Rroxscaffold_2G00077620

Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
1144318 .. 1153065
8748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00077620.1

Sequence Viewer

Length: 1557 bp
ATGAAGGACTACGGGTCGCGCGCAAAGGCGCAATTCTCGCGGCAAGAACACCACAGCCCACGTACGATATTGCATGCCAGAGATGATGCCCTTCGCTTACTGTGCTCTGTGAAAAGAGTGGCTGTTGTTGGCGCTGGTGTTAGTGGGCTTGCTGCGGCCTACAAGTTGAAATCACATGGTTTCGACGTTACGGTACTCGAAGCCGAGGGAAGAGCTGGAGGGAAGTTGAGAAGTGTGTCGCATAATGGTCTTGTTTGGGATGAAGGTGCAAATACAATGACTGAGAGTGAAGCTGAGGTACAAACTTTGCTTGATAACCTGGGGCTTCGAGAAAAGCAGCAATTTGTAAGGAATGCTTCCGATTTCACAGAACAAACGGTATGTTGCAAGGAATGGGTCGCCTGTGCTGTTTCAGATTCTTCTGGAGCCATATTTGTGGAAGAAAAAAGAGTTTCCGATGATCACACCCAAGAAAGTGTGGGTGGGTTCTTTCAGCGTCATTTTGGGAAAGAGGTCGTTGATTATCTCATTGATCCCTTTGTTGCCGGGACAAGTGCTGGAGATCCTGAATCTCTTTCGATGCGACATTCTTTTCCGGAGTTATGGAACATAGAAAAAAGGTATGGTTCGGTAATAGCTGGGGCAATTCAGTCAAAATTATCTTCCAGGAAGGAAAAAAGTAGAGAAACAAAGGGTTCTGTAGAGAAAGGAAAGCGTCAGCGCGGTTCTTTTTCCTTTCAGGGTGTGCAGACACTCACTGATACATTGTGCAAACAGCTTGGCAAACATGAGCTTAAACTGAACTCAAAGGTTTTGTCATTATCTTACAGTCATGATGGGAACACTACATCAGAAAATTGGTCAGTTTCCTGTGTTGCTAATGATGACAAGCATTCACAAAGTTCATCTGTTGATGCTATAATCCTGACGGCTCCACTCTGCAGTATCAAAGAAATGAAGATCTCAAGAAGAGGAACCATCTTCCCACTTGATTTTCTTCCTGAGGTGACTTATATGCCGCTATCAGTGATAATAACCAGCTTCAAGAAGGAAAACGTTAAAAGGCCTCTTGAGGGATTTGGAGTTCTTGTTCCCTCCAAAGAGCAGGAAAATGGCTTAAAAACACTAGGTACACTATTTTCTTCCATGATGTTTCCAGATCGTGCACCTAGTGACCAATATCTTTACACTACCTTTGTTGGGGGAAGTCGAAACAAGGAACTGGCAAAAGCTTCAAAGGATGAGTTGAAGCAAATTGTTACCTCTGACATAAGGCAACTATTGGGAGTGGAAGGCGAGCCGACATTTGTGAACCATTACCATTGGAGCAAAGCATTTCCATTGTATGGGCGTAACTACGATTCAGTCATTGAAGCAATCGACCAGATGGAGAAAAATCTTCCTGGTTTATTCTATGCAGGTAACCATAGGGGTGGACTGTCTGTTGGCAAAGCAATAGCTTCCGGGTGCAAAGCAGCTGAACTTGTAATCTCCTATCTGGAATCTTCTTCAGATGGCAAGATGCTTCAGCAAGGATCGTCATCTAGAAGTAGCTAG

Protein Analysis

518

Amino Acids

56.95

Weight (kDa)

