Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006685

Physical Location & Seq

Genomic Coordinates Forward (+)

80709889 .. 80714825

Gene Structure 4937 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG635500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGTGGTGGATGCTTGTATCCGTATACTGATTAATTGTTGTATATTGTTACAGCCGATTTCACAGAACAAACGGTATGTTGCAAGGAATGGGTCGCCTGTGCTGCTACCTACCAATCCGATTGAGCTGATCAAGAGCAACTTTCTTTCTACAAAATCAAAGTTTCAGATTCTTCTGGAGCCATATTTGTGGAAGAAAAAAAGAGTTTCCGATGATCACACCCGAGAAACTGTGGGTGGGTTCTTTCAGCGTCATTTTGGGAAAGAGGTCGTTGATTATCTCATTGATCCCTTTGTTGCCGGGACAAGTGCTGGAGATCCTGAATCTCTTTCGATGCCACATTCTTTTCCAGAGTTATGGAACATAGAAAAAAGGTATGGTTCGGTTATAGCTGGGGCAATTCAGTCAAAATTATCTTCCAGGAAGGAAAAAGGTAGAGAAACAAAGGGTTCTGTAGAGAAAGGAAAGCGTCAGCGCGGTTCTTTTTCCTTTCAGGGTGGTATGCAGACACTCACTGATACATTGTGCAAACAGCTTGGCAAACATGAGCTTAAACTGAACTCAAAGGTTTTGTCATTATCTTACAGTCATGATGGGAACACCACATCAGAAAATTGGTCGGTTTCCTGTGCTGCTAATAATGACAAGCATTTACAAAGTTCATCTGTTGATGCTATAATCCTGACGGCTCCACTCTGCAGTATCAAAGAAATGAAGATCTCGAGAAGAGGAACCATCTTCCCACTTGATTTTCTTCCTGAGGTGACTTATATGCCGCTATCAGTGATTATAACCAGCTTCAAGAAGGAAAACGTTAAAAGGCCTCTTGAGGGATTTGGAGTTCTTGTTCCCTCCAAAGAGCAGGAAAATGGCTTAAAAACGCTAGGTACACTATTTTCTTCCATGATGTTTCCAGATCGTGCACCTAGTGACCAATATCTTTACACTACCTTTGTTGGGGGAAGTCGAAACAAGGAACTGGCAAAAGCTTCGAAGGATGAGTTGAAGGAAATTGTTTCCTCTGACATAAGGCAACTTTTGGGAGCGGAAGGCGAGCCGACATTTGTGAACCATTACCATTGGAGCAAAGCATTTCCATTGTATGGGCATAACTACGATTCAGTCATTGAAGCAATCGAGCAGATGGAGAAAAATCTTCCTGGTTTATTCTATGCAGGTAACCATAGGGGTGGACTATCTGTTGGCAAAGCAATAGCTTCGGGGTGCAAAGCAGCTGAACTTGCAATCTCCTATCTGGAATCTTCTTCAGATGGCAAGATGCTTCAGCAAGGATCGTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004729 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0015994 GO:0015995 GO:0016020 GO:0016491 GO:0016627 GO:0016634 GO:0018130 GO:0019438 GO:0019866 GO:0022414 GO:0031090 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042170 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0055114 GO:0061458 GO:0070818 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

434

Amino Acids

48.06

Weight (kDa)

