FvH4_6g53090

Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
38988679 .. 38993754
5076 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53090.t1

Sequence Viewer

Length: 1521 bp
ATGGCCTCCCCTTCCCAACCACACAACCACCGCTCCGTTAAAAAAGTGGCCGTCGTCGGCGCCGGTGTTAGTGGCCTTGCTGCTGCCTACAAGCTGAAGTCACATGGTTTCGATGTTACGGTACTCGAAGCCGAGGGAAGAGCCGGAGGGAAGCTGAGGAGTGTGTCTTATAATGGCCTGATTTGGGATGAGGGAGCAAACACAATGACCGAGGCTGAGACCGAGGTGCAGACTTTGCTTGACAGTCTGGGGCTTCGAGACAAGCAACAATTTCCAATTTCACAGAACAAACGGTATGTTGCACGGAACGGAATGCCTGTGCTGCTACCTACCAATCCAATTGAGCTGATCAAGAGCAACTTTCTTTCTACAAAATCAAAGTTTCAGATTCTTCTGGAGCCATATTTGTGGAAGAAAAAAAAAGTGTCTGATGATCACACCCAAGAAAGTGTGGCTGGGTTTTTTCAGCGTCATTTTGGGAAAGAGGTCGTTGATTATCTCATTGATCCCTTTGTTGCTGGTACAAGTGCTGGAGATCCAGAATCTCTTTCGATGCCACATTCCTTTCCGGAGTTATGGAACATAGAAAAGAGGTATGGTTCGGTCATAACTGGGACAATTCGGTCAAAAGTATCTTCCAGGAAAGAAAAACGTGGAGATACAAAAGGTTCTGTAGAGAAAGGAAAGCGTCAGCGCGGTTCTTTTTCCTTTCAAGGTGGTATGCAGACACTCACTGATACATTGTGCAAACAGCTTGGCAAACATGAGCTTAAACTGAATTCAAAGGTCTTATCATTATCTTACAGTCATGATGGGAGCAGTACATCAGAAAATTGGTCGCTTTCCTGTGTTGCTAATGATGACAAGCATTCACAAAGTTCATCTGTTGATGCTATAATCATGACGGCTCCATTATGTAGTATCAAAGAAATGAAGATCACAAGAAGAGGAACCATCTTCCCTCTTGATTTTCTTCCAGAGGTGAATTATATGCCACTATCAGTTCTTATAACCAGCTTCAAGAAGGAAAACATTAAAAGGCCTCTTGAGGGATTTGGAGTTCTTGTTCCCTCCAAAGAGCAGGAAAATGGCTTAAAAACACTAGGTACACTATTTTCTTCCATGATGTTTCCAGATCGTGCACCTAGTGACCAATATCTTTACACTACGTTTGTTGGGGGAAGTCGAAACAAGGAACTGGCAAAAGCTTCAAAGGATGAGTTGAAGCAAATTGTTACCTCTGATATAAGGCAACTTTTGGGAGCAGAAGGCGAGCCGACATTTGTGAATCATTACTACTGGAGCAAAGCATTTCCATTGTATGGGCATAACTACGATTCAGTCATAGAAGCAATCGAGAAGATGGAGAAAAACCTACCTGGTTTATTCTATGCAGGTAACCATAGGGGTGGACTGTCTGTTGGCAAAGCAATAGCTTCTGGGTGCAAAGCAGCTGATCTTGTAATCTCCTATCTGGAATCTTCTTCAGATGGCAAGATACTTCAGCAAGGATCGTCATAG

Protein Analysis

507

Amino Acids

55.75

Weight (kDa)

