RchiOBHm_Chr2g0174871

Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
87333388 .. 87338497
5110 bp
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UTR
Exon/CDS
Intron
PRQ54201

Sequence Viewer

Length: 1536 bp
ATGGCCTCGCCTTCCCCTGGAGATAAGCACAGCTCTGTGAAAAGAGTGGCTGTTGTTGGCGCTGGTGTTAGTGGGCTTGCTGCGGCCTACAAGTTGAAATCACATGGTTTCGACGTTACGGTACTCGAAGCCGAGGGAAGAGCTGGAGGGAAGTTGAGAAGTGTGTCGTGTAATGGTCTTGTTTGGGATGAAGGTGCAAATACAATGACTGAGAGTGAAGCTGAGGTTCAGACTTTGCTTGATAATCTGGGGCTTCGAGAAAAGCAGCAATTTCCGATTTCACAGAACAAACGGTATGTTGCAAGGAATGGGTCGCCTGTGCTGCTACCTACCAATCCGATTGAGCTGATCAAGAGCAACTTTCTTTCTACAAAATCAAAGTTTCAGATTCTTCTGGAGCCATATTTGTGGAAGAAAAAAAGAGTTTCCGATGATCACACCCGAGAAACTGTGGGTGGGTTCTTTCAGCGTCATTTTGGGAAAGAGGTCGTTGATTATCTCATTGATCCCTTTGTTGCCGGGACAAGTGCTGGAGATCCTGAATCTCTTTCGATGCCACATTCTTTTCCAGAGTTATGGAACATAGAAAAAAGGTATGGTTCGGTTATAGCTGGGGCAATTCAGTCAAAATTATCTTCCAGGAAGGAAAAAGGTAGAGAAACAAAGGGTTCTGTAGAGAAAGGAAAGCGTCAGCGCGGTTCTTTTTCCTTTCAGGGTGGTATGCAGACACTCACTGATACATTGTGCAAACAGCTTGGCAAACATGAGCTTAAACTGAACTCAAAGGTTTTGTCATTATCTTACAGTCATGATGGGAACACCACATCAGAAAATTGGTCGGTTTCCTGTGCTGCTAATAATGACAAGCATTTACAAAGTTCATCTGTTGATGCTATAATCCTGACGGCTCCACTCTGCAGTATCAAAGAAATGAAGATCTCGAGAAGAGGAACCATCTTCCCACTTGATTTTCTTCCTGAGGTGACTTATATGCCGCTATCAGTGATTATAACCAGCTTCAAGAAGGAAAACGTTAAAAGGCCTCTTGAGGGATTTGGAGTTCTTGTTCCCTCCAAAGAGCAGGAAAATGGCTTAAAAACGCTAGGTACACTATTTTCTTCCATGATGTTTCCAGATCGTGCACCTAGTGACCAATATCTTTACACTACCTTTGTTGGGGAAGTCGAAACAAGGAACTGGCAAAAGCTTCGAAGTATGGGAACCTTGGATGAGTTGAAGGAAATTGTTTCCTCTGACATAAGGCAACTTTTGGGAGCGGAAGGCGAGCCGACATTTGTGAACCATTACCATTGGAGCAAAGCATTTCCATTGTATGGGCATAACTACGATTCAGTCATTGAAGCAATCGAGCAGATGGAGAAAAATCTTCCTGGTTTATTCTATGCAGGTAACCATAGGGGTGGACTATCTGTTGGCAAAGCAATAGCTTCGGGGTGCAAAGCAGCTGAACTTGCAATCTCCTATCTGGAATCTTCTTCAGATGGCAAGATGCTTCAGCAAGGATCGTCATCTTAG

Protein Analysis

511

Amino Acids

56.21

Weight (kDa)

