AT5G14220

Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
4582629 .. 4587653
5025 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14220.1

Sequence Viewer

Length: 1527 bp
ATGGCGTCTGGAGCAGTAGCAGATCATCAAATTGAAGCGGTTTCAGGAAAAAGAGTCGCAGTCGTAGGTGCAGGTGTAAGTGGACTTGCGGCGGCTTACAAGTTGAAATCGAGGGGTTTGAATGTGACTGTGTTTGAAGCTGATGGAAGAGTAGGTGGGAAGTTGAGAAGTGTTATGCAAAATGGTTTGATTTGGGATGAAGGAGCAAACACCATGACTGAGGCTGAGCCAGAAGTTGGGAGTTTACTTGATGATCTTGGGCTTCGTGAGAAACAACAATTTCCAATTTCACAGAAAAAGCGGTATATTGTGCGGAATGGTGTACCTGTGATGCTACCTACCAATCCCATAGAGCTGGTCACAAGTAGTGTGCTCTCTACCCAATCTAAGTTTCAAATCTTGTTGGAACCATTTTTATGGAAGAAAAAGTCCTCAAAAGTCTCAGATGCATCTGCTGAAGAAAGTGTAAGCGAGTTCTTTCAACGCCATTTTGGACAAGAGGTTGTTGACTATCTCATCGACCCTTTTGTTGGTGGAACAAGTGCTGCGGACCCTGATTCCCTTTCAATGAAGCATTCTTTCCCAGATCTCTGGAATGTAGAGAAAAGTTTTGGCTCTATTATAGTCGGTGCAATCAGAACAAAGTTTGCTGCTAAAGGTGGTAAAAGTAGAGACACAAAGAGTTCTCCTGGCACAAAAAAGGGTTCGCGTGGGTCATTCTCTTTTAAGGGGGGAATGCAGATTCTTCCTGATACGTTGTGCAAAAGTCTCTCACATGATGAGATCAATTTAGACTCCAAGGTACTCTCTTTGTCTTACAATTCTGGATCAAGACAGGAGAACTGGTCATTATCTTGTGTTTCGCATAATGAAACGCAGAGACAAAACCCCCATTATGATGCTGTAATTATGACGGCTCCTCTGTGCAATGTGAAGGAGATGAAGGTTATGAAAGGAGGACAACCCTTTCAGCTAAACTTTCTCCCCGAGATTAATTACATGCCCCTCTCGGTTTTAATCACCACATTCACAAAGGAGAAAGTAAAGAGACCTCTTGAAGGCTTTGGGGTACTCATTCCATCTAAGGAGCAAAAGCATGGTTTCAAAACTCTAGGTACACTTTTTTCATCAATGATGTTTCCAGATCGTTCCCCTAGTGACGTTCATCTATATACAACTTTTATTGGTGGGAGTAGGAACCAGGAACTAGCCAAAGCTTCCACTGACGAATTAAAACAAGTTGTGACTTCTGACCTTCAGCGACTGTTGGGGGTTGAAGGTGAACCCGTGTCTGTCAACCATTACTATTGGAGGAAAGCATTCCCGTTGTATGACAGCAGCTATGACTCAGTCATGGAAGCAATTGACAAGATGGAGAATGATCTACCTGGGTTCTTCTATGCAGGTAATCATCGAGGGGGGCTCTCTGTTGGGAAATCAATAGCATCAGGTTGCAAAGCAGCTGACCTTGTGATCTCATACCTGGAGTCTTGCTCAAATGACAAGAAACCAAATGACAGCTTATAA

Protein Analysis

508

Amino Acids

55.63

Weight (kDa)