8.26

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 39 - 74 2.6e-08 FAD dependent oxidoreductase
FAD_binding_2 PF00890 40 - 93 1.4e-06 FAD binding domain
NAD_binding_8 PF13450 42 - 106 5.9e-15 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 47 - 497 1.9e-70 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1409
AccB7I CCANNNNNTGG 1 cut(s) 1346
AccII CGCG 4 cut(s) 19, 21, 40, 723
AccIII TCCGGA 1 cut(s) 595
AciI CCGC 4 cut(s) 40, 155, 723, 1019
AclI AACGTT 1 cut(s) 1056
AclWI GGATC 3 cut(s) 527, 557, 1543
AcuI CTGAAG 2 cut(s) 1494, 1511
AdeI CACNNNGTG 1 cut(s) 1172
AfaI GTAC 4 cut(s) 64, 195, 300, 1132
AfiI CCNNNNNNNGG 3 cut(s) 1073, 1200, 1346
AgsI TTSAA 5 cut(s) 169, 1045, 1236, 1249, 1373
AhdI GACNNNNNGTC 1 cut(s) 13
AjnI CCWGG 3 cut(s) 318, 665, 1402
AloI GAACNNNNNNTCC 4 cut(s) 1068, 1074, 1100, 1106
Alw21I GWGCWC 2 cut(s) 107, 1168
Alw44I GTGCAC 1 cut(s) 1164
AlwI GGATC 3 cut(s) 527, 557, 1543
Aor13HI TCCGGA 1 cut(s) 595
AoxI GGCC 2 cut(s) 156, 1064
ApaLI GTGCAC 1 cut(s) 1164
ApeKI GCWGC 3 cut(s) 152, 337, 1475
ArsI GACNNNNNNTTYG 2 cut(s) 800, 832
AspLEI GCGC 5 cut(s) 21, 23, 31, 134, 723
AsuC2I CCSGG 2 cut(s) 547, 1465
AsuHPI GGTGA 1 cut(s) 1018
AxyI CCTNAGG 1 cut(s) 1002
BaeGI GKGCMC 1 cut(s) 1168
BarI GAAGNNNNNNTAC 2 cut(s) 282, 314
Bbv12I GWGCWC 2 cut(s) 107, 1168
BbvCI CCTCAGC 1 cut(s) 294
BbvI GCAGC 3 cut(s) 139, 349, 1487
BccI CCATC 4 cut(s) 830, 986, 1381, 1508
BceAI ACGGC 1 cut(s) 945
BciT130I CCWGG 3 cut(s) 320, 667, 1404
BclI TGATCA 1 cut(s) 460
BcnI CCSGG 2 cut(s) 547, 1465
BfaI CTAG 4 cut(s) 1127, 1170, 1545, 1555
BfmI CTRYAG 2 cut(s) 699, 940
BfoI RGCGCY 1 cut(s) 135
BfuAI ACCTGC 1 cut(s) 1409
BglII AGATCT 1 cut(s) 960
BisI GCNGC 6 cut(s) 41, 153, 156, 338, 1019, 1476
BlsI GCNGC 6 cut(s) 42, 154, 157, 339, 1020, 1477
Bme1390I CCNGG 5 cut(s) 320, 547, 667, 1404, 1465
BmeRI GACNNNNNGTC 1 cut(s) 13
BmiI GGNNCC 3 cut(s) 427, 933, 976
BmrFI CCNGG 5 cut(s) 320, 547, 667, 1404, 1465
BmsI GCATC 4 cut(s) 76, 570, 904, 1512
BpmI CTGGAG 3 cut(s) 237, 444, 579
Bpu10I CCTNAGC 1 cut(s) 294
BpuEI CTTGAG 2 cut(s) 949, 1091
BpuMI CCSGG 2 cut(s) 547, 1465
BsaAI YACGTR 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 1540
BsaJI CCNNGG 2 cut(s) 204, 319
BsaWI WCCGGW 1 cut(s) 595
BsaXI ACNNNNNCTCC 2 cut(s) 1074, 1104
Bsc4I CCNNNNNNNGG 3 cut(s) 1073, 1200, 1346
Bse1I ACTGG 1 cut(s) 1227
Bse21I CCTNAGG 1 cut(s) 1002
Bse8I GATNNNNATC 1 cut(s) 1540
BseAI TCCGGA 1 cut(s) 595
BseBI CCWGG 3 cut(s) 320, 667, 1404
BseDI CCNNGG 2 cut(s) 204, 319
BseGI GGATG 2 cut(s) 265, 1246
BseJI GATNNNNATC 1 cut(s) 1540
BseLI CCNNNNNNNGG 3 cut(s) 1073, 1200, 1346
