MD02G1289200.v1.1

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0012042
Physical Location & Seq
Forward (+)
34542769 .. 34543633
865 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1289200.v1.1.491

Sequence Viewer

Length: 822 bp
ATGGCGGATCTCCAAAACAAGGTCGAATTGGCGGGTAAGCCCAAACCCACCTACTTCTTCAATCGATCGCTTAGCATGTACCCAACCCCCATGGATGCCCCTCAAAAGCCCCGTTTCCAGGCCACCATCGATCACCAGACCGATTCCTTCAAGAAATTCTACAATTCCATCGAGACGGTGCGGTCCGCCAGCAGCTCCTTCAAAGGGAAGGTCAAAAAGCTCTGCAGTTTTTTCGAAACGGAGAAACCCGTGTCACGAAACCCCGACGAGTCTAAATCCCTGACGGTCAAGCTACGACCGTCGAAATCAATGGCCTTGTCGAAATCCATGGCGCCCGATTTTCGGATCCTGTCAATACGGTTGCCAGGCACCGATGATCGGATTGTGGTGTATTTGACGAGTTTGAGAGGAGTTCGGAGGACATACGAGGATTGTTATGCTGTGAGGATGATATTCAGAGGGTTTGGGGTTTGGGTTGATGAGAGAGACATATCAATGGATTCGGCGTATCGAAAAGAGTTGCAGAGCGTTCTGGGTGAGAAGAATGTGAGTTTGCCACAAGTATTTATAAGGGGAAAGTATGTGGGAGGTGCTGAGGTAATCAAACAGCTGTTTGAAACCGGTGAATTGGCAAAAATACTTCAAGGGATTCCCACTCGGAAACCCGGGTATGTGTGCGAAGGTTGTGGGGATGCGCGGTTCGCGCCTTGTGTGAATTGCAGTGGGAGTAGGAAGGTGTTTGATGAAGAGGAAGGAATGCTCAAGAGGTGCACCGAATGCAATGAAAACGGTTTGATTCGGTGTCCTGATTGCAGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

274

Amino Acids

30.81

Weight (kDa)

9.12

Isoelectric Point (pI)