8.35

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 18 - 52 4.9e-08 FAD dependent oxidoreductase
FAD_binding_2 PF00890 19 - 65 2e-06 FAD binding domain
FAD_oxidored PF12831 19 - 86 6.3e-06 FAD dependent oxidoreductase
NAD_binding_8 PF13450 21 - 86 5.1e-14 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 26 - 492 4.5e-79 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1525
AarI CACCTGC 1 cut(s) 62
Acc36I ACCTGC 2 cut(s) 62, 1394
AccB7I CCANNNNNTGG 1 cut(s) 236
AccII CGCG 1 cut(s) 709
AciI CCGC 6 cut(s) 38, 89, 92, 301, 313, 548
AclWI GGATC 1 cut(s) 835
AcuI CTGAAG 2 cut(s) 477, 1241
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 324, 804, 1071, 1117
AfiI CCNNNNNNNGG 3 cut(s) 236, 530, 1058
AjnI CCWGG 4 cut(s) 688, 1200, 1387, 1482
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AluBI AGCT 7 cut(s) 140, 355, 973, 1217, 1341, 1463, 1521
AluI AGCT 7 cut(s) 140, 355, 973, 1217, 1341, 1463, 1521
Alw21I GWGCWC 1 cut(s) 375
Alw26I GTCTC 5 cut(s) 445, 666, 773, 874, 1042
AlwI GGATC 1 cut(s) 835
AlwNI CAGNNNCTG 1 cut(s) 1264
Ama87I CYCGRG 1 cut(s) 986
ApeKI GCWGC 4 cut(s) 545, 650, 1338, 1460
AseI ATTAAT 1 cut(s) 993
Asp700I GAANNNNTTC 1 cut(s) 1319
AspS9I GGNCC 1 cut(s) 550
AsuHPI GGTGA 2 cut(s) 1012, 1292
AvaI CYCGRG 1 cut(s) 986
AvaII GGWCC 1 cut(s) 550
BanII GRGCYC 1 cut(s) 1425
Bbv12I GWGCWC 1 cut(s) 375
BbvI GCAGC 4 cut(s) 532, 637, 1350, 1472
BccI CCATC 3 cut(s) 137, 1087, 1366
BceAI ACGGC 1 cut(s) 930
BciT130I CCWGG 4 cut(s) 690, 1202, 1389, 1484
BcoDI GTCTC 5 cut(s) 445, 666, 773, 874, 1042
BfaI CTAG 3 cut(s) 1112, 1155, 1208
BfuAI ACCTGC 2 cut(s) 62, 1394
BglII AGATCT 1 cut(s) 586
BisI GCNGC 6 cut(s) 90, 93, 546, 651, 1339, 1461
BlpI GCTNAGC 1 cut(s) 225
BlsI GCNGC 6 cut(s) 91, 94, 547, 652, 1340, 1462
Bme1390I CCNGG 4 cut(s) 690, 1202, 1389, 1484
Bme18I GGWCC 1 cut(s) 550
BmeT110I CYCGRG 1 cut(s) 986
BmgT120I GGNCC 1 cut(s) 550
BmiI GGNNCC 4 cut(s) 408, 552, 918, 1199
BmrFI CCNGG 4 cut(s) 690, 1202, 1389, 1484
BmsI GCATC 5 cut(s) 321, 436, 458, 889, 1454
BplI GAGNNNNNCTC 4 cut(s) 1407, 1439, 1478, 1510
BpmI CTGGAG 2 cut(s) 30, 1505
Bpu1102I GCTNAGC 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 1042
BsaJI CCNNGG 2 cut(s) 798, 1388
BsaXI ACNNNNNCTCC 2 cut(s) 830, 860
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 530, 1058
Bse1I ACTGG 1 cut(s) 848
Bse3DI GCAATG 1 cut(s) 934
BseBI CCWGG 4 cut(s) 690, 1202, 1389, 1484
BseDI CCNNGG 2 cut(s) 798, 1388
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 3 cut(s) 236, 530, 1058