9.0

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amino_oxidase	PF01593	27 - 414	2.4e-50	Flavin containing amine oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14220 AT5G14220 AT5G14220 AT5G14220 AT5G14220
fragaria_vesca	FvH4_6g53090 FvH4_6g53090 FvH4_6g53090
malus_domestica	MD17G1014700.v1.1 MD17G1014800.v1.1
prunus_persica	Prupe.3G303000_v2.0.a1 Prupe.3G303000_v2.0.a1 Prupe.3G303000_v2.0.a1
pyrus_communis	pycom17g01180
rosa_chinensis	RchiOBHm_Chr2g0174871 RchiOBHm_Chr2g0174941
rosa_laevigata	RLG00000022303
rosa_multiflora	Rmu_sc0001277.1_g000002 Rmu_sc0009766.1_g000003
rosa_roxburghii	Rroxscaffold_2G00077620
rosa_rugosa	Rorug02G0580300
rosa_samantha	Rh2AG661400 Rh2BG672700 Rh2CG635500 Rh2DG685900
rosa_wichuraiana	Rw2G054200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	791
Acc36I	ACCTGC	1 cut(s)	1166
AccB7I	CCANNNNNTGG	1 cut(s)	1103
AccBSI	CCGCTC	1 cut(s)	1046
AccI	GTMKAC	1 cut(s)	25
AccII	CGCG	1 cut(s)	477
AciI	CCGC	3 cut(s)	477, 776, 1046
AclI	AACGTT	1 cut(s)	813
AclWI	GGATC	3 cut(s)	281, 311, 1300
AcuI	CTGAAG	2 cut(s)	1251, 1268
AdeI	CACNNNGTG	1 cut(s)	929
AfaI	GTAC	1 cut(s)	889
AfiI	CCNNNNNNNGG	3 cut(s)	830, 957, 1103
AgsI	TTSAA	3 cut(s)	802, 1006, 1130
AjnI	CCWGG	2 cut(s)	419, 1159
AloI	GAACNNNNNNTCC	4 cut(s)	825, 831, 857, 863
AluBI	AGCT	8 cut(s)	127, 392, 535, 550, 798, 989, 1217, 1235
AluI	AGCT	8 cut(s)	127, 392, 535, 550, 798, 989, 1217, 1235
Alw21I	GWGCWC	1 cut(s)	925
Alw44I	GTGCAC	1 cut(s)	921
AlwI	GGATC	3 cut(s)	281, 311, 1300
Ama87I	CYCGRG	2 cut(s)	222, 721
AoxI	GGCC	1 cut(s)	821
ApaLI	GTGCAC	1 cut(s)	921
ApeKI	GCWGC	3 cut(s)	103, 632, 1232
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
AseI	ATTAAT	1 cut(s)	33
AspLEI	GCGC	1 cut(s)	477
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	775
AsuII	TTCGAA	1 cut(s)	992
AvaI	CYCGRG	2 cut(s)	222, 721
AxyI	CCTNAGG	1 cut(s)	759
BaeGI	GKGCMC	1 cut(s)	925
Bbv12I	GWGCWC	1 cut(s)	925
BbvI	GCAGC	3 cut(s)	90, 619, 1244
BccI	CCATC	4 cut(s)	587, 743, 1138, 1265
BceAI	ACGGC	1 cut(s)	702
BcgI	CGANNNNNNTGC	4 cut(s)	972, 1006, 1200, 1234
BciT130I	CCWGG	2 cut(s)	421, 1161
BciVI	GTATCC	1 cut(s)	29
BclI	TGATCA	2 cut(s)	129, 214
BcnI	CCSGG	1 cut(s)	301
BfaI	CTAG	2 cut(s)	884, 927
BfmI	CTRYAG	2 cut(s)	453, 697
BfuAI	ACCTGC	1 cut(s)	1166
BfuI	GTATCC	1 cut(s)	29
BglII	AGATCT	1 cut(s)	717
BisI	GCNGC	4 cut(s)	104, 633, 776, 1233
BlsI	GCNGC	4 cut(s)	105, 634, 777, 1234
Bme1390I	CCNGG	3 cut(s)	301, 421, 1161
BmeT110I	CYCGRG	2 cut(s)	222, 721
BmiI	GGNNCC	3 cut(s)	180, 690, 733
