Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006685

Physical Location & Seq

Genomic Coordinates Forward (+)

87702718 .. 87707566

Gene Structure 4849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG661400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGGCCTCGCCTACCCCTGGAGATAAGCACAGCGCTGTGAAAAGAGTGGCTGTTGTTGGGGCTGGTGTTAGTGGGCTTGCTGCGGCCTACAAGTTGAAATCACATGGTTTCGACGTTACGGTACTCGAAGCCGAGGGAAGAGCTGGAGGGAAGTTGAGAAGTGTGTCGTATAATGGTCTTGTTTGGGATGAAGGTGCAAATACAATGACTGAGAGTGAAGCCGAGGTTCAAACTTTGCTTGATAATCTGGGGCTTCGAGAAAAGCAGCAATTTCCGATTTCACAGAACAAACGGTATGTTGCAAGGAATGGGTCGCCTGTGCTGCTACCTACCAATCCGATTGAGCTGATCAAGAGCAACTTTCTTTCTACAAAATCAAAGTTTCAGATTCTTCTGGAGCCATATTTGTGGAAGAAAAAAAGAGTTTCCGATGATCACACCCAAGAAAGTGTGGGTGGGTTCTTTCAGCGTCATTTTGGGAAAGAGGTCGTTGATTATCTCATTGATCCCTTCGTTGCCGGTACAAGTGCTGGAGATCCTGAATCTCTTTCGATGCCACATTCTTTTCCGGAGTTATGGAACATAGAAAAAAGGTATGGTTCGGTAATAGCTGGGGCAATTCAGTCAAAATTATCTTCCAGGAAGGAAAAAAGTAGAGAAACAAAGGGTTCTGTAGAAAAAGGAAAGCGTCAGCGCGGTTCTTTTTCCTTTCAGGGTGGTATGCAGACACTCACTGATACATTGTCCAAACAGCTTGGCAAACATGAGCTTAAACTGAACTCAAAGGTTTTGTCATTATCTTACAGTCATGATGGGAACACTACATCAGAAAATTGGTCGGTTTCCTGTGTTGCTAATGATGACAAGCATTCACAAAGTTCATCTGTTGATGCTATAATCCTGACGGCTCCACTCTGCAGTATAAAAGAAATGAAGATCTCGAGAAGAGGAACCATCTTCCCACTTGATTTTCTTCCTGAGGTGACTTATATGCCGCTATCAGTGATAATAACCAGCTTCAAGAAGGAAAATGTTAAAAGGCCTCTTGAGGGATTCGGAGTTCTAGTTCCCTCCAAAGAGCAGGAAAATGGCTTAAAAACACTAGGTACACTGTTTTCTTCCATGATGTTTCCAGATCGTGCACCTAGTGACCAATATCTTTACACTACCTTTGTTGGGGGAAGTCGAAACAAGGAACTGGCAAAAGCTTCAAAGGATGAATTGAAGCAAATTGTTACCTCTGACATAGGGCAACTTTTGGGAGCGGAAGGCGAGCCGACATTTGTGAACCATTACCATTGGAGCAAAGCATTTCCATTGTATGGGCATAACTACGATTCAGTCATTGAAGCAATCGAGCAGATGGAGAAAAATCTTCCTGGTTTATTCTATGCAGGTAATTTCTCCTTTAAGAGTGAGTTCTGGATGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004729 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0015994 GO:0015995 GO:0016020 GO:0016491 GO:0016627 GO:0016634 GO:0018130 GO:0019438 GO:0019866 GO:0022414 GO:0031090 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042170 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0055114 GO:0061458 GO:0070818 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

477

Amino Acids

52.87

Weight (kDa)