9.1

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 15 - 50 5.6e-08 FAD dependent oxidoreductase
FAD_binding_2 PF00890 16 - 65 2e-06 FAD binding domain
NAD_binding_8 PF13450 18 - 82 2.1e-14 NAD(P)-binding Rossmann-like domain
Amino_oxidase PF01593 23 - 489 5.7e-80 Flavin containing amine oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 171, 1010
AasI GACNNNNNNGTC 1 cut(s) 622
Acc36I ACCTGC 1 cut(s) 1385
AccB1I GGYRCC 1 cut(s) 59
AccB7I CCANNNNNTGG 1 cut(s) 1322
AccBSI CCGCTC 1 cut(s) 33
AccII CGCG 1 cut(s) 696
AccIII TCCGGA 1 cut(s) 568
AciI CCGC 2 cut(s) 31, 696
AclWI GGATC 3 cut(s) 500, 530, 1519
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 778
AcuI CTGAAG 3 cut(s) 116, 1470, 1487
AcyI GRCGYC 1 cut(s) 60
AdeI CACNNNGTG 1 cut(s) 1148
AfaI GTAC 4 cut(s) 123, 523, 823, 1108
AfiI CCNNNNNNNGG 3 cut(s) 184, 1049, 1322
AgsI TTSAA 5 cut(s) 713, 783, 1021, 1212, 1225
AjnI CCWGG 2 cut(s) 638, 1378
AloI GAACNNNNNNTCC 4 cut(s) 1044, 1050, 1076, 1082
AluBI AGCT 9 cut(s) 94, 154, 346, 754, 769, 1017, 1208, 1436, 1454
AluI AGCT 9 cut(s) 94, 154, 346, 754, 769, 1017, 1208, 1436, 1454
Alw21I GWGCWC 1 cut(s) 1144
Alw26I GTCTC 2 cut(s) 212, 252
Alw44I GTGCAC 1 cut(s) 1140
AlwI GGATC 3 cut(s) 500, 530, 1519
Aor13HI TCCGGA 1 cut(s) 568
AoxI GGCC 5 cut(s) 3, 48, 73, 175, 1040
ApaLI GTGCAC 1 cut(s) 1140
ApeKI GCWGC 4 cut(s) 80, 83, 322, 1451
ApoI RAATTY 1 cut(s) 778
AspLEI GCGC 2 cut(s) 62, 696
AsuHPI GGTGA 1 cut(s) 994
BaeGI GKGCMC 1 cut(s) 1144
BanI GGYRCC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 1144
BbvCI CCTCAGC 1 cut(s) 155
BbvI GCAGC 4 cut(s) 67, 70, 309, 1463
BccI CCATC 4 cut(s) 806, 962, 1357, 1484
BceAI ACGGC 2 cut(s) 35, 921
BciT130I CCWGG 2 cut(s) 640, 1380
BclI TGATCA 2 cut(s) 348, 433
BcoDI GTCTC 2 cut(s) 212, 252
BfaI CTAG 2 cut(s) 1103, 1146
BfmI CTRYAG 1 cut(s) 672
BfoI RGCGCY 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 1385
BisI GCNGC 4 cut(s) 81, 84, 323, 1452
BlsI GCNGC 4 cut(s) 82, 85, 324, 1453
Bme1390I CCNGG 2 cut(s) 640, 1380
BmiI GGNNCC 4 cut(s) 61, 399, 909, 952
BmrFI CCNGG 2 cut(s) 640, 1380
BmrI ACTGGG 1 cut(s) 621
BmsI GCATC 2 cut(s) 543, 880
BmuI ACTGGG 1 cut(s) 621
BpmI CTGGAG 3 cut(s) 416, 552, 1321
Bpu10I CCTNAGC 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 1067
BsaHI GRCGYC 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 3 cut(s) 132, 210, 222
BsaWI WCCGGW 1 cut(s) 568
BsaXI ACNNNNNCTCC 4 cut(s) 17, 47, 1050, 1080
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 1049, 1322
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 3 cut(s) 616, 1203, 1304
BseAI TCCGGA 1 cut(s) 568
BseBI CCWGG 2 cut(s) 640, 1380
BseDI CCNNGG 3 cut(s) 132, 210, 222
BseGI GGATG 2 cut(s) 193, 1222
BseLI CCNNNNNNNGG 3 cut(s) 184, 1049, 1322