BseMII CTCAG 3 cut(s) 273, 285, 993
BseNI ACTGG 1 cut(s) 1227
BsePI GCGCGC 1 cut(s) 19
BseSI GKGCMC 1 cut(s) 1168
BseXI GCAGC 3 cut(s) 139, 349, 1487
BseYI CCCAGC 1 cut(s) 638
BsgI GTGCAG 1 cut(s) 767
Bsh1236I CGCG 4 cut(s) 19, 21, 40, 723
BshFI GGCC 2 cut(s) 158, 1066
BsiHKAI GWGCWC 2 cut(s) 107, 1168
BsiSI CCGG 3 cut(s) 546, 596, 1464
BsiWI CGTACG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 562
BslI CCNNNNNNNGG 3 cut(s) 1073, 1200, 1346
BsmFI GGGAC 1 cut(s) 562
BsmI GAATGC 2 cut(s) 358, 892
BsnI GGCC 2 cut(s) 158, 1066
Bsp1286I GDGCHC 2 cut(s) 107, 1168
Bsp13I TCCGGA 1 cut(s) 595
Bsp143I GATC 6 cut(s) 460, 532, 562, 960, 1159, 1535
BspACI CCGC 4 cut(s) 40, 155, 723, 1019
BspANI GGCC 2 cut(s) 158, 1066
BspCNI CTCAG 3 cut(s) 274, 286, 994
BspEI TCCGGA 1 cut(s) 595
BspFNI CGCG 4 cut(s) 19, 21, 40, 723
BspHI TCATGA 1 cut(s) 832
BspLI GGNNCC 3 cut(s) 427, 933, 976
BspMAI CTGCAG 1 cut(s) 944
BspMI ACCTGC 1 cut(s) 1409
BspPI GGATC 3 cut(s) 527, 557, 1543
BspQI GCTCTTC 1 cut(s) 205
BsrI ACTGG 1 cut(s) 1227
BssECI CCNNGG 2 cut(s) 204, 319
BssHII GCGCGC 1 cut(s) 19
BssMI GATC 6 cut(s) 460, 532, 562, 960, 1159, 1535
Bst2UI CCWGG 3 cut(s) 320, 667, 1404
Bst4CI ACNGT 5 cut(s) 102, 193, 379, 830, 1440
Bst6I CTCTTC 2 cut(s) 205, 964
BstBAI YACGTR 1 cut(s) 62
BstC8I GCNNGC 4 cut(s) 21, 75, 150, 1298
BstDEI CTNAG 3 cut(s) 282, 294, 1002
BstEII GGTNACC 1 cut(s) 1421
BstF5I GGATG 2 cut(s) 265, 1246
BstFNI CGCG 4 cut(s) 19, 21, 40, 723
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 5 cut(s) 21, 23, 31, 134, 723
BstKTI GATC 6 cut(s) 463, 535, 565, 963, 1162, 1538
BstMBI GATC 6 cut(s) 460, 532, 562, 960, 1159, 1535
BstMWI GCNNNNNNNGC 2 cut(s) 37, 102
BstNI CCWGG 3 cut(s) 320, 667, 1404
BstNSI RCATGY 1 cut(s) 77
BstPI GGTNACC 1 cut(s) 1421
BstSCI CCNGG 5 cut(s) 318, 545, 665, 1402, 1463
BstSFI CTRYAG 2 cut(s) 699, 940
BstSLI GKGCMC 1 cut(s) 1168
BstUI CGCG 4 cut(s) 19, 21, 40, 723
BstV1I GCAGC 3 cut(s) 139, 349, 1487
BstX2I RGATCY 2 cut(s) 562, 960
BstXI CCANNNNNNTGG 2 cut(s) 436, 1433
BstYI RGATCY 2 cut(s) 562, 960
Bsu36I CCTNAGG 1 cut(s) 1002
BsuRI GGCC 2 cut(s) 158, 1066
BtsCI GGATG 2 cut(s) 265, 1246
BtsIMutI CAGTG 2 cut(s) 756, 1032
BveI ACCTGC 1 cut(s) 1409
Cac8I GCNNGC 4 cut(s) 21, 75, 150, 1298
CciI TCATGA 1 cut(s) 832
CfoI GCGC 5 cut(s) 21, 23, 31, 134, 723
CseI GACGC 2 cut(s) 485, 704
Csp6I GTAC 4 cut(s) 63, 194, 299, 1131
CviAII CATG 5 cut(s) 74, 176, 788, 833, 1147
CviQI GTAC 4 cut(s) 63, 194, 299, 1131
DdeI CTNAG 3 cut(s) 282, 294, 1002
DpnI GATC 6 cut(s) 462, 534, 564, 962, 1161, 1537
DpnII GATC 6 cut(s) 460, 532, 562, 960, 1159, 1535
DraIII CACNNNGTG 1 cut(s) 1172