8.81

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	15 - 50	4.1e-08	FAD dependent oxidoreductase
FAD_binding_2	PF00890	16 - 62	3e-06	FAD binding domain
NAD_binding_8	PF13450	18 - 82	7.3e-15	NAD(P)-binding Rossmann-like domain
Amino_oxidase	PF01593	23 - 468	5.1e-72	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14220 AT5G14220 AT5G14220 AT5G14220 AT5G14220
fragaria_vesca	FvH4_6g53090 FvH4_6g53090 FvH4_6g53090
malus_domestica	MD17G1014700.v1.1 MD17G1014800.v1.1
prunus_persica	Prupe.3G303000_v2.0.a1 Prupe.3G303000_v2.0.a1 Prupe.3G303000_v2.0.a1
pyrus_communis	pycom17g01180
rosa_chinensis	RchiOBHm_Chr2g0174871 RchiOBHm_Chr2g0174941
rosa_laevigata	RLG00000022303
rosa_multiflora	Rmu_sc0001277.1_g000002 Rmu_sc0009766.1_g000003
rosa_roxburghii	Rroxscaffold_2G00077620
rosa_rugosa	Rorug02G0580300
rosa_samantha	Rh2AG661400 Rh2BG672700 Rh2CG635500 Rh2DG685900
rosa_wichuraiana	Rw2G054200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1385
AccB7I	CCANNNNNTGG	1 cut(s)	1322
AccBSI	CCGCTC	1 cut(s)	1265
AccII	CGCG	1 cut(s)	696
AccIII	TCCGGA	1 cut(s)	568
AciI	CCGC	4 cut(s)	83, 696, 995, 1265
AclWI	GGATC	2 cut(s)	500, 530
AdeI	CACNNNGTG	1 cut(s)	1148
AfaI	GTAC	3 cut(s)	123, 523, 1108
AfeI	AGCGCT	1 cut(s)	34
AfiI	CCNNNNNNNGG	4 cut(s)	17, 1049, 1176, 1322
AgsI	TTSAA	6 cut(s)	97, 230, 1021, 1212, 1225, 1349
AjnI	CCWGG	3 cut(s)	16, 638, 1378
AloI	GAACNNNNNNTCC	4 cut(s)	1044, 1050, 1076, 1082
AluBI	AGCT	7 cut(s)	143, 346, 611, 754, 769, 1017, 1208
AluI	AGCT	7 cut(s)	143, 346, 611, 754, 769, 1017, 1208
Alw21I	GWGCWC	1 cut(s)	1144
Alw44I	GTGCAC	1 cut(s)	1140
AlwI	GGATC	2 cut(s)	500, 530
Ama87I	CYCGRG	1 cut(s)	940
Aor13HI	TCCGGA	1 cut(s)	568
Aor51HI	AGCGCT	1 cut(s)	34
AoxI	GGCC	3 cut(s)	3, 84, 1040
ApaLI	GTGCAC	1 cut(s)	1140
ApeKI	GCWGC	3 cut(s)	80, 265, 322
ArsI	GACNNNNNNTTYG	2 cut(s)	776, 808
AspLEI	GCGC	2 cut(s)	35, 696
AsuHPI	GGTGA	1 cut(s)	994
AvaI	CYCGRG	1 cut(s)	940
AxyI	CCTNAGG	1 cut(s)	978
BaeGI	GKGCMC	1 cut(s)	1144
Bbv12I	GWGCWC	1 cut(s)	1144
BbvI	GCAGC	3 cut(s)	67, 277, 309
BccI	CCATC	3 cut(s)	806, 962, 1357
BceAI	ACGGC	1 cut(s)	921
BciT130I	CCWGG	3 cut(s)	18, 640, 1380
BclI	TGATCA	2 cut(s)	348, 433
BfaI	CTAG	3 cut(s)	1064, 1103, 1146
BfmI	CTRYAG	2 cut(s)	672, 916
BfoI	RGCGCY	1 cut(s)	36
BfuAI	ACCTGC	1 cut(s)	1385
BglII	AGATCT	1 cut(s)	936
BisI	GCNGC	5 cut(s)	81, 84, 266, 323, 995
BlsI	GCNGC	5 cut(s)	82, 85, 267, 324, 996
Bme1390I	CCNGG	3 cut(s)	18, 640, 1380
BmeT110I	CYCGRG	1 cut(s)	940
BmiI	GGNNCC	3 cut(s)	399, 909, 952
BmrFI	CCNGG	3 cut(s)	18, 640, 1380