BseMII CTCAG 2 cut(s) 146, 207
BseNI ACTGG 3 cut(s) 616, 1203, 1304
BseRI GAGGAG 1 cut(s) 172
BseSI GKGCMC 1 cut(s) 1144
BseXI GCAGC 4 cut(s) 67, 70, 309, 1463
BseYI CCCAGC 1 cut(s) 455
BsgI GTGCAG 1 cut(s) 248
Bsh1236I CGCG 1 cut(s) 696
BshFI GGCC 5 cut(s) 5, 50, 75, 177, 1042
BshNI GGYRCC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 1144
BsiSI CCGG 3 cut(s) 63, 144, 569
BslFI GGGAC 1 cut(s) 628
BslI CCNNNNNNNGG 3 cut(s) 184, 1049, 1322
BsmAI GTCTC 2 cut(s) 212, 252
BsmFI GGGAC 1 cut(s) 628
BsmI GAATGC 2 cut(s) 318, 868
BsnI GGCC 5 cut(s) 5, 50, 75, 177, 1042
Bso31I GGTCTC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 1144
Bsp13I TCCGGA 1 cut(s) 568
Bsp143I GATC 8 cut(s) 348, 433, 505, 535, 936, 1135, 1456, 1511
BspACI CCGC 2 cut(s) 31, 696
BspANI GGCC 5 cut(s) 5, 50, 75, 177, 1042
BspCNI CTCAG 2 cut(s) 147, 208
BspEI TCCGGA 1 cut(s) 568
BspFNI CGCG 1 cut(s) 696
BspHI TCATGA 2 cut(s) 808, 900
BspLI GGNNCC 4 cut(s) 61, 399, 909, 952
BspMI ACCTGC 1 cut(s) 1385
BspPI GGATC 3 cut(s) 500, 530, 1519
BspQI GCTCTTC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 212
BsrBI CCGCTC 1 cut(s) 33
BsrFI RCCGGY 1 cut(s) 62
BsrI ACTGG 3 cut(s) 616, 1203, 1304
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 3 cut(s) 132, 210, 222
BssMI GATC 8 cut(s) 348, 433, 505, 535, 936, 1135, 1456, 1511
BssNI GRCGYC 1 cut(s) 60
Bst2UI CCWGG 2 cut(s) 640, 1380
Bst4CI ACNGT 5 cut(s) 121, 245, 294, 806, 1416
Bst6I CTCTTC 2 cut(s) 133, 940
BstACI GRCGYC 1 cut(s) 60
BstAPI GCANNNNNTGC 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 1274
BstDEI CTNAG 2 cut(s) 155, 216
BstEII GGTNACC 1 cut(s) 1397
BstF5I GGATG 2 cut(s) 193, 1222
BstFNI CGCG 1 cut(s) 696
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 2 cut(s) 62, 696
BstKTI GATC 8 cut(s) 351, 436, 508, 538, 939, 1138, 1459, 1514
BstMAI GTCTC 2 cut(s) 212, 252
BstMBI GATC 8 cut(s) 348, 433, 505, 535, 936, 1135, 1456, 1511
BstMWI GCNNNNNNNGC 2 cut(s) 235, 322
BstNI CCWGG 2 cut(s) 640, 1380
BstPI GGTNACC 1 cut(s) 1397
BstSCI CCNGG 2 cut(s) 638, 1378
BstSFI CTRYAG 1 cut(s) 672
BstSLI GKGCMC 1 cut(s) 1144
BstUI CGCG 1 cut(s) 696
BstV1I GCAGC 4 cut(s) 67, 70, 309, 1463
BstX2I RGATCY 1 cut(s) 535
BstXI CCANNNNNNTGG 2 cut(s) 408, 1409
BstYI RGATCY 1 cut(s) 535
BsuRI GGCC 5 cut(s) 5, 50, 75, 177, 1042
BtsCI GGATG 2 cut(s) 193, 1222
BtsIMutI CAGTG 1 cut(s) 732
BveI ACCTGC 1 cut(s) 1385
Cac8I GCNNGC 1 cut(s) 1274
CciI TCATGA 2 cut(s) 808, 900
CfoI GCGC 2 cut(s) 62, 696
Cfr10I RCCGGY 1 cut(s) 62
CseI GACGC 2 cut(s) 458, 677
CsiI ACCWGGT 1 cut(s) 1378
Csp6I GTAC 4 cut(s) 122, 522, 822, 1107
CviAII CATG 5 cut(s) 104, 764, 809, 901, 1123
CviQI GTAC 4 cut(s) 122, 522, 822, 1107
DdeI CTNAG 2 cut(s) 155, 216