BmrFI	CCNGG	3 cut(s)	301, 421, 1161
BmsI	GCATC	3 cut(s)	324, 661, 1269
BpmI	CTGGAG	2 cut(s)	197, 333
Bpu14I	TTCGAA	1 cut(s)	992
BpuEI	CTTGAG	1 cut(s)	848
BpuMI	CCSGG	1 cut(s)	301
BsaBI	GATNNNNATC	1 cut(s)	1297
BsaXI	ACNNNNNCTCC	2 cut(s)	831, 861
Bsc4I	CCNNNNNNNGG	3 cut(s)	830, 957, 1103
Bse1I	ACTGG	1 cut(s)	984
Bse21I	CCTNAGG	1 cut(s)	759
Bse8I	GATNNNNATC	1 cut(s)	1297
BseBI	CCWGG	2 cut(s)	421, 1161
BseGI	GGATG	2 cut(s)	16, 1003
BseJI	GATNNNNATC	1 cut(s)	1297
BseLI	CCNNNNNNNGG	3 cut(s)	830, 957, 1103
BseMII	CTCAG	1 cut(s)	750
BseNI	ACTGG	1 cut(s)	984
BseSI	GKGCMC	1 cut(s)	925
BseXI	GCAGC	3 cut(s)	90, 619, 1244
BseYI	CCCAGC	1 cut(s)	392
Bsh1236I	CGCG	1 cut(s)	477
BshFI	GGCC	1 cut(s)	823
BsiHKAI	GWGCWC	1 cut(s)	925
BsiHKCI	CYCGRG	2 cut(s)	222, 721
BsiSI	CCGG	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	3 cut(s)	830, 957, 1103
BsmFI	GGGAC	1 cut(s)	316
BsnI	GGCC	1 cut(s)	823
BsoBI	CYCGRG	2 cut(s)	222, 721
Bsp119I	TTCGAA	1 cut(s)	992
Bsp1286I	GDGCHC	1 cut(s)	925
Bsp143I	GATC	7 cut(s)	129, 214, 286, 316, 717, 916, 1292
BspACI	CCGC	3 cut(s)	477, 776, 1046
BspANI	GGCC	1 cut(s)	823
BspCNI	CTCAG	1 cut(s)	751
BspFNI	CGCG	1 cut(s)	477
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	3 cut(s)	180, 690, 733
BspMAI	CTGCAG	1 cut(s)	701
BspMI	ACCTGC	1 cut(s)	1166
BspPI	GGATC	3 cut(s)	281, 311, 1300
BspT104I	TTCGAA	1 cut(s)	992
BsrBI	CCGCTC	1 cut(s)	1046
BsrI	ACTGG	1 cut(s)	984
BssMI	GATC	7 cut(s)	129, 214, 286, 316, 717, 916, 1292
BssNAI	GTATAC	1 cut(s)	26
Bst1107I	GTATAC	1 cut(s)	26
Bst2UI	CCWGG	2 cut(s)	421, 1161
Bst4CI	ACNGT	3 cut(s)	75, 232, 587
Bst6I	CTCTTC	1 cut(s)	721
BstBI	TTCGAA	1 cut(s)	992
BstC8I	GCNNGC	1 cut(s)	1055
BstDEI	CTNAG	2 cut(s)	759, 1302
BstEII	GGTNACC	1 cut(s)	1178
BstF5I	GGATG	2 cut(s)	16, 1003
BstFNI	CGCG	1 cut(s)	477
BstHHI	GCGC	1 cut(s)	477
BstKTI	GATC	7 cut(s)	132, 217, 289, 319, 720, 919, 1295
BstMBI	GATC	7 cut(s)	129, 214, 286, 316, 717, 916, 1292
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 1241
BstNI	CCWGG	2 cut(s)	421, 1161
BstPI	GGTNACC	1 cut(s)	1178
BstSCI	CCNGG	3 cut(s)	299, 419, 1159
BstSFI	CTRYAG	2 cut(s)	453, 697
BstSLI	GKGCMC	1 cut(s)	925
BstUI	CGCG	1 cut(s)	477
BstV1I	GCAGC	3 cut(s)	90, 619, 1244
BstX2I	RGATCY	2 cut(s)	316, 717
BstXI	CCANNNNNNTGG	3 cut(s)	189, 357, 1190
BstYI	RGATCY	2 cut(s)	316, 717
BstZ17I	GTATAC	1 cut(s)	26
Bsu36I	CCTNAGG	1 cut(s)	759
BsuI	GTATCC	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	823
BtsCI	GGATG	2 cut(s)	16, 1003
BtsIMutI	CAGTG	2 cut(s)	513, 789
