Rh1BG047800

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0012042
Physical Location & Seq
Reverse (-)
6592550 .. 6595503
2954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG047800.1

Sequence Viewer

Length: 822 bp
ATGGCGGATCTCGAAAACAGGGTTGATTCGTCGTCAAAGGCCAAGTCCAAGACCTCCTCCCCAAACCGGGGGTTGTTCTTCAATCGTTCTATGACCATGTACGCGGAGCCCAAGAAGGCCCAACACGCGCTCGATCACGCAGGGTCGTTCAAGAAATTCTACAATTCCATGGAAACGGTGCGTTCCGCCAGCAGTTCTTTTAAAGGGAAGGTGAAGAAGCTCTGCAGCTTCTTCGAAACCGACAAGCTCCCCACACGAAACGTTTCGGACGAATCGCAGTCCCTGGTGAAGCTCAGGCCGTCGAAATCGATGGCCAATTCGAAGTCTCTGGCGCCGGATTTTCGGGTGTTGTCGATTAGGCTGCCGGGTACGGATGACAGGATTGTAATGTACCTCACCAGCTTGCGCGGGATTCGAAGGACGTATGAGGATTGTTATGCTGTGAAGATGATATTCAGAGGGTTTGGGGTTTGGGTTGATGAGAGGGATATTTCGATGGATTCGGATTATAGGAAAGAGTTGCAGAGCGTTTTGGGAGCCAAGAATGTGAGCTTGCCGCAGGTTTTTATAAGGGGGAAATATGTGGGAGGTGCTGAGGTGATCAAGCAGCTGTTTGAGACGGGAGAATTGGCAAAGATATTGCAAGGGCTTCCCATTCGGAAACCCGGGTCTGTGTGTGGGGGTTGTGGGGATGCGAGGTTCGTGCCGTGCTTGAATTGCAGTGGGAGCAGGAAGGTGTTTGATGAGGATGAAGAGACGCTCAAGAGGTGCATCGAGTGCAATGAAAATGGTTTGATTCGGTGTCCTAATTGCTGTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

273

Amino Acids

30.53

Weight (kDa)