DinI GGCGCC 1 cut(s) 61
DpnI GATC 8 cut(s) 350, 435, 507, 537, 938, 1137, 1458, 1513
DpnII GATC 8 cut(s) 348, 433, 505, 535, 936, 1135, 1456, 1511
DraIII CACNNNGTG 1 cut(s) 1148
DrdI GACNNNNNNGTC 1 cut(s) 622
DseDI GACNNNNNNGTC 1 cut(s) 622
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 2 cut(s) 133, 940
EarI CTCTTC 2 cut(s) 133, 940
Eco147I AGGCCT 1 cut(s) 1042
Eco31I GGTCTC 1 cut(s) 212
Eco57I CTGAAG 3 cut(s) 116, 1470, 1487
Eco91I GGTNACC 1 cut(s) 1397
EcoO65I GGTNACC 1 cut(s) 1397
EcoRI GAATTC 1 cut(s) 778
EcoRII CCWGG 2 cut(s) 638, 1378
EgeI GGCGCC 1 cut(s) 61
EheI GGCGCC 1 cut(s) 61
FaeI CATG 5 cut(s) 107, 767, 812, 904, 1126
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FaqI GGGAC 1 cut(s) 628
FatI CATG 5 cut(s) 103, 763, 808, 900, 1122
FbaI TGATCA 2 cut(s) 348, 433
Fnu4HI GCNGC 4 cut(s) 81, 84, 323, 1452
FokI GGATG 2 cut(s) 200, 1229
Fsp4HI GCNGC 4 cut(s) 81, 84, 323, 1452
FspBI CTAG 2 cut(s) 1103, 1146
GlaI GCGC 2 cut(s) 61, 695
GluI GCNGC 4 cut(s) 81, 84, 323, 1452
GsaI CCCAGC 1 cut(s) 459
GsuI CTGGAG 3 cut(s) 416, 552, 1321
HaeII RGCGCY 1 cut(s) 63
HaeIII GGCC 5 cut(s) 5, 50, 75, 177, 1042
HapII CCGG 3 cut(s) 63, 144, 569
HgaI GACGC 2 cut(s) 458, 677
HhaI GCGC 2 cut(s) 62, 696
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 5 cut(s) 107, 767, 812, 904, 1126
Hin6I GCGC 2 cut(s) 60, 694
HinP1I GCGC 2 cut(s) 60, 694
HindIII AAGCTT 1 cut(s) 1206
HinfI GANTC 5 cut(s) 388, 542, 1288, 1337, 1478
HpaII CCGG 3 cut(s) 63, 144, 569
HphI GGTGA 1 cut(s) 994
Hpy166II GTNNAC 3 cut(s) 1109, 1142, 1412
Hpy188I TCNGA 5 cut(s) 387, 430, 829, 1243, 1489
Hpy8I GTNNAC 3 cut(s) 1109, 1142, 1412
Hpy99I CGWCG 2 cut(s) 56, 59
HpyAV CCTTC 3 cut(s) 21, 1018, 1262
HpyCH4III ACNGT 5 cut(s) 121, 245, 294, 806, 1416
HpyCH4IV ACGT 2 cut(s) 652, 1169
HpyCH4V TGCA 7 cut(s) 229, 302, 724, 747, 1142, 1394, 1446
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 322
HpyF3I CTNAG 2 cut(s) 155, 216
HpySE526I ACGT 2 cut(s) 652, 1169
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 5 cut(s) 107, 767, 812, 904, 1126
HspAI GCGC 2 cut(s) 60, 694
KasI GGCGCC 1 cut(s) 59
Kpn2I TCCGGA 1 cut(s) 568
Ksp22I TGATCA 2 cut(s) 348, 433
Kzo9I GATC 8 cut(s) 348, 433, 505, 535, 936, 1135, 1456, 1511
LguI GCTCTTC 1 cut(s) 133
LmnI GCTCC 7 cut(s) 38, 194, 397, 816, 913, 1262, 1302
Lsp1109I GCAGC 4 cut(s) 67, 70, 309, 1463
LweI GCATC 2 cut(s) 543, 880
MabI ACCWGGT 1 cut(s) 1378
MaeI CTAG 2 cut(s) 1103, 1146
MaeII ACGT 2 cut(s) 652, 1169
MaeIII GTNAC 5 cut(s) 99, 115, 1148, 1234, 1397
MalI GATC 8 cut(s) 350, 435, 507, 537, 938, 1137, 1458, 1513
MbiI CCGCTC 1 cut(s) 33
MboI GATC 8 cut(s) 348, 433, 505, 535, 936, 1135, 1456, 1511
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 1 cut(s) 1144