39.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 129 - 195 1.4e-12 Glutaredoxin
GRXCR1-2_C PF23733 226 - 272 2.1e-20 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13810
fragaria_vesca FvH4_3g03100 FvH4_7g02860
malus_domestica MD02G1289200.v1.1 MD07G1038000.v1.1
prunus_persica Prupe.2G033200_v2.0.a1
pyrus_communis pycom07g02630
rosa_chinensis RchiOBHm_Chr1g0323791
rosa_laevigata RLG00000030296
rosa_multiflora Rmu_co8205106.1_g000001 Rmu_sc0000252.1_g000031 Rmu_sc0002634.1_g000015
rosa_roxburghii Rroxscaffold_4G00326410
rosa_rugosa Rorug01G0039600
rosa_samantha Rh1AG056800 Rh1BG047800 Rh1CG058100 Rh1DG061900
rosa_wichuraiana Rw1G004840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
AasI GACNNNNNNGTC 1 cut(s) 181
AccB1I GGYRCC 2 cut(s) 331, 368
AccII CGCG 2 cut(s) 697, 704
AciI CCGC 5 cut(s) 5, 32, 181, 186, 697
AclWI GGATC 3 cut(s) 15, 340, 353
AcsI RAATTY 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 332
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 5 cut(s) 19, 118, 204, 342, 378
AgeI ACCGGT 1 cut(s) 620
AgsI TTSAA 5 cut(s) 61, 151, 202, 617, 644
AjnI CCWGG 2 cut(s) 117, 364
AloI GAACNNNNNNTCC 2 cut(s) 683, 715
AluBI AGCT 4 cut(s) 195, 220, 292, 610
AluI AGCT 4 cut(s) 195, 220, 292, 610
Alw21I GWGCWC 1 cut(s) 773
Alw26I GTCTC 2 cut(s) 167, 480
Alw44I GTGCAC 1 cut(s) 769
AlwI GGATC 3 cut(s) 15, 340, 353
AlwNI CAGNNNCTG 1 cut(s) 819
Ama87I CYCGRG 1 cut(s) 665
AoxI GGCC 2 cut(s) 120, 312
ApaLI GTGCAC 1 cut(s) 769
ApeKI GCWGC 1 cut(s) 192
ApoI RAATTY 1 cut(s) 155
ArsI GACNNNNNNTTYG 2 cut(s) 195, 227
AsiGI ACCGGT 1 cut(s) 620
AspLEI GCGC 3 cut(s) 334, 697, 706
AspS9I GGNCC 1 cut(s) 183
AsuC2I CCSGG 2 cut(s) 666, 667
AsuHPI GGTGA 3 cut(s) 125, 548, 635
AsuII TTCGAA 1 cut(s) 234
AvaI CYCGRG 1 cut(s) 665
AvaII GGWCC 1 cut(s) 183
BaeGI GKGCMC 1 cut(s) 773
BamHI GGATCC 1 cut(s) 345
BanI GGYRCC 2 cut(s) 331, 368
Bbv12I GWGCWC 1 cut(s) 773
BbvCI CCTCAGC 1 cut(s) 594
BbvI GCAGC 1 cut(s) 204
BccI CCATC 2 cut(s) 134, 176
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BciT130I CCWGG 2 cut(s) 119, 366
BcnI CCSGG 2 cut(s) 666, 667
BcoDI GTCTC 2 cut(s) 167, 480
BfmI CTRYAG 1 cut(s) 223
BfoI RGCGCY 1 cut(s) 335
BisI GCNGC 1 cut(s) 193
BlpI GCTNAGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 194
Bme1390I CCNGG 4 cut(s) 119, 366, 666, 667
Bme18I GGWCC 1 cut(s) 183
BmeT110I CYCGRG 1 cut(s) 665
BmgT120I GGNCC 1 cut(s) 183
BmiI GGNNCC 3 cut(s) 333, 347, 370
BmrFI CCNGG 4 cut(s) 119, 366, 666, 667
BmsI GCATC 2 cut(s) 85, 682
Bpu10I CCTNAGC 1 cut(s) 594
Bpu1102I GCTNAGC 1 cut(s) 71
Bpu14I TTCGAA 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 746