9.27

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 129 - 195 6.7e-13 Glutaredoxin
GRXCR1-2_C PF23733 226 - 272 2.2e-19 GRXCR1/2, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012042)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13810
fragaria_vesca FvH4_3g03100 FvH4_7g02860
malus_domestica MD02G1289200.v1.1 MD07G1038000.v1.1
prunus_persica Prupe.2G033200_v2.0.a1
pyrus_communis pycom07g02630
rosa_chinensis RchiOBHm_Chr1g0323791
rosa_laevigata RLG00000030296
rosa_multiflora Rmu_co8205106.1_g000001 Rmu_sc0000252.1_g000031 Rmu_sc0002634.1_g000015
rosa_roxburghii Rroxscaffold_4G00326410
rosa_rugosa Rorug01G0039600
rosa_samantha Rh1AG056800 Rh1BG047800 Rh1CG058100 Rh1DG061900
rosa_wichuraiana Rw1G004840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
Acc36I ACCTGC 1 cut(s) 550
AccB1I GGYRCC 1 cut(s) 331
AccII CGCG 3 cut(s) 104, 128, 408
AciI CCGC 5 cut(s) 5, 104, 186, 408, 557
AclI AACGTT 1 cut(s) 261
AclWI GGATC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 332
AfaI GTAC 3 cut(s) 101, 370, 392
AfiI CCNNNNNNNGG 3 cut(s) 66, 67, 68
AgsI TTSAA 3 cut(s) 82, 151, 715
AjnI CCWGG 1 cut(s) 282
AloI GAACNNNNNNTCC 2 cut(s) 683, 715
AluBI AGCT 7 cut(s) 220, 228, 247, 292, 402, 552, 610
AluI AGCT 7 cut(s) 220, 228, 247, 292, 402, 552, 610
Alw26I GTCTC 3 cut(s) 330, 611, 749
AlwI GGATC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 283
Ama87I CYCGRG 1 cut(s) 665
AoxI GGCC 4 cut(s) 39, 117, 296, 312
ApeKI GCWGC 3 cut(s) 225, 361, 607
ApoI RAATTY 1 cut(s) 155
ArsI GACNNNNNNTTYG 2 cut(s) 29, 61
Asp700I GAANNNNTTC 1 cut(s) 262
AspLEI GCGC 3 cut(s) 130, 334, 408
AspS9I GGNCC 1 cut(s) 118
AsuC2I CCSGG 4 cut(s) 68, 366, 666, 667
AsuHPI GGTGA 4 cut(s) 223, 298, 388, 610
AsuII TTCGAA 3 cut(s) 234, 320, 415
AvaI CYCGRG 1 cut(s) 665
BalI TGGCCA 1 cut(s) 314
BanI GGYRCC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 111
BbvCI CCTCAGC 1 cut(s) 594
BbvI GCAGC 3 cut(s) 237, 348, 619
BccI CCATC 2 cut(s) 304, 490
BceAI ACGGC 2 cut(s) 283, 691
BcgI CGANNNNNNTGC 6 cut(s) 214, 248, 343, 377, 685, 719
BciT130I CCWGG 1 cut(s) 284
BclI TGATCA 1 cut(s) 600
BcnI CCSGG 4 cut(s) 68, 366, 666, 667
BcoDI GTCTC 3 cut(s) 330, 611, 749
BfmI CTRYAG 1 cut(s) 223
BfoI RGCGCY 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 550
BisI GCNGC 4 cut(s) 226, 362, 557, 608
BlsI GCNGC 4 cut(s) 227, 363, 558, 609
Bme1390I CCNGG 5 cut(s) 68, 284, 366, 666, 667
BmeT110I CYCGRG 1 cut(s) 665
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 3 cut(s) 108, 333, 538
BmrFI CCNGG 5 cut(s) 68, 284, 366, 666, 667
BmsI GCATC 2 cut(s) 682, 780
Bpu10I CCTNAGC 2 cut(s) 293, 594
Bpu14I TTCGAA 3 cut(s) 234, 320, 415
BpuEI CTTGAG 1 cut(s) 746
BpuMI CCSGG 4 cut(s) 68, 366, 666, 667
Bsa29I ATCGAT 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 332
BsaJI CCNNGG 4 cut(s) 67, 168, 282, 665
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 67, 68
Bse3DI GCAATG 1 cut(s) 787
BseBI CCWGG 1 cut(s) 284
BseCI ATCGAT 1 cut(s) 308
BseDI CCNNGG 4 cut(s) 67, 168, 282, 665
BseGI GGATG 3 cut(s) 379, 697, 754
BseLI CCNNNNNNNGG 3 cut(s) 66, 67, 68
BseMI GCAATG 1 cut(s) 787
BseMII CTCAG 2 cut(s) 307, 585
BseRI GAGGAG 1 cut(s) 46
BseXI GCAGC 3 cut(s) 237, 348, 619
Bsh1236I CGCG 3 cut(s) 104, 128, 408
BshFI GGCC 4 cut(s) 41, 119, 298, 314
BshNI GGYRCC 1 cut(s) 331
BshVI ATCGAT 1 cut(s) 308
BsiHKCI CYCGRG 1 cut(s) 665
BsiSI CCGG 4 cut(s) 67, 335, 365, 666