8.79

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 15 - 50 5.7e-08 FAD dependent oxidoreductase
FAD_binding_2 PF00890 16 - 69 4.5e-07 FAD binding domain
NAD_binding_8 PF13450 18 - 82 6.1e-14 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 23 - 491 2.8e-72 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1010
Acc36I ACCTGC 1 cut(s) 1397
AccB7I CCANNNNNTGG 1 cut(s) 1334
AccBSI CCGCTC 1 cut(s) 1277
AccII CGCG 1 cut(s) 696
AciI CCGC 4 cut(s) 83, 696, 995, 1277
AclI AACGTT 1 cut(s) 1032
AclWI GGATC 3 cut(s) 500, 530, 1531
AcuI CTGAAG 2 cut(s) 1482, 1499
AdeI CACNNNGTG 1 cut(s) 1148
AfaI GTAC 2 cut(s) 123, 1108
AfiI CCNNNNNNNGG 4 cut(s) 17, 1049, 1176, 1334
AgsI TTSAA 4 cut(s) 97, 1021, 1237, 1361
AjnI CCWGG 3 cut(s) 16, 638, 1390
AloI GAACNNNNNNTCC 4 cut(s) 1044, 1050, 1076, 1082
Alw21I GWGCWC 1 cut(s) 1144
Alw44I GTGCAC 1 cut(s) 1140
AlwI GGATC 3 cut(s) 500, 530, 1531
Ama87I CYCGRG 2 cut(s) 441, 940
AoxI GGCC 3 cut(s) 3, 84, 1040
ApaLI GTGCAC 1 cut(s) 1140
ApeKI GCWGC 5 cut(s) 80, 265, 322, 851, 1463
ArsI GACNNNNNNTTYG 2 cut(s) 776, 808
AspLEI GCGC 2 cut(s) 62, 696
AsuC2I CCSGG 1 cut(s) 520
AsuHPI GGTGA 1 cut(s) 994
AsuII TTCGAA 1 cut(s) 1210
AvaI CYCGRG 2 cut(s) 441, 940
AxyI CCTNAGG 1 cut(s) 978
BaeGI GKGCMC 1 cut(s) 1144
Bbv12I GWGCWC 1 cut(s) 1144
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 5 cut(s) 67, 277, 309, 838, 1475
BccI CCATC 4 cut(s) 806, 962, 1369, 1496
BceAI ACGGC 1 cut(s) 921
BcgI CGANNNNNNTGC 4 cut(s) 1190, 1224, 1431, 1465
BciT130I CCWGG 3 cut(s) 18, 640, 1392
BclI TGATCA 2 cut(s) 348, 433
BcnI CCSGG 1 cut(s) 520
BfaI CTAG 2 cut(s) 1103, 1146
BfmI CTRYAG 2 cut(s) 672, 916
BfoI RGCGCY 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 1397
BglII AGATCT 1 cut(s) 936
BisI GCNGC 7 cut(s) 81, 84, 266, 323, 852, 995, 1464
BlsI GCNGC 7 cut(s) 82, 85, 267, 324, 853, 996, 1465
Bme1390I CCNGG 4 cut(s) 18, 520, 640, 1392
BmeT110I CYCGRG 2 cut(s) 441, 940
BmiI GGNNCC 4 cut(s) 399, 909, 952, 1222
BmrFI CCNGG 4 cut(s) 18, 520, 640, 1392
BmsI GCATC 3 cut(s) 543, 880, 1500
BpmI CTGGAG 4 cut(s) 39, 165, 416, 552
Bpu10I CCTNAGC 1 cut(s) 222
Bpu14I TTCGAA 1 cut(s) 1210
BpuEI CTTGAG 1 cut(s) 1067
BpuMI CCSGG 1 cut(s) 520
BsaBI GATNNNNATC 1 cut(s) 1528
BsaJI CCNNGG 3 cut(s) 16, 132, 1224
BsaXI ACNNNNNCTCC 2 cut(s) 1050, 1080
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 1049, 1176, 1334
Bse1I ACTGG 1 cut(s) 1202
Bse21I CCTNAGG 1 cut(s) 978
Bse8I GATNNNNATC 1 cut(s) 1528
BseBI CCWGG 3 cut(s) 18, 640, 1392
BseDI CCNNGG 3 cut(s) 16, 132, 1224