BveI	ACCTGC	1 cut(s)	1166
Cac8I	GCNNGC	1 cut(s)	1055
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	1 cut(s)	477
CseI	GACGC	2 cut(s)	239, 458
Csp6I	GTAC	1 cut(s)	888
CviAII	CATG	3 cut(s)	545, 590, 904
CviQI	GTAC	1 cut(s)	888
DdeI	CTNAG	2 cut(s)	759, 1302
DpnI	GATC	7 cut(s)	131, 216, 288, 318, 719, 918, 1294
DpnII	GATC	7 cut(s)	129, 214, 286, 316, 717, 916, 1292
DraIII	CACNNNGTG	1 cut(s)	929
Eam1104I	CTCTTC	1 cut(s)	721
EarI	CTCTTC	1 cut(s)	721
Eco147I	AGGCCT	1 cut(s)	823
Eco57I	CTGAAG	2 cut(s)	1251, 1268
Eco81I	CCTNAGG	1 cut(s)	759
Eco88I	CYCGRG	2 cut(s)	222, 721
Eco91I	GGTNACC	1 cut(s)	1178
EcoO65I	GGTNACC	1 cut(s)	1178
EcoRII	CCWGG	2 cut(s)	419, 1159
FaeI	CATG	3 cut(s)	548, 593, 907
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	3 cut(s)	544, 589, 903
FbaI	TGATCA	2 cut(s)	129, 214
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	4 cut(s)	104, 633, 776, 1233
FokI	GGATG	2 cut(s)	23, 1010
Fsp4HI	GCNGC	4 cut(s)	104, 633, 776, 1233
FspBI	CTAG	2 cut(s)	884, 927
GlaI	GCGC	1 cut(s)	476
GluI	GCNGC	4 cut(s)	104, 633, 776, 1233
GsaI	CCCAGC	1 cut(s)	396
GsuI	CTGGAG	2 cut(s)	197, 333
HaeIII	GGCC	1 cut(s)	823
HapII	CCGG	1 cut(s)	300
HgaI	GACGC	2 cut(s)	239, 458
HhaI	GCGC	1 cut(s)	477
Hin1II	CATG	3 cut(s)	548, 593, 907
Hin6I	GCGC	1 cut(s)	475
HinP1I	GCGC	1 cut(s)	475
HindIII	AAGCTT	1 cut(s)	987
HinfI	GANTC	4 cut(s)	169, 323, 1118, 1259
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	1 cut(s)	775
Hpy166II	GTNNAC	5 cut(s)	26, 890, 923, 1069, 1193
Hpy188I	TCNGA	6 cut(s)	120, 168, 211, 610, 1024, 1270
Hpy8I	GTNNAC	5 cut(s)	26, 890, 923, 1069, 1193
HpyAV	CCTTC	5 cut(s)	418, 799, 988, 1000, 1043
HpyCH4III	ACNGT	3 cut(s)	75, 232, 587
HpyCH4IV	ACGT	1 cut(s)	813
HpyCH4V	TGCA	8 cut(s)	83, 505, 528, 699, 923, 1175, 1227, 1244
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 1241
HpyF3I	CTNAG	2 cut(s)	759, 1302
HpySE526I	ACGT	1 cut(s)	813
Hsp92II	CATG	3 cut(s)	548, 593, 907
HspAI	GCGC	1 cut(s)	475
Ksp22I	TGATCA	2 cut(s)	129, 214
Kzo9I	GATC	7 cut(s)	129, 214, 286, 316, 717, 916, 1292
LmnI	GCTCC	4 cut(s)	178, 694, 1043, 1083
Lsp1109I	GCAGC	3 cut(s)	90, 619, 1244
LweI	GCATC	3 cut(s)	324, 661, 1269
MaeI	CTAG	2 cut(s)	884, 927
MaeII	ACGT	1 cut(s)	813
MaeIII	GTNAC	4 cut(s)	48, 763, 929, 1178
MalI	GATC	7 cut(s)	131, 216, 288, 318, 719, 918, 1294
MbiI	CCGCTC	1 cut(s)	1046
MboI	GATC	7 cut(s)	129, 214, 286, 316, 717, 916, 1292
MflI	RGATCY	2 cut(s)	316, 717
MhlI	GDGCHC	1 cut(s)	925
MluCI	AATT	5 cut(s)	34, 399, 410, 613, 1011
