Rmu_sc0009766.1_g000003

Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009766.1
Physical Location & Seq
Forward (+)
18940 .. 24707
5768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009766.1_g000003.1.cds

Sequence Viewer

Length: 1791 bp
atggttgatgacgtcagggctagaggccatatgaagagggatgaggatgttggcccagtagtcggctcatctcaggtcggagatggaggcaaagatttggtcgaggaagggtttgaggtgagtgagatcggtgagtcggcactaggcaagttggtagttgaaggaggacttggagatggagaagcaggagaggaaggcggaggtggactcgaaggaaggggaggggtcggaggagttggcggcagtgagcttcagagcacagcgcagatggcctcgccttcccctggagataagcacagctctgtgaaaagagtggctgttgttggcgctggtgttagtgggcttgctgcggcctacaagttgaaatcacatggtttccacgttacggtactcgaagccgagggaagagctggagggaagttgagaagtgtgtcgtgtaatggtcttgtttgggatgaaggagcaaatacaatgactgagagtgaagctgaggttcaaactttgcttgataatctggggcttcgagaaaagcagcaatttccgatttcacagaacaaacggtatgttgcaaggaatgggtcgcctgtgctgctacctaccaatccgattgagctgatcaagagcaactttctttctacaaaatcaaagtttcagattcttctggagccatatttgtggaagaaaaaaagagtttccgatgatcacacccgagaaactgtgggtgggttctttcagcgtcattttgggaaagaggtcgttgattatctcattgatccctttgttgccgggacaagtgctggagatcctgaatctctttcgatgccacattcttttccagagttatggaacatagaaaaaaggtatggttcggttatagctggggcaattcagtcaaaattatcttccaggaaggaaaaaggtagagaaacaaagggttctgtagagaaaggaaagcgtcagcgcggttctttttcctttcagggtggtatgcagacactcactgatacattgtgcaaacagcttggcaaacatgagcttaaactgaactcaaaggttttgtcattatcttacagtcatgatgggaacaccacatcagaaaattggtcggtttcctgtgctgctaataatgacaagcatttacaaagttcatctgttgatgctataatcctgacggctccactctgcagtatcaaagaaatgaagatctcgagaagaggaaccatcttcccacttgattttcttcctgaggtgacttatatgccgctatcagtgattataaccagcttcaagaaggaaaacgttaaaaggcctcttgagggatttggagttcttgttccctccaaagagcaggaaaatggcttaaaaacgctaggtacactattttcttccatgatgtttccagatcgtgcacctagtgaccaatatctttacactacctttgttgggggaagtcgaaacaaggaactggcaaaagcttcgaaggatgagttgaaggaaattgtttcctctgacataaggcaacttttgggagcggaaggcgagccgacatttgtgaaccattaccattggagcaaagcatttccattgtatgggcataactacgattcagtcattgaagcaatcgagcagatggagaaaaatcttcctggtttattctatgcaggtaaccataggggtggactatctgttggcaaagcaatagcttcggggtgcaaagcagctgaacttgcaatctcctatctggaatcttcttcagatggcaagatgcttcagcaaggatcgtcatcttag

Protein Analysis

596

Amino Acids

64.28

Weight (kDa)

6.57

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1277
