGWI ACGGA 2 cut(s) 158, 299
TspRI CASTG 1 cut(s) 640
XmaJI CCTAGG 1 cut(s) 578
XmnI GAANNNNTTC 2 cut(s) 169, 365
XspI CTAG 2 cut(s) 312, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.