BpuMI CCSGG 2 cut(s) 666, 667
Bsa29I ATCGAT 2 cut(s) 64, 129
BsaHI GRCGYC 1 cut(s) 332
BsaJI CCNNGG 3 cut(s) 90, 327, 665
BsaWI WCCGGW 1 cut(s) 620
Bsc4I CCNNNNNNNGG 5 cut(s) 19, 118, 204, 342, 378
Bse118I RCCGGY 1 cut(s) 620
Bse3DI GCAATG 1 cut(s) 787
BseBI CCWGG 2 cut(s) 119, 366
BseCI ATCGAT 2 cut(s) 64, 129
BseDI CCNNGG 3 cut(s) 90, 327, 665
BseGI GGATG 3 cut(s) 100, 453, 697
BseLI CCNNNNNNNGG 5 cut(s) 19, 118, 204, 342, 378
BseMI GCAATG 1 cut(s) 787
BseMII CTCAG 1 cut(s) 585
BseRI GAGGAG 1 cut(s) 423
BseSI GKGCMC 1 cut(s) 773
BseXI GCAGC 1 cut(s) 204
Bsh1236I CGCG 2 cut(s) 697, 704
Bsh1285I CGRYCG 2 cut(s) 68, 299
BshFI GGCC 2 cut(s) 122, 314
BshNI GGYRCC 2 cut(s) 331, 368
BshTI ACCGGT 1 cut(s) 620
BshVI ATCGAT 2 cut(s) 64, 129
BsiEI CGRYCG 2 cut(s) 68, 299
BsiHKAI GWGCWC 1 cut(s) 773
BsiHKCI CYCGRG 1 cut(s) 665
BsiSI CCGG 2 cut(s) 621, 666
BslI CCNNNNNNNGG 5 cut(s) 19, 118, 204, 342, 378
BsmAI GTCTC 2 cut(s) 167, 480
BsmBI CGTCTC 1 cut(s) 167
BsmI GAATGC 2 cut(s) 762, 782
BsnI GGCC 2 cut(s) 122, 314
BsoBI CYCGRG 1 cut(s) 665
Bsp119I TTCGAA 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 773
Bsp143I GATC 5 cut(s) 7, 65, 130, 345, 376
Bsp1720I GCTNAGC 1 cut(s) 71
Bsp19I CCATGG 2 cut(s) 90, 327
BspACI CCGC 5 cut(s) 5, 32, 181, 186, 697
BspANI GGCC 2 cut(s) 122, 314
BspCNI CTCAG 1 cut(s) 586
BspDI ATCGAT 2 cut(s) 64, 129
BspFNI CGCG 2 cut(s) 697, 704
BspLI GGNNCC 3 cut(s) 333, 347, 370
BspMAI CTGCAG 1 cut(s) 227
BspPI GGATC 3 cut(s) 15, 340, 353
BspT104I TTCGAA 1 cut(s) 234
BspT107I GGYRCC 2 cut(s) 331, 368
BsrDI GCAATG 1 cut(s) 787
BsrFI RCCGGY 1 cut(s) 620
BssAI RCCGGY 1 cut(s) 620
BssECI CCNNGG 3 cut(s) 90, 327, 665
BssMI GATC 5 cut(s) 7, 65, 130, 345, 376
BssNI GRCGYC 1 cut(s) 332
BssT1I CCWWGG 2 cut(s) 90, 327
Bst2UI CCWGG 2 cut(s) 119, 366
Bst4CI ACNGT 5 cut(s) 178, 286, 300, 360, 791
Bst6I CTCTTC 1 cut(s) 741
BstACI GRCGYC 1 cut(s) 332
BstAPI GCANNNNNTGC 1 cut(s) 777
BstBI TTCGAA 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 2 cut(s) 71, 594
BstDSI CCRYGG 2 cut(s) 90, 327
BstF5I GGATG 3 cut(s) 100, 453, 697
BstFNI CGCG 2 cut(s) 697, 704
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 3 cut(s) 334, 697, 706
BstKTI GATC 5 cut(s) 10, 68, 133, 348, 379
BstMAI GTCTC 2 cut(s) 167, 480
BstMBI GATC 5 cut(s) 7, 65, 130, 345, 376
BstMCI CGRYCG 2 cut(s) 68, 299
BstMWI GCNNNNNNNGC 3 cut(s) 701, 703, 777
BstNI CCWGG 2 cut(s) 119, 366
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 4 cut(s) 117, 364, 664, 665
BstSFI CTRYAG 1 cut(s) 223
BstSLI GKGCMC 1 cut(s) 773
BstUI CGCG 2 cut(s) 697, 704
BstV1I GCAGC 1 cut(s) 204
BstX2I RGATCY 2 cut(s) 7, 345
BstYI RGATCY 2 cut(s) 7, 345