AatII GACGTC 1 cut(s) 15
Acc36I ACCTGC 1 cut(s) 1652
AccB7I CCANNNNNTGG 1 cut(s) 1589
AccBSI CCGCTC 1 cut(s) 1532
AccII CGCG 1 cut(s) 963
AciI CCGC 6 cut(s) 198, 240, 350, 963, 1262, 1532
AclI AACGTT 1 cut(s) 1299
AclWI GGATC 3 cut(s) 767, 797, 1786
AcuI CTGAAG 3 cut(s) 236, 1737, 1754
AcyI GRCGYC 1 cut(s) 12
AdeI CACNNNGTG 1 cut(s) 1415
AfaI GTAC 2 cut(s) 390, 1375
AfiI CCNNNNNNNGG 6 cut(s) 62, 284, 385, 1316, 1443, 1589
AgsI TTSAA 6 cut(s) 161, 364, 497, 1288, 1492, 1616
AjnI CCWGG 3 cut(s) 283, 905, 1645
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AloI GAACNNNNNNTCC 4 cut(s) 1311, 1317, 1343, 1349
Alw21I GWGCWC 2 cut(s) 260, 1411
Alw44I GTGCAC 1 cut(s) 1407
AlwI GGATC 3 cut(s) 767, 797, 1786
Ama87I CYCGRG 2 cut(s) 708, 1207
AoxI GGCC 5 cut(s) 25, 52, 270, 351, 1307
ApaLI GTGCAC 1 cut(s) 1407
ApeKI GCWGC 5 cut(s) 347, 532, 589, 1118, 1718
ArsI GACNNNNNNTTYG 4 cut(s) 84, 116, 1043, 1075
AspLEI GCGC 3 cut(s) 265, 329, 963
AspS9I GGNCC 1 cut(s) 53
AsuC2I CCSGG 1 cut(s) 787
AsuHPI GGTGA 3 cut(s) 130, 143, 1261
AsuII TTCGAA 1 cut(s) 1478
AvaI CYCGRG 2 cut(s) 708, 1207
AxyI CCTNAGG 1 cut(s) 1245
BaeGI GKGCMC 1 cut(s) 1411
Bbv12I GWGCWC 2 cut(s) 260, 1411
BbvCI CCTCAGC 1 cut(s) 489
BbvI GCAGC 5 cut(s) 334, 544, 576, 1105, 1730
BccI CCATC 7 cut(s) 77, 170, 262, 1073, 1229, 1624, 1751
BceAI ACGGC 1 cut(s) 1188
BcgI CGANNNNNNTGC 4 cut(s) 1458, 1492, 1686, 1720
BciT130I CCWGG 3 cut(s) 285, 907, 1647
BclI TGATCA 2 cut(s) 615, 700
BcnI CCSGG 1 cut(s) 787
BfaI CTAG 4 cut(s) 21, 143, 1370, 1413
BfmI CTRYAG 2 cut(s) 939, 1183
BfoI RGCGCY 1 cut(s) 330
BfuAI ACCTGC 1 cut(s) 1652
BglII AGATCT 1 cut(s) 1203
BisI GCNGC 8 cut(s) 241, 348, 351, 533, 590, 1119, 1262, 1719
BlsI GCNGC 8 cut(s) 242, 349, 352, 534, 591, 1120, 1263, 1720
Bme1390I CCNGG 4 cut(s) 285, 787, 907, 1647
BmeT110I CYCGRG 2 cut(s) 708, 1207
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 3 cut(s) 666, 1176, 1219
BmrFI CCNGG 4 cut(s) 285, 787, 907, 1647
BmrI ACTGGG 1 cut(s) 50
BmsI GCATC 3 cut(s) 810, 1147, 1755
BmuI ACTGGG 1 cut(s) 50
BplI GAGNNNNNCTC 2 cut(s) 192, 224
BpmI CTGGAG 4 cut(s) 306, 432, 683, 819
Bpu10I CCTNAGC 1 cut(s) 489
Bpu14I TTCGAA 1 cut(s) 1478
BpuEI CTTGAG 1 cut(s) 1334