BseGI GGATG 2 cut(s) 193, 1234
BseJI GATNNNNATC 1 cut(s) 1528
BseLI CCNNNNNNNGG 4 cut(s) 17, 1049, 1176, 1334
BseMII CTCAG 3 cut(s) 201, 213, 969
BseNI ACTGG 1 cut(s) 1202
BseSI GKGCMC 1 cut(s) 1144
BseXI GCAGC 5 cut(s) 67, 277, 309, 838, 1475
BseYI CCCAGC 1 cut(s) 611
Bsh1236I CGCG 1 cut(s) 696
BshFI GGCC 3 cut(s) 5, 86, 1042
BsiHKAI GWGCWC 1 cut(s) 1144
BsiHKCI CYCGRG 2 cut(s) 441, 940
BsiSI CCGG 1 cut(s) 519
BslFI GGGAC 1 cut(s) 535
BslI CCNNNNNNNGG 4 cut(s) 17, 1049, 1176, 1334
BsmFI GGGAC 1 cut(s) 535
BsnI GGCC 3 cut(s) 5, 86, 1042
BsoBI CYCGRG 2 cut(s) 441, 940
Bsp119I TTCGAA 1 cut(s) 1210
Bsp1286I GDGCHC 1 cut(s) 1144
Bsp143I GATC 7 cut(s) 348, 433, 505, 535, 936, 1135, 1523
BspACI CCGC 4 cut(s) 83, 696, 995, 1277
BspANI GGCC 3 cut(s) 5, 86, 1042
BspCNI CTCAG 3 cut(s) 202, 214, 970
BspFNI CGCG 1 cut(s) 696
BspHI TCATGA 1 cut(s) 808
BspLI GGNNCC 4 cut(s) 399, 909, 952, 1222
BspMAI CTGCAG 1 cut(s) 920
BspMI ACCTGC 1 cut(s) 1397
BspPI GGATC 3 cut(s) 500, 530, 1531
BspQI GCTCTTC 1 cut(s) 133
BspT104I TTCGAA 1 cut(s) 1210
BsrBI CCGCTC 1 cut(s) 1277
BsrI ACTGG 1 cut(s) 1202
BssECI CCNNGG 3 cut(s) 16, 132, 1224
BssMI GATC 7 cut(s) 348, 433, 505, 535, 936, 1135, 1523
BssT1I CCWWGG 1 cut(s) 1224
Bst2UI CCWGG 3 cut(s) 18, 640, 1392
Bst4CI ACNGT 4 cut(s) 121, 294, 451, 806
Bst6I CTCTTC 2 cut(s) 133, 940
BstBI TTCGAA 1 cut(s) 1210
BstC8I GCNNGC 2 cut(s) 78, 1286
BstDEI CTNAG 4 cut(s) 210, 222, 978, 1533
BstEII GGTNACC 1 cut(s) 1409
BstF5I GGATG 2 cut(s) 193, 1234
BstFNI CGCG 1 cut(s) 696
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 2 cut(s) 62, 696
BstKTI GATC 7 cut(s) 351, 436, 508, 538, 939, 1138, 1526
BstMBI GATC 7 cut(s) 348, 433, 505, 535, 936, 1135, 1523
BstMWI GCNNNNNNNGC 2 cut(s) 322, 1472
BstNI CCWGG 3 cut(s) 18, 640, 1392
BstPI GGTNACC 1 cut(s) 1409
BstSCI CCNGG 4 cut(s) 16, 518, 638, 1390
BstSFI CTRYAG 2 cut(s) 672, 916
BstSLI GKGCMC 1 cut(s) 1144
BstUI CGCG 1 cut(s) 696
BstV1I GCAGC 5 cut(s) 67, 277, 309, 838, 1475
BstX2I RGATCY 2 cut(s) 535, 936
BstXI CCANNNNNNTGG 3 cut(s) 408, 576, 1421
BstYI RGATCY 2 cut(s) 535, 936
Bsu36I CCTNAGG 1 cut(s) 978
BsuRI GGCC 3 cut(s) 5, 86, 1042
BtsCI GGATG 2 cut(s) 193, 1234
BtsIMutI CAGTG 2 cut(s) 732, 1008
BveI ACCTGC 1 cut(s) 1397
Cac8I GCNNGC 2 cut(s) 78, 1286
CciI TCATGA 1 cut(s) 808
CfoI GCGC 2 cut(s) 62, 696
CseI GACGC 2 cut(s) 458, 677
Csp6I GTAC 2 cut(s) 122, 1107
CviAII CATG 4 cut(s) 104, 764, 809, 1123
CviQI GTAC 2 cut(s) 122, 1107
DdeI CTNAG 4 cut(s) 210, 222, 978, 1533
DpnI GATC 7 cut(s) 350, 435, 507, 537, 938, 1137, 1525