BmsI	GCATC	2 cut(s)	543, 880
BpmI	CTGGAG	4 cut(s)	39, 165, 416, 552
BpuEI	CTTGAG	1 cut(s)	1067
BsaJI	CCNNGG	3 cut(s)	16, 132, 222
BsaWI	WCCGGW	1 cut(s)	568
BsaXI	ACNNNNNCTCC	2 cut(s)	1050, 1080
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 1049, 1176, 1322
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	1 cut(s)	1203
Bse21I	CCTNAGG	1 cut(s)	978
BseAI	TCCGGA	1 cut(s)	568
BseBI	CCWGG	3 cut(s)	18, 640, 1380
BseDI	CCNNGG	3 cut(s)	16, 132, 222
BseGI	GGATG	3 cut(s)	193, 1222, 1431
BseLI	CCNNNNNNNGG	4 cut(s)	17, 1049, 1176, 1322
BseMII	CTCAG	2 cut(s)	201, 969
BseNI	ACTGG	1 cut(s)	1203
BseSI	GKGCMC	1 cut(s)	1144
BseXI	GCAGC	3 cut(s)	67, 277, 309
BseYI	CCCAGC	1 cut(s)	611
Bsh1236I	CGCG	1 cut(s)	696
BshFI	GGCC	3 cut(s)	5, 86, 1042
BsiHKAI	GWGCWC	1 cut(s)	1144
BsiHKCI	CYCGRG	1 cut(s)	940
BsiSI	CCGG	2 cut(s)	519, 569
BslI	CCNNNNNNNGG	4 cut(s)	17, 1049, 1176, 1322
BsmI	GAATGC	1 cut(s)	868
BsnI	GGCC	3 cut(s)	5, 86, 1042
BsoBI	CYCGRG	1 cut(s)	940
Bsp1286I	GDGCHC	1 cut(s)	1144
Bsp13I	TCCGGA	1 cut(s)	568
Bsp143I	GATC	6 cut(s)	348, 433, 505, 535, 936, 1135
BspACI	CCGC	4 cut(s)	83, 696, 995, 1265
BspANI	GGCC	3 cut(s)	5, 86, 1042
BspCNI	CTCAG	2 cut(s)	202, 970
BspEI	TCCGGA	1 cut(s)	568
BspFNI	CGCG	1 cut(s)	696
BspHI	TCATGA	1 cut(s)	808
BspLI	GGNNCC	3 cut(s)	399, 909, 952
BspMAI	CTGCAG	1 cut(s)	920
BspMI	ACCTGC	1 cut(s)	1385
BspPI	GGATC	2 cut(s)	500, 530
BspQI	GCTCTTC	1 cut(s)	133
BsrBI	CCGCTC	1 cut(s)	1265
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	1203
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	3 cut(s)	16, 132, 222
BssMI	GATC	6 cut(s)	348, 433, 505, 535, 936, 1135
Bst2UI	CCWGG	3 cut(s)	18, 640, 1380
Bst4CI	ACNGT	4 cut(s)	121, 294, 806, 1113
Bst6I	CTCTTC	2 cut(s)	133, 940
BstC8I	GCNNGC	2 cut(s)	78, 1274
BstDEI	CTNAG	2 cut(s)	210, 978
BstF5I	GGATG	3 cut(s)	193, 1222, 1431
BstFNI	CGCG	1 cut(s)	696
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	2 cut(s)	35, 696
BstKTI	GATC	6 cut(s)	351, 436, 508, 538, 939, 1138
BstMBI	GATC	6 cut(s)	348, 433, 505, 535, 936, 1135
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstNI	CCWGG	3 cut(s)	18, 640, 1380
BstSCI	CCNGG	3 cut(s)	16, 638, 1378
BstSFI	CTRYAG	2 cut(s)	672, 916
BstSLI	GKGCMC	1 cut(s)	1144
BstUI	CGCG	1 cut(s)	696
BstV1I	GCAGC	3 cut(s)	67, 277, 309
BstX2I	RGATCY	2 cut(s)	535, 936
BstXI	CCANNNNNNTGG	1 cut(s)	408
BstYI	RGATCY	2 cut(s)	535, 936
Bsu36I	CCTNAGG	1 cut(s)	978
BsuRI	GGCC	3 cut(s)	5, 86, 1042
BtsCI	GGATG	3 cut(s)	193, 1222, 1431
BtsIMutI	CAGTG	3 cut(s)	732, 1008, 1109
BveI	ACCTGC	1 cut(s)	1385