BpuMI CCSGG 1 cut(s) 787
BsaBI GATNNNNATC 1 cut(s) 1783
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 283, 399
BsaXI ACNNNNNCTCC 2 cut(s) 1317, 1347
Bsc4I CCNNNNNNNGG 6 cut(s) 62, 284, 385, 1316, 1443, 1589
Bse1I ACTGG 2 cut(s) 56, 1470
Bse21I CCTNAGG 1 cut(s) 1245
Bse8I GATNNNNATC 1 cut(s) 1783
BseBI CCWGG 3 cut(s) 285, 907, 1647
BseDI CCNNGG 2 cut(s) 283, 399
BseGI GGATG 4 cut(s) 46, 52, 460, 1489
BseJI GATNNNNATC 1 cut(s) 1783
BseLI CCNNNNNNNGG 6 cut(s) 62, 284, 385, 1316, 1443, 1589
BseMII CTCAG 4 cut(s) 86, 468, 480, 1236
BseNI ACTGG 2 cut(s) 56, 1470
BseRI GAGGAG 1 cut(s) 246
BseSI GKGCMC 1 cut(s) 1411
BseXI GCAGC 5 cut(s) 334, 544, 576, 1105, 1730
BseYI CCCAGC 1 cut(s) 878
Bsh1236I CGCG 1 cut(s) 963
BshFI GGCC 5 cut(s) 27, 54, 272, 353, 1309
BsiHKAI GWGCWC 2 cut(s) 260, 1411
BsiHKCI CYCGRG 2 cut(s) 708, 1207
BsiSI CCGG 1 cut(s) 786
BslFI GGGAC 1 cut(s) 802
BslI CCNNNNNNNGG 6 cut(s) 62, 284, 385, 1316, 1443, 1589
BsmFI GGGAC 1 cut(s) 802
BsnI GGCC 5 cut(s) 27, 54, 272, 353, 1309
BsoBI CYCGRG 2 cut(s) 708, 1207
Bsp119I TTCGAA 1 cut(s) 1478
Bsp1286I GDGCHC 2 cut(s) 260, 1411
Bsp143I GATC 8 cut(s) 126, 615, 700, 772, 802, 1203, 1402, 1778
BspACI CCGC 6 cut(s) 198, 240, 350, 963, 1262, 1532
BspANI GGCC 5 cut(s) 27, 54, 272, 353, 1309
BspCNI CTCAG 4 cut(s) 85, 469, 481, 1237
BspFNI CGCG 1 cut(s) 963
BspHI TCATGA 1 cut(s) 1075
BspLI GGNNCC 3 cut(s) 666, 1176, 1219
BspMAI CTGCAG 1 cut(s) 1187
BspMI ACCTGC 1 cut(s) 1652
BspPI GGATC 3 cut(s) 767, 797, 1786
BspQI GCTCTTC 1 cut(s) 400
BspT104I TTCGAA 1 cut(s) 1478
BsrBI CCGCTC 1 cut(s) 1532
BsrI ACTGG 2 cut(s) 56, 1470
BssECI CCNNGG 2 cut(s) 283, 399
BssMI GATC 8 cut(s) 126, 615, 700, 772, 802, 1203, 1402, 1778
BssNI GRCGYC 1 cut(s) 12
Bst2UI CCWGG 3 cut(s) 285, 907, 1647
Bst4CI ACNGT 4 cut(s) 388, 561, 718, 1073
Bst6I CTCTTC 3 cut(s) 29, 400, 1207
BstACI GRCGYC 1 cut(s) 12
BstBI TTCGAA 1 cut(s) 1478
BstC8I GCNNGC 2 cut(s) 345, 1541
BstDEI CTNAG 5 cut(s) 72, 477, 489, 1245, 1788
BstEII GGTNACC 1 cut(s) 1664
BstF5I GGATG 4 cut(s) 46, 52, 460, 1489
BstFNI CGCG 1 cut(s) 963
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 3 cut(s) 265, 329, 963
BstKTI GATC 8 cut(s) 129, 618, 703, 775, 805, 1206, 1405, 1781