DriI GACNNNNNGTC 1 cut(s) 13
Eam1104I CTCTTC 2 cut(s) 205, 964
Eam1105I GACNNNNNGTC 1 cut(s) 13
EarI CTCTTC 2 cut(s) 205, 964
Eco147I AGGCCT 1 cut(s) 1066
Eco57I CTGAAG 2 cut(s) 1494, 1511
Eco81I CCTNAGG 1 cut(s) 1002
Eco91I GGTNACC 1 cut(s) 1421
EcoO65I GGTNACC 1 cut(s) 1421
EcoRII CCWGG 3 cut(s) 318, 665, 1402
FaeI CATG 5 cut(s) 77, 179, 791, 836, 1150
FalI AAGNNNNNCTT 2 cut(s) 340, 372
FaqI GGGAC 1 cut(s) 562
FatI CATG 5 cut(s) 73, 175, 787, 832, 1146
FbaI TGATCA 1 cut(s) 460
Fnu4HI GCNGC 6 cut(s) 41, 153, 156, 338, 1019, 1476
FokI GGATG 2 cut(s) 272, 1253
Fsp4HI GCNGC 6 cut(s) 41, 153, 156, 338, 1019, 1476
FspBI CTAG 4 cut(s) 1127, 1170, 1545, 1555
GlaI GCGC 5 cut(s) 20, 22, 30, 133, 722
GluI GCNGC 6 cut(s) 41, 153, 156, 338, 1019, 1476
GsaI CCCAGC 1 cut(s) 642
GsuI CTGGAG 3 cut(s) 237, 444, 579
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 2 cut(s) 158, 1066
HapII CCGG 3 cut(s) 546, 596, 1464
HgaI GACGC 2 cut(s) 485, 704
HhaI GCGC 5 cut(s) 21, 23, 31, 134, 723
Hin1II CATG 5 cut(s) 77, 179, 791, 836, 1150
Hin6I GCGC 5 cut(s) 19, 21, 29, 132, 721
HinP1I GCGC 5 cut(s) 19, 21, 29, 132, 721
HindIII AAGCTT 1 cut(s) 1230
HinfI GANTC 4 cut(s) 416, 569, 1361, 1502
HpaII CCGG 3 cut(s) 546, 596, 1464
HphI GGTGA 1 cut(s) 1018
Hpy166II GTNNAC 4 cut(s) 1133, 1166, 1312, 1436
Hpy188I TCNGA 6 cut(s) 361, 415, 457, 853, 1267, 1513
Hpy8I GTNNAC 4 cut(s) 1133, 1166, 1312, 1436
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 5 cut(s) 101, 257, 664, 1042, 1286
HpyCH4III ACNGT 5 cut(s) 102, 193, 379, 830, 1440
HpyCH4IV ACGT 3 cut(s) 61, 186, 1056
HpyCH4V TGCA 9 cut(s) 73, 269, 387, 748, 771, 942, 1166, 1418, 1470
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 102
HpyF3I CTNAG 3 cut(s) 282, 294, 1002
HpySE526I ACGT 3 cut(s) 61, 186, 1056
Hsp92II CATG 5 cut(s) 77, 179, 791, 836, 1150
HspAI GCGC 5 cut(s) 19, 21, 29, 132, 721
Kpn2I TCCGGA 1 cut(s) 595
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 6 cut(s) 460, 532, 562, 960, 1159, 1535
LguI GCTCTTC 1 cut(s) 205
LmnI GCTCC 3 cut(s) 425, 937, 1326
Lsp1109I GCAGC 3 cut(s) 139, 349, 1487
LweI GCATC 4 cut(s) 76, 570, 904, 1512
MaeI CTAG 4 cut(s) 1127, 1170, 1545, 1555
MaeII ACGT 3 cut(s) 61, 186, 1056
MaeIII GTNAC 6 cut(s) 187, 1006, 1172, 1258, 1352, 1421
MalI GATC 6 cut(s) 462, 534, 564, 962, 1161, 1537
MboI GATC 6 cut(s) 460, 532, 562, 960, 1159, 1535
MflI RGATCY 2 cut(s) 562, 960
MhlI GDGCHC 2 cut(s) 107, 1168
MluCI AATT 6 cut(s) 32, 341, 645, 656, 856, 1254
MroI TCCGGA 1 cut(s) 595
MseI TTAA 3 cut(s) 795, 1059, 1118
MslI CAYNNNNRTG 2 cut(s) 434, 1431
MspA1I CMGCKG 1 cut(s) 1478
MspI CCGG 3 cut(s) 546, 596, 1464