Cac8I	GCNNGC	2 cut(s)	78, 1274
CciI	TCATGA	1 cut(s)	808
CfoI	GCGC	2 cut(s)	35, 696
Cfr10I	RCCGGY	1 cut(s)	518
CseI	GACGC	2 cut(s)	458, 677
Csp6I	GTAC	3 cut(s)	122, 522, 1107
CviAII	CATG	4 cut(s)	104, 764, 809, 1123
CviQI	GTAC	3 cut(s)	122, 522, 1107
DdeI	CTNAG	2 cut(s)	210, 978
DpnI	GATC	6 cut(s)	350, 435, 507, 537, 938, 1137
DpnII	GATC	6 cut(s)	348, 433, 505, 535, 936, 1135
DraIII	CACNNNGTG	1 cut(s)	1148
Eam1104I	CTCTTC	2 cut(s)	133, 940
EarI	CTCTTC	2 cut(s)	133, 940
Eco147I	AGGCCT	1 cut(s)	1042
Eco47III	AGCGCT	1 cut(s)	34
Eco81I	CCTNAGG	1 cut(s)	978
Eco88I	CYCGRG	1 cut(s)	940
EcoRII	CCWGG	3 cut(s)	16, 638, 1378
FaeI	CATG	4 cut(s)	107, 767, 812, 1126
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	4 cut(s)	103, 763, 808, 1122
FbaI	TGATCA	2 cut(s)	348, 433
Fnu4HI	GCNGC	5 cut(s)	81, 84, 266, 323, 995
FokI	GGATG	2 cut(s)	200, 1229
Fsp4HI	GCNGC	5 cut(s)	81, 84, 266, 323, 995
FspBI	CTAG	3 cut(s)	1064, 1103, 1146
GlaI	GCGC	2 cut(s)	34, 695
GluI	GCNGC	5 cut(s)	81, 84, 266, 323, 995
GsaI	CCCAGC	1 cut(s)	615
GsuI	CTGGAG	4 cut(s)	39, 165, 416, 552
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	3 cut(s)	5, 86, 1042
HapII	CCGG	2 cut(s)	519, 569
HgaI	GACGC	2 cut(s)	458, 677
HhaI	GCGC	2 cut(s)	35, 696
Hin1II	CATG	4 cut(s)	107, 767, 812, 1126
Hin6I	GCGC	2 cut(s)	33, 694
HinP1I	GCGC	2 cut(s)	33, 694
HindIII	AAGCTT	1 cut(s)	1206
HinfI	GANTC	4 cut(s)	388, 542, 1053, 1337
HpaII	CCGG	2 cut(s)	519, 569
HphI	GGTGA	1 cut(s)	994
Hpy166II	GTNNAC	3 cut(s)	1109, 1142, 1288
Hpy188I	TCNGA	7 cut(s)	276, 339, 387, 430, 829, 1058, 1243
Hpy8I	GTNNAC	3 cut(s)	1109, 1142, 1288
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	5 cut(s)	185, 520, 637, 1018, 1262
HpyCH4III	ACNGT	4 cut(s)	121, 294, 806, 1113
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	6 cut(s)	197, 302, 724, 918, 1142, 1394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpyF3I	CTNAG	2 cut(s)	210, 978
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	4 cut(s)	107, 767, 812, 1126
HspAI	GCGC	2 cut(s)	33, 694
Kpn2I	TCCGGA	1 cut(s)	568
Ksp22I	TGATCA	2 cut(s)	348, 433
Kzo9I	GATC	6 cut(s)	348, 433, 505, 535, 936, 1135
LguI	GCTCTTC	1 cut(s)	133
LmnI	GCTCC	4 cut(s)	397, 913, 1262, 1302
Lsp1109I	GCAGC	3 cut(s)	67, 277, 309
LweI	GCATC	2 cut(s)	543, 880
MaeI	CTAG	3 cut(s)	1064, 1103, 1146
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	4 cut(s)	115, 982, 1148, 1234
MalI	GATC	6 cut(s)	350, 435, 507, 537, 938, 1137
MbiI	CCGCTC	1 cut(s)	1265
MboI	GATC	6 cut(s)	348, 433, 505, 535, 936, 1135