BstMBI GATC 8 cut(s) 126, 615, 700, 772, 802, 1203, 1402, 1778
BstMWI GCNNNNNNNGC 3 cut(s) 269, 589, 1727
BstNI CCWGG 3 cut(s) 285, 907, 1647
BstPI GGTNACC 1 cut(s) 1664
BstSCI CCNGG 4 cut(s) 283, 785, 905, 1645
BstSFI CTRYAG 2 cut(s) 939, 1183
BstSLI GKGCMC 1 cut(s) 1411
BstUI CGCG 1 cut(s) 963
BstV1I GCAGC 5 cut(s) 334, 544, 576, 1105, 1730
BstX2I RGATCY 2 cut(s) 802, 1203
BstXI CCANNNNNNTGG 3 cut(s) 675, 843, 1676
BstYI RGATCY 2 cut(s) 802, 1203
Bsu36I CCTNAGG 1 cut(s) 1245
BsuRI GGCC 5 cut(s) 27, 54, 272, 353, 1309
BtsCI GGATG 4 cut(s) 46, 52, 460, 1489
BtsI GCAGTG 1 cut(s) 250
BtsIMutI CAGTG 3 cut(s) 250, 999, 1275
BveI ACCTGC 1 cut(s) 1652
Cac8I GCNNGC 2 cut(s) 345, 1541
CciI TCATGA 1 cut(s) 1075
CfoI GCGC 3 cut(s) 265, 329, 963
Cfr13I GGNCC 1 cut(s) 53
CseI GACGC 2 cut(s) 725, 944
Csp6I GTAC 2 cut(s) 389, 1374
CviAII CATG 4 cut(s) 371, 1031, 1076, 1390
CviQI GTAC 2 cut(s) 389, 1374
DdeI CTNAG 5 cut(s) 72, 477, 489, 1245, 1788
DpnI GATC 8 cut(s) 128, 617, 702, 774, 804, 1205, 1404, 1780
DpnII GATC 8 cut(s) 126, 615, 700, 772, 802, 1203, 1402, 1778
DraIII CACNNNGTG 1 cut(s) 1415
Eam1104I CTCTTC 3 cut(s) 29, 400, 1207
EarI CTCTTC 3 cut(s) 29, 400, 1207
EciI GGCGGA 1 cut(s) 213
Eco147I AGGCCT 1 cut(s) 1309
Eco57I CTGAAG 3 cut(s) 236, 1737, 1754
Eco81I CCTNAGG 1 cut(s) 1245
Eco88I CYCGRG 2 cut(s) 708, 1207
Eco91I GGTNACC 1 cut(s) 1664
EcoO65I GGTNACC 1 cut(s) 1664
EcoRII CCWGG 3 cut(s) 283, 905, 1645
FaeI CATG 4 cut(s) 374, 1034, 1079, 1393
FalI AAGNNNNNCTT 4 cut(s) 153, 185, 611, 643
FaqI GGGAC 1 cut(s) 802
FatI CATG 4 cut(s) 370, 1030, 1075, 1389
FauNDI CATATG 1 cut(s) 30
FbaI TGATCA 2 cut(s) 615, 700
Fnu4HI GCNGC 8 cut(s) 241, 348, 351, 533, 590, 1119, 1262, 1719
FokI GGATG 4 cut(s) 53, 59, 467, 1496
Fsp4HI GCNGC 8 cut(s) 241, 348, 351, 533, 590, 1119, 1262, 1719
FspBI CTAG 4 cut(s) 21, 143, 1370, 1413
GlaI GCGC 3 cut(s) 264, 328, 962
GluI GCNGC 8 cut(s) 241, 348, 351, 533, 590, 1119, 1262, 1719
GsaI CCCAGC 1 cut(s) 882
GsuI CTGGAG 4 cut(s) 306, 432, 683, 819
HaeII RGCGCY 1 cut(s) 330
HaeIII GGCC 5 cut(s) 27, 54, 272, 353, 1309
HapII CCGG 1 cut(s) 786
HgaI GACGC 2 cut(s) 725, 944
HhaI GCGC 3 cut(s) 265, 329, 963