MnlI	CCTC	7 cut(s)	259, 722, 754, 823, 834, 862, 1030
MseI	TTAA	4 cut(s)	33, 552, 816, 875
MslI	CAYNNNNRTG	2 cut(s)	187, 1188
MspA1I	CMGCKG	1 cut(s)	1235
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	3 cut(s)	301, 421, 1161
MvaI	CCWGG	2 cut(s)	421, 1161
MvnI	CGCG	1 cut(s)	477
MwoI	GCNNNNNNNGC	2 cut(s)	103, 1241
NciI	CCSGG	1 cut(s)	301
NdeII	GATC	7 cut(s)	129, 214, 286, 316, 717, 916, 1292
NlaIII	CATG	3 cut(s)	548, 593, 907
NlaIV	GGNNCC	3 cut(s)	180, 690, 733
NmuCI	GTSAC	2 cut(s)	763, 929
NspV	TTCGAA	1 cut(s)	992
PaeR7I	CTCGAG	1 cut(s)	721
PagI	TCATGA	1 cut(s)	589
PceI	AGGCCT	1 cut(s)	823
PfeI	GAWTC	4 cut(s)	169, 323, 1118, 1259
PflMI	CCANNNNNTGG	1 cut(s)	1103
PfoI	TCCNGGA	1 cut(s)	419
PkrI	GCNGC	4 cut(s)	105, 634, 777, 1234
PshBI	ATTAAT	1 cut(s)	33
PsiI	TTATAA	1 cut(s)	791
Psp1406I	AACGTT	1 cut(s)	813
Psp6I	CCWGG	2 cut(s)	419, 1159
PspEI	GGTNACC	1 cut(s)	1178
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	2 cut(s)	419, 1159
PspN4I	GGNNCC	3 cut(s)	180, 690, 733
PstI	CTGCAG	1 cut(s)	701
PsuI	RGATCY	2 cut(s)	316, 717
PvuII	CAGCTG	1 cut(s)	1235
RsaI	GTAC	1 cut(s)	889
RsaNI	GTAC	1 cut(s)	888
RseI	CAYNNNNRTG	2 cut(s)	187, 1188
SaqAI	TTAA	4 cut(s)	33, 552, 816, 875
SatI	GCNGC	4 cut(s)	104, 633, 776, 1233
Sau3AI	GATC	7 cut(s)	129, 214, 286, 316, 717, 916, 1292
ScrFI	CCNGG	3 cut(s)	301, 421, 1161
SduI	GDGCHC	1 cut(s)	925
SfaNI	GCATC	3 cut(s)	324, 661, 1269
SfcI	CTRYAG	2 cut(s)	453, 697
Sfr274I	CTCGAG	1 cut(s)	721
SfuI	TTCGAA	1 cut(s)	992
SlaI	CTCGAG	1 cut(s)	721
SmiMI	CAYNNNNRTG	2 cut(s)	187, 1188
SmlI	CTYRAG	2 cut(s)	721, 827
SmoI	CTYRAG	2 cut(s)	721, 827
Sse9I	AATT	5 cut(s)	34, 399, 410, 613, 1011
SseBI	AGGCCT	1 cut(s)	823
SsiI	CCGC	3 cut(s)	477, 776, 1046
SspMI	CTAG	2 cut(s)	884, 927
StuI	AGGCCT	1 cut(s)	823
StyD4I	CCNGG	3 cut(s)	299, 419, 1159
TaaI	ACNGT	3 cut(s)	75, 232, 587
TaiI	ACGT	1 cut(s)	816
TaqI	TCGA	5 cut(s)	332, 722, 967, 992, 1137
TasI	AATT	5 cut(s)	34, 399, 410, 613, 1011
TauI	GCSGC	1 cut(s)	778
TfiI	GAWTC	4 cut(s)	169, 323, 1118, 1259
Tru1I	TTAA	4 cut(s)	33, 552, 816, 875
Tru9I	TTAA	4 cut(s)	33, 552, 816, 875
TscAI	CASTG	2 cut(s)	520, 789
TseFI	GTSAC	2 cut(s)	763, 929
TseI	GCWGC	3 cut(s)	103, 632, 1232
Tsp45I	GTSAC	2 cut(s)	763, 929
TspDTI	ATGAA	2 cut(s)	651, 728
TspGWI	ACGGA	1 cut(s)	11
TspRI	CASTG	2 cut(s)	520, 789
Van91I	CCANNNNNTGG	1 cut(s)	1103
VneI	GTGCAC	1 cut(s)	921
VspI	ATTAAT	1 cut(s)	33
XhoI	CTCGAG	1 cut(s)	721
XmiI	GTMKAC	1 cut(s)	25
XspI	CTAG	2 cut(s)	884, 927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.