Bsu15I ATCGAT 2 cut(s) 64, 129
BsuRI GGCC 2 cut(s) 122, 314
BsuTUI ATCGAT 2 cut(s) 64, 129
BtgI CCRYGG 2 cut(s) 90, 327
BtsCI GGATG 3 cut(s) 100, 453, 697
BtsI GCAGTG 1 cut(s) 727
BtsIMutI CAGTG 1 cut(s) 727
Cac8I GCNNGC 1 cut(s) 190
CaiI CAGNNNCTG 1 cut(s) 819
CfoI GCGC 3 cut(s) 334, 697, 706
Cfr10I RCCGGY 1 cut(s) 620
Cfr13I GGNCC 1 cut(s) 183
Cfr9I CCCGGG 1 cut(s) 665
ClaI ATCGAT 2 cut(s) 64, 129
CpoI CGGWCCG 1 cut(s) 183
Csp6I GTAC 1 cut(s) 79
CspAI ACCGGT 1 cut(s) 620
CspI CGGWCCG 1 cut(s) 183
CviAII CATG 3 cut(s) 76, 91, 328
CviJI RGCY 8 cut(s) 40, 109, 122, 195, 220, 292, 314, 610
CviKI_1 RGCY 8 cut(s) 40, 109, 122, 195, 220, 292, 314, 610
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 2 cut(s) 71, 594
DinI GGCGCC 1 cut(s) 333
DpnI GATC 5 cut(s) 9, 67, 132, 347, 378
DpnII GATC 5 cut(s) 7, 65, 130, 345, 376
DrdI GACNNNNNNGTC 1 cut(s) 181
DseDI GACNNNNNNGTC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 741
EarI CTCTTC 1 cut(s) 741
EciI GGCGGA 2 cut(s) 20, 175
Eco130I CCWWGG 2 cut(s) 90, 327
Eco47I GGWCC 1 cut(s) 183
Eco88I CYCGRG 1 cut(s) 665
EcoRII CCWGG 2 cut(s) 117, 364
EcoT14I CCWWGG 2 cut(s) 90, 327
EgeI GGCGCC 1 cut(s) 333
EheI GGCGCC 1 cut(s) 333
ErhI CCWWGG 2 cut(s) 90, 327
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 3 cut(s) 79, 94, 331
FaiI YATR 9 cut(s) 77, 92, 329, 424, 438, 491, 569, 582, 672
FatI CATG 3 cut(s) 75, 90, 327
FauI CCCGC 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 193
FokI GGATG 3 cut(s) 107, 460, 704
Fsp4HI GCNGC 1 cut(s) 193
GlaI GCGC 3 cut(s) 333, 696, 705
GluI GCNGC 1 cut(s) 193
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 2 cut(s) 122, 314
HapII CCGG 2 cut(s) 621, 666
HhaI GCGC 3 cut(s) 334, 697, 706
Hin1I GRCGYC 1 cut(s) 332
Hin1II CATG 3 cut(s) 79, 94, 331
Hin6I GCGC 3 cut(s) 332, 695, 704
HinP1I GCGC 3 cut(s) 332, 695, 704
HinfI GANTC 5 cut(s) 143, 269, 500, 649, 796
HpaII CCGG 2 cut(s) 621, 666
HphI GGTGA 3 cut(s) 125, 548, 635
Hpy166II GTNNAC 1 cut(s) 771
Hpy188I TCNGA 5 cut(s) 345, 381, 417, 458, 660
Hpy188III TCNNGA 5 cut(s) 151, 172, 255, 763, 806
Hpy8I GTNNAC 1 cut(s) 771
Hpy99I CGWCG 2 cut(s) 269, 304
HpyAV CCTTC 6 cut(s) 157, 202, 208, 674, 727, 746
HpyCH4III ACNGT 5 cut(s) 178, 286, 300, 360, 791
HpyCH4V TGCA 6 cut(s) 225, 523, 720, 771, 780, 813
HpyF10VI GCNNNNNNNGC 3 cut(s) 701, 703, 777
HpyF3I CTNAG 2 cut(s) 71, 594
Hsp92I GRCGYC 1 cut(s) 332
Hsp92II CATG 3 cut(s) 79, 94, 331
HspAI GCGC 3 cut(s) 332, 695, 704
KasI GGCGCC 1 cut(s) 331
Kzo9I GATC 5 cut(s) 7, 65, 130, 345, 376
LmnI GCTCC 1 cut(s) 200
Lsp1109I GCAGC 1 cut(s) 204
LweI GCATC 2 cut(s) 85, 682
MaeIII GTNAC 1 cut(s) 252