BseMI GCAATG 1 cut(s) 934
BseMII CTCAG 4 cut(s) 210, 216, 456, 1362
BseNI ACTGG 1 cut(s) 848
BseRI GAGGAG 1 cut(s) 909
BseXI GCAGC 4 cut(s) 532, 637, 1350, 1472
BsgI GTGCAG 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 709
BsiHKAI GWGCWC 1 cut(s) 375
BsiHKCI CYCGRG 1 cut(s) 986
BslI CCNNNNNNNGG 3 cut(s) 236, 530, 1058
BsmAI GTCTC 5 cut(s) 445, 666, 773, 874, 1042
BsmI GAATGC 3 cut(s) 574, 741, 1319
Bso31I GGTCTC 1 cut(s) 1042
BsoBI CYCGRG 1 cut(s) 986
Bsp1286I GDGCHC 2 cut(s) 375, 1425
Bsp143I GATC 8 cut(s) 22, 253, 586, 783, 827, 1144, 1381, 1473
Bsp1720I GCTNAGC 1 cut(s) 225
BspACI CCGC 6 cut(s) 38, 89, 92, 301, 313, 548
BspCNI CTCAG 4 cut(s) 211, 217, 455, 1361
BspFNI CGCG 1 cut(s) 709
BspLI GGNNCC 4 cut(s) 408, 552, 918, 1199
BspMI ACCTGC 2 cut(s) 62, 1394
BspPI GGATC 1 cut(s) 835
BspTNI GGTCTC 1 cut(s) 1042
BsrDI GCAATG 1 cut(s) 934
BsrI ACTGG 1 cut(s) 848
BssECI CCNNGG 2 cut(s) 798, 1388
BssMI GATC 8 cut(s) 22, 253, 586, 783, 827, 1144, 1381, 1473
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 798
Bst2UI CCWGG 4 cut(s) 690, 1202, 1389, 1484
Bst4CI ACNGT 2 cut(s) 130, 1266
Bst6I CTCTTC 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 6 cut(s) 219, 225, 387, 442, 1083, 1348
BstENI CCTNNNNNAGG 1 cut(s) 1056
BstF5I GGATG 1 cut(s) 202
BstFNI CGCG 1 cut(s) 709
BstKTI GATC 8 cut(s) 25, 256, 589, 786, 830, 1147, 1384, 1476
BstMAI GTCTC 5 cut(s) 445, 666, 773, 874, 1042
BstMBI GATC 8 cut(s) 22, 253, 586, 783, 827, 1144, 1381, 1473
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 4 cut(s) 690, 1202, 1389, 1484
BstNSI RCATGY 1 cut(s) 1003
BstSCI CCNGG 4 cut(s) 688, 1200, 1387, 1482
BstUI CGCG 1 cut(s) 709
BstV1I GCAGC 4 cut(s) 532, 637, 1350, 1472
BstX2I RGATCY 1 cut(s) 586
BstXI CCANNNNNNTGG 3 cut(s) 355, 417, 591
BstYI RGATCY 1 cut(s) 586
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 1221
BveI ACCTGC 2 cut(s) 62, 1394
CaiI CAGNNNCTG 1 cut(s) 1264
Cfr13I GGNCC 1 cut(s) 550
Csp6I GTAC 4 cut(s) 323, 803, 1070, 1116
CviAII CATG 5 cut(s) 214, 776, 1000, 1097, 1354
CviQI GTAC 4 cut(s) 323, 803, 1070, 1116
DdeI CTNAG 6 cut(s) 219, 225, 387, 442, 1083, 1348
DpnI GATC 8 cut(s) 24, 255, 588, 785, 829, 1146, 1383, 1475
DpnII GATC 8 cut(s) 22, 253, 586, 783, 827, 1144, 1381, 1473
Eam1104I CTCTTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 798
Eco24I GRGCYC 1 cut(s) 1425
Eco31I GGTCTC 1 cut(s) 1042
Eco47I GGWCC 1 cut(s) 550
Eco57I CTGAAG 2 cut(s) 477, 1241
Eco88I CYCGRG 1 cut(s) 986