MluCI AATT 8 cut(s) 269, 276, 339, 618, 778, 832, 985, 1230
Mly113I GGCGCC 1 cut(s) 60
MroI TCCGGA 1 cut(s) 568
MseI TTAA 4 cut(s) 39, 771, 1035, 1094
MslI CAYNNNNRTG 2 cut(s) 406, 1407
MspA1I CMGCKG 1 cut(s) 1454
MspI CCGG 3 cut(s) 63, 144, 569
MspR9I CCNGG 2 cut(s) 640, 1380
MunI CAATTG 1 cut(s) 339
Mva1269I GAATGC 2 cut(s) 318, 868
MvaI CCWGG 2 cut(s) 640, 1380
MvnI CGCG 1 cut(s) 696
MwoI GCNNNNNNNGC 2 cut(s) 235, 322
NarI GGCGCC 1 cut(s) 60
NdeII GATC 8 cut(s) 348, 433, 505, 535, 936, 1135, 1456, 1511
NlaIII CATG 5 cut(s) 107, 767, 812, 904, 1126
NlaIV GGNNCC 4 cut(s) 61, 399, 909, 952
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 2 cut(s) 99, 1148
PagI TCATGA 2 cut(s) 808, 900
PceI AGGCCT 1 cut(s) 1042
PciSI GCTCTTC 1 cut(s) 133
PctI GAATGC 2 cut(s) 318, 868
PfeI GAWTC 5 cut(s) 388, 542, 1288, 1337, 1478
PflMI CCANNNNNTGG 1 cut(s) 1322
PfoI TCCNGGA 1 cut(s) 638
PkrI GCNGC 4 cut(s) 82, 85, 324, 1453
PluTI GGCGCC 1 cut(s) 63
PsiI TTATAA 2 cut(s) 171, 1010
Psp6I CCWGG 2 cut(s) 638, 1378
PspEI GGTNACC 1 cut(s) 1397
PspFI CCCAGC 1 cut(s) 455
PspGI CCWGG 2 cut(s) 638, 1378
PspN4I GGNNCC 4 cut(s) 61, 399, 909, 952
PsuI RGATCY 1 cut(s) 535
PvuII CAGCTG 1 cut(s) 1454
RsaI GTAC 4 cut(s) 123, 523, 823, 1108
RsaNI GTAC 4 cut(s) 122, 522, 822, 1107
RseI CAYNNNNRTG 2 cut(s) 406, 1407
SapI GCTCTTC 1 cut(s) 133
SaqAI TTAA 4 cut(s) 39, 771, 1035, 1094
SatI GCNGC 4 cut(s) 81, 84, 323, 1452
Sau3AI GATC 8 cut(s) 348, 433, 505, 535, 936, 1135, 1456, 1511
ScrFI CCNGG 2 cut(s) 640, 1380
SduI GDGCHC 1 cut(s) 1144
SexAI ACCWGGT 1 cut(s) 1378
SfaNI GCATC 2 cut(s) 543, 880
SfcI CTRYAG 1 cut(s) 672
SfoI GGCGCC 1 cut(s) 61
SgrAI CRCCGGYG 1 cut(s) 62
SmiMI CAYNNNNRTG 2 cut(s) 406, 1407
SmlI CTYRAG 1 cut(s) 1046
SmoI CTYRAG 1 cut(s) 1046
Sse9I AATT 8 cut(s) 269, 276, 339, 618, 778, 832, 985, 1230
SseBI AGGCCT 1 cut(s) 1042
SsiI CCGC 2 cut(s) 31, 696
SspDI GGCGCC 1 cut(s) 59
SspMI CTAG 2 cut(s) 1103, 1146
StuI AGGCCT 1 cut(s) 1042
StyD4I CCNGG 2 cut(s) 638, 1378
TaaI ACNGT 5 cut(s) 121, 245, 294, 806, 1416
TaiI ACGT 2 cut(s) 655, 1172
TaqI TCGA 6 cut(s) 111, 126, 256, 551, 1186, 1356
TaqII GACCGA 4 cut(s) 224, 236, 592, 612
TasI AATT 8 cut(s) 269, 276, 339, 618, 778, 832, 985, 1230
TatI WGTACW 1 cut(s) 821
TfiI GAWTC 5 cut(s) 388, 542, 1288, 1337, 1478
Tru1I TTAA 4 cut(s) 39, 771, 1035, 1094
Tru9I TTAA 4 cut(s) 39, 771, 1035, 1094
TscAI CASTG 1 cut(s) 739
TseFI GTSAC 2 cut(s) 99, 1148
TseI GCWGC 4 cut(s) 80, 83, 322, 1451
Tsp45I GTSAC 2 cut(s) 99, 1148
TspDTI ATGAA 2 cut(s) 870, 947
TspGWI ACGGA 3 cut(s) 25, 319, 324
TspRI CASTG 1 cut(s) 739
Van91I CCANNNNNTGG 1 cut(s) 1322
VneI GTGCAC 1 cut(s) 1140
XapI RAATTY 1 cut(s) 778
XspI CTAG 2 cut(s) 1103, 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.