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 3 cut(s) 66, 67, 68
BsmAI GTCTC 3 cut(s) 330, 611, 749
BsmBI CGTCTC 2 cut(s) 611, 749
BsmFI GGGAC 1 cut(s) 265
BsnI GGCC 4 cut(s) 41, 119, 298, 314
BsoBI CYCGRG 1 cut(s) 665
Bsp119I TTCGAA 3 cut(s) 234, 320, 415
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 3 cut(s) 7, 133, 600
Bsp19I CCATGG 1 cut(s) 168
BspACI CCGC 5 cut(s) 5, 104, 186, 408, 557
BspANI GGCC 4 cut(s) 41, 119, 298, 314
BspCNI CTCAG 2 cut(s) 306, 586
BspDI ATCGAT 1 cut(s) 308
BspFNI CGCG 3 cut(s) 104, 128, 408
BspLI GGNNCC 3 cut(s) 108, 333, 538
BspMAI CTGCAG 1 cut(s) 227
BspMI ACCTGC 1 cut(s) 550
BspPI GGATC 1 cut(s) 15
BspT104I TTCGAA 3 cut(s) 234, 320, 415
BspT107I GGYRCC 1 cut(s) 331
BsrDI GCAATG 1 cut(s) 787
BssECI CCNNGG 4 cut(s) 67, 168, 282, 665
BssMI GATC 3 cut(s) 7, 133, 600
BssNI GRCGYC 1 cut(s) 332
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 747
BstACI GRCGYC 1 cut(s) 332
BstAPI GCANNNNNTGC 1 cut(s) 777
BstBI TTCGAA 3 cut(s) 234, 320, 415
BstC8I GCNNGC 3 cut(s) 190, 404, 554
BstDEI CTNAG 2 cut(s) 293, 594
BstDSI CCRYGG 1 cut(s) 168
BstF5I GGATG 3 cut(s) 379, 697, 754
BstFNI CGCG 3 cut(s) 104, 128, 408
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 3 cut(s) 130, 334, 408
BstKTI GATC 3 cut(s) 10, 136, 603
BstMAI GTCTC 3 cut(s) 330, 611, 749
BstMBI GATC 3 cut(s) 7, 133, 600
BstMWI GCNNNNNNNGC 4 cut(s) 125, 717, 726, 777
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 5 cut(s) 66, 282, 364, 664, 665
BstSFI CTRYAG 1 cut(s) 223
BstUI CGCG 3 cut(s) 104, 128, 408
BstV1I GCAGC 3 cut(s) 237, 348, 619
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
Bsu15I ATCGAT 1 cut(s) 308
BsuRI GGCC 4 cut(s) 41, 119, 298, 314
BsuTUI ATCGAT 1 cut(s) 308
BtgI CCRYGG 1 cut(s) 168
BtsCI GGATG 3 cut(s) 379, 697, 754
BtsI GCAGTG 1 cut(s) 727
BtsIMutI CAGTG 1 cut(s) 727
BveI ACCTGC 1 cut(s) 550
Cac8I GCNNGC 3 cut(s) 190, 404, 554
CaiI CAGNNNCTG 1 cut(s) 283
CfoI GCGC 3 cut(s) 130, 334, 408
Cfr13I GGNCC 1 cut(s) 118
Cfr9I CCCGGG 1 cut(s) 665
ClaI ATCGAT 1 cut(s) 308
CseI GACGC 1 cut(s) 766
Csp6I GTAC 3 cut(s) 100, 369, 391
CviAII CATG 2 cut(s) 97, 169
CviQI GTAC 3 cut(s) 100, 369, 391
DdeI CTNAG 2 cut(s) 293, 594
DinI GGCGCC 1 cut(s) 333
DpnI GATC 3 cut(s) 9, 135, 602
DpnII GATC 3 cut(s) 7, 133, 600
DraI TTTAAA 1 cut(s) 202
EaeI YGGCCR 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 747
EciI GGCGGA 2 cut(s) 20, 175
Eco130I CCWWGG 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 111
Eco88I CYCGRG 1 cut(s) 665
EcoRII CCWGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 168
EcoT38I GRGCYC 1 cut(s) 111
EgeI GGCGCC 1 cut(s) 333
EheI GGCGCC 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 168
Esp3I CGTCTC 2 cut(s) 611, 749
FaeI CATG 2 cut(s) 100, 172
FaiI YATR 8 cut(s) 92, 98, 170, 426, 438, 510, 569, 582
FaqI GGGAC 1 cut(s) 265
FatI CATG 2 cut(s) 96, 168
FauI CCCGC 1 cut(s) 401
FbaI TGATCA 1 cut(s) 600
Fnu4HI GCNGC 4 cut(s) 226, 362, 557, 608
FokI GGATG 3 cut(s) 386, 704, 761
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 4 cut(s) 226, 362, 557, 608
GlaI GCGC 3 cut(s) 129, 333, 407
GluI GCNGC 4 cut(s) 226, 362, 557, 608
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 4 cut(s) 41, 119, 298, 314
HapII CCGG 4 cut(s) 67, 335, 365, 666
HgaI GACGC 1 cut(s) 766
HhaI GCGC 3 cut(s) 130, 334, 408
Hin1I GRCGYC 1 cut(s) 332
Hin1II CATG 2 cut(s) 100, 172
Hin6I GCGC 3 cut(s) 128, 332, 406