EcoNI CCTNNNNNAGG 1 cut(s) 1056
EcoRII CCWGG 4 cut(s) 688, 1200, 1387, 1482
EcoT14I CCWWGG 1 cut(s) 798
EcoT22I ATGCAT 1 cut(s) 451
EcoT38I GRGCYC 1 cut(s) 1425
ErhI CCWWGG 1 cut(s) 798
FaeI CATG 5 cut(s) 217, 779, 1003, 1100, 1357
FatI CATG 5 cut(s) 213, 775, 999, 1096, 1353
Fnu4HI GCNGC 6 cut(s) 90, 93, 546, 651, 1339, 1461
FokI GGATG 1 cut(s) 209
FriOI GRGCYC 1 cut(s) 1425
Fsp4HI GCNGC 6 cut(s) 90, 93, 546, 651, 1339, 1461
FspBI CTAG 3 cut(s) 1112, 1155, 1208
GluI GCNGC 6 cut(s) 90, 93, 546, 651, 1339, 1461
GsuI CTGGAG 2 cut(s) 30, 1505
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 217, 779, 1003, 1100, 1357
HincII GTYRAC 2 cut(s) 508, 1297
HindII GTYRAC 2 cut(s) 508, 1297
HindIII AAGCTT 1 cut(s) 1215
HinfI GANTC 6 cut(s) 54, 557, 742, 794, 1346, 1487
HphI GGTGA 2 cut(s) 1012, 1292
Hpy166II GTNNAC 7 cut(s) 83, 245, 323, 508, 1118, 1283, 1297
Hpy188I TCNGA 3 cut(s) 445, 638, 1252
Hpy188III TCNNGA 9 cut(s) 9, 45, 266, 592, 749, 825, 831, 1055, 1142
Hpy8I GTNNAC 7 cut(s) 83, 245, 323, 508, 1118, 1283, 1297
HpyAV CCTTC 6 cut(s) 194, 928, 937, 1052, 1265, 1271
HpyCH4III ACNGT 2 cut(s) 130, 1266
HpyCH4IV ACGT 2 cut(s) 755, 1161
HpyCH4V TGCA 9 cut(s) 71, 178, 449, 632, 739, 762, 927, 1403, 1455
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 6 cut(s) 219, 225, 387, 442, 1083, 1348
HpySE526I ACGT 2 cut(s) 755, 1161
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 217, 779, 1003, 1100, 1357
Kzo9I GATC 8 cut(s) 22, 253, 586, 783, 827, 1144, 1381, 1473
LmnI GCTCC 4 cut(s) 11, 203, 922, 1087
Lsp1109I GCAGC 4 cut(s) 532, 637, 1350, 1472
LweI GCATC 5 cut(s) 321, 436, 458, 889, 1454
MaeI CTAG 3 cut(s) 1112, 1155, 1208
MaeII ACGT 2 cut(s) 755, 1161
MaeIII GTNAC 4 cut(s) 124, 358, 1157, 1243
MalI GATC 8 cut(s) 24, 255, 588, 785, 829, 1146, 1383, 1475
MboI GATC 8 cut(s) 22, 253, 586, 783, 827, 1144, 1381, 1473
MboII GAAGA 5 cut(s) 159, 433, 470, 737, 1387
MfeI CAATTG 1 cut(s) 1362
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 2 cut(s) 375, 1425
MluCI AATT 9 cut(s) 30, 278, 285, 787, 820, 906, 994, 1229, 1362
MlyI GAGTC 4 cut(s) 63, 788, 1340, 1496
MmeI TCCRAC 1 cut(s) 384
Mph1103I ATGCAT 1 cut(s) 451
MroXI GAANNNNTTC 1 cut(s) 1319
MseI TTAA 4 cut(s) 726, 993, 1016, 1232
MslI CAYNNNNRTG 2 cut(s) 415, 897
MspA1I CMGCKG 1 cut(s) 1463
MspR9I CCNGG 4 cut(s) 690, 1202, 1389, 1484
MunI CAATTG 1 cut(s) 1362
Mva1269I GAATGC 3 cut(s) 574, 741, 1319
MvaI CCWGG 4 cut(s) 690, 1202, 1389, 1484
MvnI CGCG 1 cut(s) 709