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 4 cut(s) 374, 1034, 1079, 1393
Hin6I GCGC 3 cut(s) 263, 327, 961
HinP1I GCGC 3 cut(s) 263, 327, 961
HindIII AAGCTT 1 cut(s) 1473
HinfI GANTC 6 cut(s) 134, 207, 655, 809, 1604, 1745
HpaII CCGG 1 cut(s) 786
HphI GGTGA 3 cut(s) 130, 143, 1261
Hpy166II GTNNAC 5 cut(s) 206, 1376, 1409, 1555, 1679
Hpy8I GTNNAC 5 cut(s) 206, 1376, 1409, 1555, 1679
HpyCH4III ACNGT 4 cut(s) 388, 561, 718, 1073
HpyCH4IV ACGT 3 cut(s) 12, 381, 1299
HpyCH4V TGCA 8 cut(s) 569, 991, 1014, 1185, 1409, 1661, 1713, 1730
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 589, 1727
HpyF3I CTNAG 5 cut(s) 72, 477, 489, 1245, 1788
HpySE526I ACGT 3 cut(s) 12, 381, 1299
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 4 cut(s) 374, 1034, 1079, 1393
HspAI GCGC 3 cut(s) 263, 327, 961
Ksp22I TGATCA 2 cut(s) 615, 700
Kzo9I GATC 8 cut(s) 126, 615, 700, 772, 802, 1203, 1402, 1778
LguI GCTCTTC 1 cut(s) 400
LmnI GCTCC 5 cut(s) 461, 664, 1180, 1529, 1569
Lsp1109I GCAGC 5 cut(s) 334, 544, 576, 1105, 1730
LweI GCATC 3 cut(s) 810, 1147, 1755
MaeI CTAG 4 cut(s) 21, 143, 1370, 1413
MaeII ACGT 3 cut(s) 12, 381, 1299
MaeIII GTNAC 4 cut(s) 382, 1249, 1415, 1664
MalI GATC 8 cut(s) 128, 617, 702, 774, 804, 1205, 1404, 1780
MbiI CCGCTC 1 cut(s) 1532
MboI GATC 8 cut(s) 126, 615, 700, 772, 802, 1203, 1402, 1778
MflI RGATCY 2 cut(s) 802, 1203
MhlI GDGCHC 2 cut(s) 260, 1411
MluCI AATT 5 cut(s) 536, 885, 896, 1099, 1497
MlyI GAGTC 2 cut(s) 143, 201
MmeI TCCRAC 2 cut(s) 58, 208
MseI TTAA 3 cut(s) 1038, 1302, 1361
MslI CAYNNNNRTG 2 cut(s) 673, 1674
MspA1I CMGCKG 1 cut(s) 1721
MspI CCGG 1 cut(s) 786
MspR9I CCNGG 4 cut(s) 285, 787, 907, 1647
MvaI CCWGG 3 cut(s) 285, 907, 1647
MvnI CGCG 1 cut(s) 963
MwoI GCNNNNNNNGC 3 cut(s) 269, 589, 1727
NciI CCSGG 1 cut(s) 787
NdeI CATATG 1 cut(s) 30
NdeII GATC 8 cut(s) 126, 615, 700, 772, 802, 1203, 1402, 1778
NlaIII CATG 4 cut(s) 374, 1034, 1079, 1393
NlaIV GGNNCC 3 cut(s) 666, 1176, 1219
NmeAIII GCCGAG 1 cut(s) 424
NmuCI GTSAC 2 cut(s) 1249, 1415
NspV TTCGAA 1 cut(s) 1478
PaeR7I CTCGAG 1 cut(s) 1207
PagI TCATGA 1 cut(s) 1075
PceI AGGCCT 1 cut(s) 1309
PciSI GCTCTTC 1 cut(s) 400
PfeI GAWTC 4 cut(s) 655, 809, 1604, 1745
