Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006685

Physical Location & Seq

Genomic Coordinates Forward (+)

70394910 .. 70398137

Gene Structure 3228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0580300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGACAGAAATGATTTGAGGGAGGCGTTTAAGATGTACGACATGGTTGGATGTAAGCCTACTCAGCTCTTCCCAGTCCTCTTTTCGGAAACTCCAAAGCGTCAACCCGAACTGTCCCTTACCTCGGCCGAAAGCCTTTCCCACGGCCTCTTCCTCACTCCTATGCAGTTCTTCTGCCCACTACGGCTACGATTCCGTCAAGATCGGAGGCGGTTCGGTTTTAGATTCGGAAACATCATTTTAACTTCAAATGGAGGAAGCGTCATGGTGATGGAAGGTCTTTTGGACATGCTAAAGGATGGAAAATATCTTGATACCTATATTGTGATTCAAACTATGAGATGCTATTTGAACTGTGATGATATTGATCATGGTGTGCAAACCCCTGATGACTATCTGAAGTTAGGGAAGCTTCCTGCACCAGAACTCATAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004729 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010154 GO:0015994 GO:0015995 GO:0016020 GO:0016491 GO:0016627 GO:0016634 GO:0018130 GO:0019438 GO:0019866 GO:0022414 GO:0031090 GO:0031966 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042170 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051186 GO:0051188 GO:0055114 GO:0061458 GO:0070818 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Amino_oxidase

Protein Analysis

145

Amino Acids

16.75

Weight (kDa)