DpnII GATC 7 cut(s) 348, 433, 505, 535, 936, 1135, 1523
DraIII CACNNNGTG 1 cut(s) 1148
Eam1104I CTCTTC 2 cut(s) 133, 940
EarI CTCTTC 2 cut(s) 133, 940
Eco130I CCWWGG 1 cut(s) 1224
Eco147I AGGCCT 1 cut(s) 1042
Eco57I CTGAAG 2 cut(s) 1482, 1499
Eco81I CCTNAGG 1 cut(s) 978
Eco88I CYCGRG 2 cut(s) 441, 940
Eco91I GGTNACC 1 cut(s) 1409
EcoO65I GGTNACC 1 cut(s) 1409
EcoRII CCWGG 3 cut(s) 16, 638, 1390
EcoT14I CCWWGG 1 cut(s) 1224
ErhI CCWWGG 1 cut(s) 1224
FaeI CATG 4 cut(s) 107, 767, 812, 1126
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FaqI GGGAC 1 cut(s) 535
FatI CATG 4 cut(s) 103, 763, 808, 1122
FbaI TGATCA 2 cut(s) 348, 433
Fnu4HI GCNGC 7 cut(s) 81, 84, 266, 323, 852, 995, 1464
FokI GGATG 2 cut(s) 200, 1241
Fsp4HI GCNGC 7 cut(s) 81, 84, 266, 323, 852, 995, 1464
FspBI CTAG 2 cut(s) 1103, 1146
GlaI GCGC 2 cut(s) 61, 695
GluI GCNGC 7 cut(s) 81, 84, 266, 323, 852, 995, 1464
GsaI CCCAGC 1 cut(s) 615
GsuI CTGGAG 4 cut(s) 39, 165, 416, 552
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 3 cut(s) 5, 86, 1042
HapII CCGG 1 cut(s) 519
HgaI GACGC 2 cut(s) 458, 677
HhaI GCGC 2 cut(s) 62, 696
Hin1II CATG 4 cut(s) 107, 767, 812, 1126
Hin6I GCGC 2 cut(s) 60, 694
HinP1I GCGC 2 cut(s) 60, 694
HindIII AAGCTT 1 cut(s) 1205
HinfI GANTC 4 cut(s) 388, 542, 1349, 1490
HpaII CCGG 1 cut(s) 519
HphI GGTGA 1 cut(s) 994
Hpy166II GTNNAC 4 cut(s) 1109, 1142, 1300, 1424
Hpy188I TCNGA 8 cut(s) 231, 276, 339, 387, 430, 829, 1255, 1501
Hpy8I GTNNAC 4 cut(s) 1109, 1142, 1300, 1424
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 6 cut(s) 21, 185, 637, 1018, 1231, 1274
HpyCH4III ACNGT 4 cut(s) 121, 294, 451, 806
HpyCH4IV ACGT 2 cut(s) 114, 1032
HpyCH4V TGCA 9 cut(s) 197, 302, 724, 747, 918, 1142, 1406, 1458, 1475
HpyF10VI GCNNNNNNNGC 2 cut(s) 322, 1472
HpyF3I CTNAG 4 cut(s) 210, 222, 978, 1533
HpySE526I ACGT 2 cut(s) 114, 1032
Hsp92II CATG 4 cut(s) 107, 767, 812, 1126
HspAI GCGC 2 cut(s) 60, 694
Ksp22I TGATCA 2 cut(s) 348, 433
Kzo9I GATC 7 cut(s) 348, 433, 505, 535, 936, 1135, 1523
LguI GCTCTTC 1 cut(s) 133
LmnI GCTCC 4 cut(s) 397, 913, 1274, 1314
Lsp1109I GCAGC 5 cut(s) 67, 277, 309, 838, 1475
LweI GCATC 3 cut(s) 543, 880, 1500
MaeI CTAG 2 cut(s) 1103, 1146
MaeII ACGT 2 cut(s) 114, 1032
MaeIII GTNAC 4 cut(s) 115, 982, 1148, 1409
MalI GATC 7 cut(s) 350, 435, 507, 537, 938, 1137, 1525
MbiI CCGCTC 1 cut(s) 1277
MboI GATC 7 cut(s) 348, 433, 505, 535, 936, 1135, 1523
MflI RGATCY 2 cut(s) 535, 936
MhlI GDGCHC 1 cut(s) 1144
MluCI AATT 5 cut(s) 269, 618, 629, 832, 1242
MseI TTAA 3 cut(s) 771, 1035, 1094