MalI GATC 5 cut(s) 9, 67, 132, 347, 378
MboI GATC 5 cut(s) 7, 65, 130, 345, 376
MboII GAAGA 3 cut(s) 49, 553, 758
MflI RGATCY 2 cut(s) 7, 345
MhlI GDGCHC 1 cut(s) 773
MluCI AATT 5 cut(s) 26, 155, 163, 626, 715
Mly113I GGCGCC 1 cut(s) 332
MlyI GAGTC 1 cut(s) 278
MslI CAYNNNNRTG 1 cut(s) 494
MspA1I CMGCKG 1 cut(s) 610
MspI CCGG 2 cut(s) 621, 666
MspR9I CCNGG 4 cut(s) 119, 366, 666, 667
Mva1269I GAATGC 2 cut(s) 762, 782
MvaI CCWGG 2 cut(s) 119, 366
MvnI CGCG 2 cut(s) 697, 704
MwoI GCNNNNNNNGC 3 cut(s) 701, 703, 777
NarI GGCGCC 1 cut(s) 332
NciI CCSGG 2 cut(s) 666, 667
NcoI CCATGG 2 cut(s) 90, 327
NdeII GATC 5 cut(s) 7, 65, 130, 345, 376
NlaIII CATG 3 cut(s) 79, 94, 331
NlaIV GGNNCC 3 cut(s) 333, 347, 370
NmuCI GTSAC 1 cut(s) 252
NspI RCATGY 1 cut(s) 79
NspV TTCGAA 1 cut(s) 234
PctI GAATGC 2 cut(s) 762, 782
PfeI GAWTC 4 cut(s) 143, 500, 649, 796
PinAI ACCGGT 1 cut(s) 620
PkrI GCNGC 1 cut(s) 194
Ple19I CGATCG 1 cut(s) 68
PleI GAGTC 1 cut(s) 277
PluTI GGCGCC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 277
PsiI TTATAA 1 cut(s) 569
Psp6I CCWGG 2 cut(s) 117, 364
PspGI CCWGG 2 cut(s) 117, 364
PspN4I GGNNCC 3 cut(s) 333, 347, 370
PspPI GGNCC 1 cut(s) 183
PstI CTGCAG 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 819
PsuI RGATCY 2 cut(s) 7, 345
PvuI CGATCG 1 cut(s) 68
PvuII CAGCTG 1 cut(s) 610
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
RseI CAYNNNNRTG 1 cut(s) 494
Rsr2I CGGWCCG 1 cut(s) 183
RsrII CGGWCCG 1 cut(s) 183
SatI GCNGC 1 cut(s) 193
Sau3AI GATC 5 cut(s) 7, 65, 130, 345, 376
Sau96I GGNCC 1 cut(s) 183
SchI GAGTC 1 cut(s) 278
ScrFI CCNGG 4 cut(s) 119, 366, 666, 667
SduI GDGCHC 1 cut(s) 773
SfaNI GCATC 2 cut(s) 85, 682
SfcI CTRYAG 1 cut(s) 223
SfoI GGCGCC 1 cut(s) 333
SfuI TTCGAA 1 cut(s) 234
SinI GGWCC 1 cut(s) 183
SmaI CCCGGG 1 cut(s) 667
SmiMI CAYNNNNRTG 1 cut(s) 494
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
Sse9I AATT 5 cut(s) 26, 155, 163, 626, 715
SsiI CCGC 5 cut(s) 5, 32, 181, 186, 697
SspDI GGCGCC 1 cut(s) 331
StyD4I CCNGG 4 cut(s) 117, 364, 664, 665
StyI CCWWGG 2 cut(s) 90, 327
TaaI ACNGT 5 cut(s) 178, 286, 300, 360, 791
TaqI TCGA 8 cut(s) 24, 64, 129, 171, 234, 302, 320, 511
TaqII GACCGA 1 cut(s) 155
TasI AATT 5 cut(s) 26, 155, 163, 626, 715
TfiI GAWTC 4 cut(s) 143, 500, 649, 796
TscAI CASTG 1 cut(s) 727
TseFI GTSAC 1 cut(s) 252
TseI GCWGC 1 cut(s) 192
Tsp45I GTSAC 1 cut(s) 252
TspDTI ATGAA 2 cut(s) 759, 798
TspGWI ACGGA 1 cut(s) 254
TspMI CCCGGG 1 cut(s) 665
TspRI CASTG 1 cut(s) 727
VneI GTGCAC 1 cut(s) 769
VpaK11BI GGWCC 1 cut(s) 183
XapI RAATTY 1 cut(s) 155
XceI RCATGY 1 cut(s) 79
XmaI CCCGGG 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.