6.72

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006685)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14220 AT5G14220 AT5G14220 AT5G14220 AT5G14220
fragaria_vesca	FvH4_6g53090 FvH4_6g53090 FvH4_6g53090
malus_domestica	MD17G1014700.v1.1 MD17G1014800.v1.1
prunus_persica	Prupe.3G303000_v2.0.a1 Prupe.3G303000_v2.0.a1 Prupe.3G303000_v2.0.a1
pyrus_communis	pycom17g01180
rosa_chinensis	RchiOBHm_Chr2g0174871 RchiOBHm_Chr2g0174941
rosa_laevigata	RLG00000022303
rosa_multiflora	Rmu_sc0001277.1_g000002 Rmu_sc0009766.1_g000003
rosa_roxburghii	Rroxscaffold_2G00077620
rosa_rugosa	Rorug02G0580300
rosa_samantha	Rh2AG661400 Rh2BG672700 Rh2CG635500 Rh2DG685900
rosa_wichuraiana	Rw2G054200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	419
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	2 cut(s)	85, 124
AgsI	TTSAA	3 cut(s)	249, 332, 352
AluBI	AGCT	2 cut(s)	67, 412
AluI	AGCT	2 cut(s)	67, 412
AoxI	GGCC	2 cut(s)	126, 145
AsuHPI	GGTGA	1 cut(s)	280
BccI	CCATC	2 cut(s)	265, 293
BceAI	ACGGC	2 cut(s)	160, 200
BclI	TGATCA	1 cut(s)	367
BmrI	ACTGGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	332
BmuI	ACTGGG	1 cut(s)	68
BsaBI	GATNNNNATC	2 cut(s)	366, 393
BsaJI	CCNNGG	2 cut(s)	123, 142
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 124
Bse1I	ACTGG	1 cut(s)	74
Bse8I	GATNNNNATC	2 cut(s)	366, 393
BseDI	CCNNGG	2 cut(s)	123, 142
BseGI	GGATG	2 cut(s)	56, 304
BseJI	GATNNNNATC	2 cut(s)	366, 393
BseLI	CCNNNNNNNGG	2 cut(s)	85, 124
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	74
BseX3I	CGGCCG	1 cut(s)	126
BsgI	GTGCAG	1 cut(s)	402
Bsh1285I	CGRYCG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	128, 147
BsiEI	CGRYCG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	100
BslI	CCNNNNNNNGG	2 cut(s)	85, 124
BsmFI	GGGAC	1 cut(s)	100
BsnI	GGCC	2 cut(s)	128, 147
Bsp143I	GATC	2 cut(s)	202, 367
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	2 cut(s)	128, 147
BspCNI	CTCAG	1 cut(s)	76
BspQI	GCTCTTC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	123, 142
BssMI	GATC	2 cut(s)	202, 367
Bst4CI	ACNGT	2 cut(s)	114, 356
Bst6I	CTCTTC	2 cut(s)	74, 155
BstDEI	CTNAG	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	56, 304
BstKTI	GATC	2 cut(s)	205, 370
BstMBI	GATC	2 cut(s)	202, 367
BstMCI	CGRYCG	1 cut(s)	129
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	292
BstZI	CGGCCG	1 cut(s)	126
BsuRI	GGCC	2 cut(s)	128, 147
BtgI	CCRYGG	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	56, 304
CseI	GACGC	2 cut(s)	89, 250
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	4 cut(s)	43, 265, 289, 371
CviJI	RGCY	7 cut(s)	58, 67, 128, 135, 147, 187, 412
CviKI_1	RGCY	7 cut(s)	58, 67, 128, 135, 147, 187, 412
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	2 cut(s)	204, 369
DpnII	GATC	2 cut(s)	202, 367
EaeI	YGGCCR	1 cut(s)	126
EagI	CGGCCG	1 cut(s)	126
Eam1104I	CTCTTC	2 cut(s)	74, 155
EarI	CTCTTC	2 cut(s)	74, 155
EclXI	CGGCCG	1 cut(s)	126
Eco52I	CGGCCG	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	419
FaeI	CATG	4 cut(s)	46, 268, 292, 374
FaiI	YATR	9 cut(s)	44, 164, 266, 290, 321, 338, 372, 431, 436
FaqI	GGGAC	1 cut(s)	100
FatI	CATG	4 cut(s)	42, 264, 288, 370
FbaI	TGATCA	1 cut(s)	367
FokI	GGATG	2 cut(s)	63, 311
HaeIII	GGCC	2 cut(s)	128, 147
HgaI	GACGC	2 cut(s)	89, 250
Hin1II	CATG	4 cut(s)	46, 268, 292, 374
HincII	GTYRAC	1 cut(s)	104
HindII	GTYRAC	1 cut(s)	104
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	3 cut(s)	192, 225, 328
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	4 cut(s)	88, 207, 230, 399
Hpy188III	TCNNGA	2 cut(s)	200, 311
Hpy8I	GTNNAC	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	2 cut(s)	114, 356
HpyCH4V	TGCA	3 cut(s)	166, 379, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	4 cut(s)	46, 268, 292, 374
Ksp22I	TGATCA	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	202, 367
LguI	GCTCTTC	1 cut(s)	74
LpnPI	CCDG	3 cut(s)	87, 399, 429
LweI	GCATC	1 cut(s)	332
MalI	GATC	2 cut(s)	204, 369
MboI	GATC	2 cut(s)	202, 367
MboII	GAAGA	3 cut(s)	61, 142, 163
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	8 cut(s)	12, 16, 89, 133, 158, 164, 201, 248
MseI	TTAA	2 cut(s)	30, 242
MslI	CAYNNNNRTG	2 cut(s)	161, 269
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	2 cut(s)	202, 367
NlaIII	CATG	4 cut(s)	46, 268, 292, 374
NmeAIII	GCCGAG	1 cut(s)	104
NspI	RCATGY	1 cut(s)	292
PciSI	GCTCTTC	1 cut(s)	74
PfeI	GAWTC	3 cut(s)	192, 225, 328
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	2 cut(s)	161, 269
SapI	GCTCTTC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	30, 242
Sau3AI	GATC	2 cut(s)	202, 367
SetI	ASST	5 cut(s)	69, 125, 280, 320, 414
SfaNI	GCATC	1 cut(s)	332
SmiMI	CAYNNNNRTG	2 cut(s)	161, 269
SsiI	CCGC	1 cut(s)	211
TaaI	ACNGT	2 cut(s)	114, 356
TfiI	GAWTC	3 cut(s)	192, 225, 328
Tru1I	TTAA	2 cut(s)	30, 242
Tru9I	TTAA	2 cut(s)	30, 242
TspGWI	ACGGA	1 cut(s)	185
XceI	RCATGY	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.