MflI	RGATCY	2 cut(s)	535, 936
MhlI	GDGCHC	1 cut(s)	1144
MluCI	AATT	7 cut(s)	269, 618, 629, 832, 1220, 1230, 1399
MroI	TCCGGA	1 cut(s)	568
MseI	TTAA	4 cut(s)	771, 1035, 1094, 1410
MslI	CAYNNNNRTG	1 cut(s)	406
MspI	CCGG	2 cut(s)	519, 569
MspR9I	CCNGG	3 cut(s)	18, 640, 1380
Mva1269I	GAATGC	1 cut(s)	868
MvaI	CCWGG	3 cut(s)	18, 640, 1380
MvnI	CGCG	1 cut(s)	696
MwoI	GCNNNNNNNGC	1 cut(s)	322
NdeII	GATC	6 cut(s)	348, 433, 505, 535, 936, 1135
NlaIII	CATG	4 cut(s)	107, 767, 812, 1126
NlaIV	GGNNCC	3 cut(s)	399, 909, 952
NmeAIII	GCCGAG	2 cut(s)	157, 247
NmuCI	GTSAC	2 cut(s)	982, 1148
PaeR7I	CTCGAG	1 cut(s)	940
PagI	TCATGA	1 cut(s)	808
PceI	AGGCCT	1 cut(s)	1042
PciSI	GCTCTTC	1 cut(s)	133
PctI	GAATGC	1 cut(s)	868
PfeI	GAWTC	4 cut(s)	388, 542, 1053, 1337
PflMI	CCANNNNNTGG	1 cut(s)	1322
PfoI	TCCNGGA	1 cut(s)	638
PkrI	GCNGC	5 cut(s)	82, 85, 267, 324, 996
Psp6I	CCWGG	3 cut(s)	16, 638, 1378
PspFI	CCCAGC	1 cut(s)	611
PspGI	CCWGG	3 cut(s)	16, 638, 1378
PspN4I	GGNNCC	3 cut(s)	399, 909, 952
PstI	CTGCAG	1 cut(s)	920
PsuI	RGATCY	2 cut(s)	535, 936
RsaI	GTAC	3 cut(s)	123, 523, 1108
RsaNI	GTAC	3 cut(s)	122, 522, 1107
RseI	CAYNNNNRTG	1 cut(s)	406
SapI	GCTCTTC	1 cut(s)	133
SaqAI	TTAA	4 cut(s)	771, 1035, 1094, 1410
SatI	GCNGC	5 cut(s)	81, 84, 266, 323, 995
Sau3AI	GATC	6 cut(s)	348, 433, 505, 535, 936, 1135
ScrFI	CCNGG	3 cut(s)	18, 640, 1380
SduI	GDGCHC	1 cut(s)	1144
SfaNI	GCATC	2 cut(s)	543, 880
SfcI	CTRYAG	2 cut(s)	672, 916
Sfr274I	CTCGAG	1 cut(s)	940
SlaI	CTCGAG	1 cut(s)	940
SmiMI	CAYNNNNRTG	1 cut(s)	406
SmlI	CTYRAG	2 cut(s)	940, 1046
SmoI	CTYRAG	2 cut(s)	940, 1046
Sse9I	AATT	7 cut(s)	269, 618, 629, 832, 1220, 1230, 1399
SseBI	AGGCCT	1 cut(s)	1042
SsiI	CCGC	4 cut(s)	83, 696, 995, 1265
SspMI	CTAG	3 cut(s)	1064, 1103, 1146
StuI	AGGCCT	1 cut(s)	1042
StyD4I	CCNGG	3 cut(s)	16, 638, 1378
TaaI	ACNGT	4 cut(s)	121, 294, 806, 1113
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	7 cut(s)	111, 126, 256, 551, 941, 1186, 1356
TasI	AATT	7 cut(s)	269, 618, 629, 832, 1220, 1230, 1399
TauI	GCSGC	2 cut(s)	86, 997
TfiI	GAWTC	4 cut(s)	388, 542, 1053, 1337
Tru1I	TTAA	4 cut(s)	771, 1035, 1094, 1410
Tru9I	TTAA	4 cut(s)	771, 1035, 1094, 1410
TscAI	CASTG	3 cut(s)	739, 1008, 1116
TseFI	GTSAC	2 cut(s)	982, 1148
TseI	GCWGC	3 cut(s)	80, 265, 322
Tsp45I	GTSAC	2 cut(s)	982, 1148
TspDTI	ATGAA	4 cut(s)	204, 870, 947, 1233
TspRI	CASTG	3 cut(s)	739, 1008, 1116
Van91I	CCANNNNNTGG	1 cut(s)	1322
VneI	GTGCAC	1 cut(s)	1140
XhoI	CTCGAG	1 cut(s)	940
XspI	CTAG	3 cut(s)	1064, 1103, 1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.