HinP1I GCGC 3 cut(s) 128, 332, 406
HinfI GANTC 5 cut(s) 26, 272, 412, 500, 796
HpaII CCGG 4 cut(s) 67, 335, 365, 666
HphI GGTGA 4 cut(s) 223, 298, 388, 610
Hpy188I TCNGA 4 cut(s) 268, 458, 505, 660
Hpy188III TCNNGA 3 cut(s) 11, 151, 763
Hpy99I CGWCG 2 cut(s) 34, 304
HpyAV CCTTC 4 cut(s) 109, 202, 411, 727
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4IV ACGT 2 cut(s) 261, 422
HpyCH4V TGCA 6 cut(s) 225, 523, 643, 720, 771, 780
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 717, 726, 777
HpyF3I CTNAG 2 cut(s) 293, 594
HpySE526I ACGT 2 cut(s) 261, 422
Hsp92I GRCGYC 1 cut(s) 332
Hsp92II CATG 2 cut(s) 100, 172
HspAI GCGC 3 cut(s) 128, 332, 406
KasI GGCGCC 1 cut(s) 331
Ksp22I TGATCA 1 cut(s) 600
Kzo9I GATC 3 cut(s) 7, 133, 600
LmnI GCTCC 4 cut(s) 106, 252, 536, 726
Lsp1109I GCAGC 3 cut(s) 237, 348, 619
LweI GCATC 2 cut(s) 682, 780
MaeII ACGT 2 cut(s) 261, 422
MalI GATC 3 cut(s) 9, 135, 602
MboI GATC 3 cut(s) 7, 133, 600
MboII GAAGA 5 cut(s) 70, 223, 226, 457, 764
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 111
MlsI TGGCCA 1 cut(s) 314
MluCI AATT 6 cut(s) 155, 163, 316, 626, 715, 808
MluNI TGGCCA 1 cut(s) 314
Mly113I GGCGCC 1 cut(s) 332
Mox20I TGGCCA 1 cut(s) 314
MroXI GAANNNNTTC 1 cut(s) 262
MscI TGGCCA 1 cut(s) 314
MseI TTAA 2 cut(s) 201, 820
Msp20I TGGCCA 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 610
MspI CCGG 4 cut(s) 67, 335, 365, 666
MspR9I CCNGG 5 cut(s) 68, 284, 366, 666, 667
MvaI CCWGG 1 cut(s) 284
MvnI CGCG 3 cut(s) 104, 128, 408
MwoI GCNNNNNNNGC 4 cut(s) 125, 717, 726, 777
NarI GGCGCC 1 cut(s) 332
NciI CCSGG 4 cut(s) 68, 366, 666, 667
NcoI CCATGG 1 cut(s) 168
NdeII GATC 3 cut(s) 7, 133, 600
NlaIII CATG 2 cut(s) 100, 172
NlaIV GGNNCC 3 cut(s) 108, 333, 538
NspV TTCGAA 3 cut(s) 234, 320, 415
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 262
PfeI GAWTC 5 cut(s) 26, 272, 412, 500, 796
PkrI GCNGC 4 cut(s) 227, 363, 558, 609
PluTI GGCGCC 1 cut(s) 335
PsiI TTATAA 1 cut(s) 569
Psp1406I AACGTT 1 cut(s) 261
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 3 cut(s) 108, 333, 538
PspPI GGNCC 1 cut(s) 118
PstI CTGCAG 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 283
PsuI RGATCY 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 610
RsaI GTAC 3 cut(s) 101, 370, 392
RsaNI GTAC 3 cut(s) 100, 369, 391
SaqAI TTAA 2 cut(s) 201, 820
SatI GCNGC 4 cut(s) 226, 362, 557, 608
Sau3AI GATC 3 cut(s) 7, 133, 600
Sau96I GGNCC 1 cut(s) 118
ScrFI CCNGG 5 cut(s) 68, 284, 366, 666, 667
SduI GDGCHC 1 cut(s) 111
SfaNI GCATC 2 cut(s) 682, 780
SfcI CTRYAG 1 cut(s) 223
SfoI GGCGCC 1 cut(s) 333
SfuI TTCGAA 3 cut(s) 234, 320, 415
SmaI CCCGGG 1 cut(s) 667
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
Sse9I AATT 6 cut(s) 155, 163, 316, 626, 715, 808
SsiI CCGC 5 cut(s) 5, 104, 186, 408, 557
SspDI GGCGCC 1 cut(s) 331
StyD4I CCNGG 5 cut(s) 66, 282, 364, 664, 665
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 178
TaiI ACGT 2 cut(s) 264, 425
TasI AATT 6 cut(s) 155, 163, 316, 626, 715, 808
TauI GCSGC 1 cut(s) 559
TfiI GAWTC 5 cut(s) 26, 272, 412, 500, 796
Tru1I TTAA 2 cut(s) 201, 820
Tru9I TTAA 2 cut(s) 201, 820
TscAI CASTG 1 cut(s) 727
TseI GCWGC 3 cut(s) 225, 361, 607
TspDTI ATGAA 2 cut(s) 765, 798
TspGWI ACGGA 1 cut(s) 386
TspMI CCCGGG 1 cut(s) 665
TspRI CASTG 1 cut(s) 727
XapI RAATTY 1 cut(s) 155
XmaI CCCGGG 1 cut(s) 665
XmnI GAANNNNTTC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.