PflMI CCANNNNNTGG 1 cut(s) 1589
PfoI TCCNGGA 1 cut(s) 905
PkrI GCNGC 8 cut(s) 242, 349, 352, 534, 591, 1120, 1263, 1720
PleI GAGTC 2 cut(s) 142, 201
PpsI GAGTC 2 cut(s) 142, 201
PsiI TTATAA 1 cut(s) 1277
Psp1406I AACGTT 1 cut(s) 1299
Psp6I CCWGG 3 cut(s) 283, 905, 1645
PspEI GGTNACC 1 cut(s) 1664
PspFI CCCAGC 1 cut(s) 878
PspGI CCWGG 3 cut(s) 283, 905, 1645
PspN4I GGNNCC 3 cut(s) 666, 1176, 1219
PspPI GGNCC 1 cut(s) 53
PstI CTGCAG 1 cut(s) 1187
PsuI RGATCY 2 cut(s) 802, 1203
PvuII CAGCTG 1 cut(s) 1721
RsaI GTAC 2 cut(s) 390, 1375
RsaNI GTAC 2 cut(s) 389, 1374
RseI CAYNNNNRTG 2 cut(s) 673, 1674
SapI GCTCTTC 1 cut(s) 400
SaqAI TTAA 3 cut(s) 1038, 1302, 1361
SatI GCNGC 8 cut(s) 241, 348, 351, 533, 590, 1119, 1262, 1719
Sau3AI GATC 8 cut(s) 126, 615, 700, 772, 802, 1203, 1402, 1778
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 2 cut(s) 143, 201
ScrFI CCNGG 4 cut(s) 285, 787, 907, 1647
SduI GDGCHC 2 cut(s) 260, 1411
SfaNI GCATC 3 cut(s) 810, 1147, 1755
SfcI CTRYAG 2 cut(s) 939, 1183
Sfr274I CTCGAG 1 cut(s) 1207
SfuI TTCGAA 1 cut(s) 1478
SlaI CTCGAG 1 cut(s) 1207
SmiMI CAYNNNNRTG 2 cut(s) 673, 1674
SmlI CTYRAG 2 cut(s) 1207, 1313
SmoI CTYRAG 2 cut(s) 1207, 1313
Sse9I AATT 5 cut(s) 536, 885, 896, 1099, 1497
SseBI AGGCCT 1 cut(s) 1309
SsiI CCGC 6 cut(s) 198, 240, 350, 963, 1262, 1532
SspMI CTAG 4 cut(s) 21, 143, 1370, 1413
StuI AGGCCT 1 cut(s) 1309
StyD4I CCNGG 4 cut(s) 283, 785, 905, 1645
TaaI ACNGT 4 cut(s) 388, 561, 718, 1073
TaiI ACGT 3 cut(s) 15, 384, 1302
TaqI TCGA 9 cut(s) 102, 210, 393, 523, 818, 1208, 1453, 1478, 1623
TasI AATT 5 cut(s) 536, 885, 896, 1099, 1497
TauI GCSGC 3 cut(s) 243, 353, 1264
TfiI GAWTC 4 cut(s) 655, 809, 1604, 1745
Tru1I TTAA 3 cut(s) 1038, 1302, 1361
Tru9I TTAA 3 cut(s) 1038, 1302, 1361
TscAI CASTG 3 cut(s) 250, 1006, 1275
TseFI GTSAC 2 cut(s) 1249, 1415
TseI GCWGC 5 cut(s) 347, 532, 589, 1118, 1718
Tsp45I GTSAC 2 cut(s) 1249, 1415
TspDTI ATGAA 4 cut(s) 47, 471, 1137, 1214
TspRI CASTG 3 cut(s) 250, 1006, 1275
Van91I CCANNNNNTGG 1 cut(s) 1589
VneI GTGCAC 1 cut(s) 1407
XhoI CTCGAG 1 cut(s) 1207
XspI CTAG 4 cut(s) 21, 143, 1370, 1413
ZraI GACGTC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.