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 8 cut(s) 22, 253, 586, 783, 827, 1144, 1381, 1473
NlaIII CATG 5 cut(s) 217, 779, 1003, 1100, 1357
NlaIV GGNNCC 4 cut(s) 408, 552, 918, 1199
NmuCI GTSAC 4 cut(s) 124, 358, 1157, 1243
NsiI ATGCAT 1 cut(s) 451
NspI RCATGY 1 cut(s) 1003
PaqCI CACCTGC 1 cut(s) 62
PctI GAATGC 3 cut(s) 574, 741, 1319
PdmI GAANNNNTTC 1 cut(s) 1319
PfeI GAWTC 2 cut(s) 557, 742
PflFI GACNNNGTC 1 cut(s) 1349
PflMI CCANNNNNTGG 1 cut(s) 236
PkrI GCNGC 6 cut(s) 91, 94, 547, 652, 1340, 1462
PleI GAGTC 4 cut(s) 62, 788, 1340, 1495
PpsI GAGTC 4 cut(s) 62, 788, 1340, 1495
PshBI ATTAAT 1 cut(s) 993
PsiI TTATAA 1 cut(s) 1525
Psp6I CCWGG 4 cut(s) 688, 1200, 1387, 1482
PspGI CCWGG 4 cut(s) 688, 1200, 1387, 1482
PspN4I GGNNCC 4 cut(s) 408, 552, 918, 1199
PspPI GGNCC 1 cut(s) 550
PstNI CAGNNNCTG 1 cut(s) 1264
PsuI RGATCY 1 cut(s) 586
PsyI GACNNNGTC 1 cut(s) 1349
PvuII CAGCTG 1 cut(s) 1463
RsaI GTAC 4 cut(s) 324, 804, 1071, 1117
RsaNI GTAC 4 cut(s) 323, 803, 1070, 1116
RseI CAYNNNNRTG 2 cut(s) 415, 897
SaqAI TTAA 4 cut(s) 726, 993, 1016, 1232
SatI GCNGC 6 cut(s) 90, 93, 546, 651, 1339, 1461
Sau3AI GATC 8 cut(s) 22, 253, 586, 783, 827, 1144, 1381, 1473
Sau96I GGNCC 1 cut(s) 550
SchI GAGTC 4 cut(s) 63, 788, 1340, 1496
ScrFI CCNGG 4 cut(s) 690, 1202, 1389, 1484
SduI GDGCHC 2 cut(s) 375, 1425
SfaNI GCATC 5 cut(s) 321, 436, 458, 889, 1454
SinI GGWCC 1 cut(s) 550
SmiMI CAYNNNNRTG 2 cut(s) 415, 897
Sse9I AATT 9 cut(s) 30, 278, 285, 787, 820, 906, 994, 1229, 1362
SsiI CCGC 6 cut(s) 38, 89, 92, 301, 313, 548
SspMI CTAG 3 cut(s) 1112, 1155, 1208
StyD4I CCNGG 4 cut(s) 688, 1200, 1387, 1482
StyI CCWWGG 1 cut(s) 798
TaaI ACNGT 2 cut(s) 130, 1266
TaiI ACGT 2 cut(s) 758, 1164
TaqI TCGA 3 cut(s) 110, 519, 1414
TasI AATT 9 cut(s) 30, 278, 285, 787, 820, 906, 994, 1229, 1362
TauI GCSGC 2 cut(s) 92, 95
TfiI GAWTC 2 cut(s) 557, 742
Tru1I TTAA 4 cut(s) 726, 993, 1016, 1232
Tru9I TTAA 4 cut(s) 726, 993, 1016, 1232
TscAI CASTG 1 cut(s) 1228
TseFI GTSAC 4 cut(s) 124, 358, 1157, 1243
TseI GCWGC 4 cut(s) 545, 650, 1338, 1460
Tsp45I GTSAC 4 cut(s) 124, 358, 1157, 1243
TspDTI ATGAA 7 cut(s) 213, 584, 885, 956, 965, 1116, 1154
TspRI CASTG 1 cut(s) 1228
Tth111I GACNNNGTC 1 cut(s) 1349
Van91I CCANNNNNTGG 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 550
VspI ATTAAT 1 cut(s) 993
XagI CCTNNNNNAGG 1 cut(s) 1056
XceI RCATGY 1 cut(s) 1003
XmnI GAANNNNTTC 1 cut(s) 1319
XspI CTAG 3 cut(s) 1112, 1155, 1208
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.