MslI CAYNNNNRTG 2 cut(s) 406, 1419
MspA1I CMGCKG 1 cut(s) 1466
MspI CCGG 1 cut(s) 519
MspR9I CCNGG 4 cut(s) 18, 520, 640, 1392
MvaI CCWGG 3 cut(s) 18, 640, 1392
MvnI CGCG 1 cut(s) 696
MwoI GCNNNNNNNGC 2 cut(s) 322, 1472
NciI CCSGG 1 cut(s) 520
NdeII GATC 7 cut(s) 348, 433, 505, 535, 936, 1135, 1523
NlaIII CATG 4 cut(s) 107, 767, 812, 1126
NlaIV GGNNCC 4 cut(s) 399, 909, 952, 1222
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 2 cut(s) 982, 1148
NspV TTCGAA 1 cut(s) 1210
PaeR7I CTCGAG 1 cut(s) 940
PagI TCATGA 1 cut(s) 808
PceI AGGCCT 1 cut(s) 1042
PciSI GCTCTTC 1 cut(s) 133
PfeI GAWTC 4 cut(s) 388, 542, 1349, 1490
PflMI CCANNNNNTGG 1 cut(s) 1334
PfoI TCCNGGA 1 cut(s) 638
PkrI GCNGC 7 cut(s) 82, 85, 267, 324, 853, 996, 1465
PsiI TTATAA 1 cut(s) 1010
Psp1406I AACGTT 1 cut(s) 1032
Psp6I CCWGG 3 cut(s) 16, 638, 1390
PspEI GGTNACC 1 cut(s) 1409
PspFI CCCAGC 1 cut(s) 611
PspGI CCWGG 3 cut(s) 16, 638, 1390
PspN4I GGNNCC 4 cut(s) 399, 909, 952, 1222
PstI CTGCAG 1 cut(s) 920
PsuI RGATCY 2 cut(s) 535, 936
PvuII CAGCTG 1 cut(s) 1466
RsaI GTAC 2 cut(s) 123, 1108
RsaNI GTAC 2 cut(s) 122, 1107
RseI CAYNNNNRTG 2 cut(s) 406, 1419
SapI GCTCTTC 1 cut(s) 133
SaqAI TTAA 3 cut(s) 771, 1035, 1094
SatI GCNGC 7 cut(s) 81, 84, 266, 323, 852, 995, 1464
Sau3AI GATC 7 cut(s) 348, 433, 505, 535, 936, 1135, 1523
ScrFI CCNGG 4 cut(s) 18, 520, 640, 1392
SduI GDGCHC 1 cut(s) 1144
SfaNI GCATC 3 cut(s) 543, 880, 1500
SfcI CTRYAG 2 cut(s) 672, 916
Sfr274I CTCGAG 1 cut(s) 940
SfuI TTCGAA 1 cut(s) 1210
SlaI CTCGAG 1 cut(s) 940
SmiMI CAYNNNNRTG 2 cut(s) 406, 1419
SmlI CTYRAG 2 cut(s) 940, 1046
SmoI CTYRAG 2 cut(s) 940, 1046
Sse9I AATT 5 cut(s) 269, 618, 629, 832, 1242
SseBI AGGCCT 1 cut(s) 1042
SsiI CCGC 4 cut(s) 83, 696, 995, 1277
SspMI CTAG 2 cut(s) 1103, 1146
StuI AGGCCT 1 cut(s) 1042
StyD4I CCNGG 4 cut(s) 16, 518, 638, 1390
StyI CCWWGG 1 cut(s) 1224
TaaI ACNGT 4 cut(s) 121, 294, 451, 806
TaiI ACGT 2 cut(s) 117, 1035
TaqI TCGA 8 cut(s) 111, 126, 256, 551, 941, 1185, 1210, 1368
TasI AATT 5 cut(s) 269, 618, 629, 832, 1242
TauI GCSGC 2 cut(s) 86, 997
TfiI GAWTC 4 cut(s) 388, 542, 1349, 1490
Tru1I TTAA 3 cut(s) 771, 1035, 1094
Tru9I TTAA 3 cut(s) 771, 1035, 1094
TscAI CASTG 2 cut(s) 739, 1008
TseFI GTSAC 2 cut(s) 982, 1148
TseI GCWGC 5 cut(s) 80, 265, 322, 851, 1463
Tsp45I GTSAC 2 cut(s) 982, 1148
TspDTI ATGAA 3 cut(s) 204, 870, 947
TspRI CASTG 2 cut(s) 739, 1008
Van91I CCANNNNNTGG 1 cut(s) 1334
VneI GTGCAC 1 cut(s) 1140
XhoI CTCGAG 1 cut(s) 940
XspI CTAG 2 cut(s) 1103, 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.