MspR9I CCNGG 5 cut(s) 320, 547, 667, 1404, 1465
Mva1269I GAATGC 2 cut(s) 358, 892
MvaI CCWGG 3 cut(s) 320, 667, 1404
MvnI CGCG 4 cut(s) 19, 21, 40, 723
MwoI GCNNNNNNNGC 2 cut(s) 37, 102
NciI CCSGG 2 cut(s) 547, 1465
NdeII GATC 6 cut(s) 460, 532, 562, 960, 1159, 1535
NlaIII CATG 5 cut(s) 77, 179, 791, 836, 1150
NlaIV GGNNCC 3 cut(s) 427, 933, 976
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 2 cut(s) 1006, 1172
NspI RCATGY 1 cut(s) 77
PaeI GCATGC 1 cut(s) 77
PagI TCATGA 1 cut(s) 832
PauI GCGCGC 1 cut(s) 19
PceI AGGCCT 1 cut(s) 1066
PciSI GCTCTTC 1 cut(s) 205
PctI GAATGC 2 cut(s) 358, 892
PfeI GAWTC 4 cut(s) 416, 569, 1361, 1502
Pfl23II CGTACG 1 cut(s) 62
PflMI CCANNNNNTGG 1 cut(s) 1346
PfoI TCCNGGA 1 cut(s) 665
PkrI GCNGC 6 cut(s) 42, 154, 157, 339, 1020, 1477
Ppu21I YACGTR 1 cut(s) 62
Psp1406I AACGTT 1 cut(s) 1056
Psp6I CCWGG 3 cut(s) 318, 665, 1402
PspEI GGTNACC 1 cut(s) 1421
PspFI CCCAGC 1 cut(s) 638
PspGI CCWGG 3 cut(s) 318, 665, 1402
PspLI CGTACG 1 cut(s) 62
PspN4I GGNNCC 3 cut(s) 427, 933, 976
PstI CTGCAG 1 cut(s) 944
PsuI RGATCY 2 cut(s) 562, 960
PteI GCGCGC 1 cut(s) 19
PvuII CAGCTG 1 cut(s) 1478
RsaI GTAC 4 cut(s) 64, 195, 300, 1132
RsaNI GTAC 4 cut(s) 63, 194, 299, 1131
RseI CAYNNNNRTG 2 cut(s) 434, 1431
SapI GCTCTTC 1 cut(s) 205
SaqAI TTAA 3 cut(s) 795, 1059, 1118
SatI GCNGC 6 cut(s) 41, 153, 156, 338, 1019, 1476
Sau3AI GATC 6 cut(s) 460, 532, 562, 960, 1159, 1535
ScrFI CCNGG 5 cut(s) 320, 547, 667, 1404, 1465
SduI GDGCHC 2 cut(s) 107, 1168
SfaNI GCATC 4 cut(s) 76, 570, 904, 1512
SfcI CTRYAG 2 cut(s) 699, 940
SmiMI CAYNNNNRTG 2 cut(s) 434, 1431
SmlI CTYRAG 2 cut(s) 964, 1070
SmoI CTYRAG 2 cut(s) 964, 1070
SphI GCATGC 1 cut(s) 77
Sse9I AATT 6 cut(s) 32, 341, 645, 656, 856, 1254
SseBI AGGCCT 1 cut(s) 1066
SsiI CCGC 4 cut(s) 40, 155, 723, 1019
SspMI CTAG 4 cut(s) 1127, 1170, 1545, 1555
StuI AGGCCT 1 cut(s) 1066
StyD4I CCNGG 5 cut(s) 318, 545, 665, 1402, 1463
TaaI ACNGT 5 cut(s) 102, 193, 379, 830, 1440
TaiI ACGT 3 cut(s) 64, 189, 1059
TaqI TCGA 6 cut(s) 183, 198, 328, 578, 1210, 1380
TasI AATT 6 cut(s) 32, 341, 645, 656, 856, 1254
TauI GCSGC 3 cut(s) 43, 158, 1021
TfiI GAWTC 4 cut(s) 416, 569, 1361, 1502
Tru1I TTAA 3 cut(s) 795, 1059, 1118
Tru9I TTAA 3 cut(s) 795, 1059, 1118
TscAI CASTG 2 cut(s) 763, 1032
TseFI GTSAC 2 cut(s) 1006, 1172
TseI GCWGC 3 cut(s) 152, 337, 1475
Tsp45I GTSAC 2 cut(s) 1006, 1172
TspDTI ATGAA 4 cut(s) 17, 276, 894, 971
TspRI CASTG 2 cut(s) 763, 1032
Van91I CCANNNNNTGG 1 cut(s) 1346
VneI GTGCAC 1 cut(s) 1164
XbaI TCTAGA 1 cut(s) 1544
XceI RCATGY 1 cut(s) 77
XspI CTAG 4 cut(s) 1127, 1170, 1545, 1555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.