AT5G14360

Ubiquitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013176
Physical Location & Seq
Forward (+)
4630892 .. 4631851
960 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14360.1

Sequence Viewer

Length: 492 bp
ATGATGAAGTTTAAGACCAAGAGGTTTGGGATTAGATTTGGATTTGGTAAAAGAATCAACAACAAAGGCACACAACAAGATCAACAACAAAAGGGAGTTGGTAACAACAACAACAATAGTAGCTGCAGCAACTGTGAGATCAAATGGGAACTTAGGCCAGGAGGCATGCTTGTTCAAAAAAGACAAGAGAGTATTGGTGAAGACTTGATCTCCATTAGAGTCTCTACTTTTGCTCATTTTCATGATCTTTCCATTGAAGCCACCTCCACTTTTGGAGAACTTAAGATGGTATTATCATTGCTTACCGGTTTAGAGCCAAAACAACAAAGGCTAGTATTCAAAGGGAAAGAAAGAGAGGATCATGAATATCTACACATGGTTGGTGTTGGGGATAAAGACAAAGTGTTGTTGTTAGAAGATCCTGGCTTCAAAGATAAAAAGCTTCTTGATCTTAACAGCATTTCCACTACTTGTCCGACTATAATCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

163

Amino Acids

18.47

Weight (kDa)

9.15

Isoelectric Point (pI)

31.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 81 - 137 3.7e-09 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14360
fragaria_vesca FvH4_6g52220
malus_domestica MD09G1019600.v1.1 MD17G1020200.v1.1
prunus_persica Prupe.3G296800_v2.0.a1
pyrus_communis pycom111g01630 pycom17g01680
rosa_chinensis RchiOBHm_Chr2g0173771
rosa_laevigata RLG00000022220
rosa_multiflora Rmu_sc0002538.1_g000001 Rmu_sc0003188.1_g000005
rosa_roxburghii Rroxscaffold_2G00078640
rosa_rugosa Rorug02G0572600
rosa_samantha Rh2AG651600 Rh2BG662200 Rh2CG627000 Rh2DG677400
rosa_wichuraiana Rw2G053490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 366, 413
AflII CTTAAG 1 cut(s) 281
AgeI ACCGGT 1 cut(s) 305
AgsI TTSAA 4 cut(s) 176, 257, 340, 430
AjnI CCWGG 2 cut(s) 157, 421
AluBI AGCT 2 cut(s) 123, 442
AluI AGCT 2 cut(s) 123, 442
Alw26I GTCTC 1 cut(s) 226
AlwI GGATC 2 cut(s) 366, 413
AlwNI CAGNNNCTG 1 cut(s) 132
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 2 cut(s) 123, 126
AsiGI ACCGGT 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 209
BbsI GAAGAC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 110, 138
BccI CCATC 1 cut(s) 280
BciT130I CCWGG 2 cut(s) 159, 423
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 124
BfrI CTTAAG 1 cut(s) 281
BisI GCNGC 2 cut(s) 124, 127
BlsI GCNGC 2 cut(s) 125, 128
Bme1390I CCNGG 2 cut(s) 159, 423
BmrFI CCNGG 2 cut(s) 159, 423
BpiI GAAGAC 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bse118I RCCGGY 1 cut(s) 305
Bse3DI GCAATG 1 cut(s) 296
BseBI CCWGG 2 cut(s) 159, 423
BseMI GCAATG 1 cut(s) 296
BseXI GCAGC 2 cut(s) 110, 138
BshFI GGCC 1 cut(s) 157
BshTI ACCGGT 1 cut(s) 305
BsiSI CCGG 1 cut(s) 306
BsmAI GTCTC 1 cut(s) 226
BsnI GGCC 1 cut(s) 157
Bsp143I GATC 7 cut(s) 79, 138, 207, 244, 358, 418, 448
BspANI GGCC 1 cut(s) 157
BspHI TCATGA 2 cut(s) 241, 361
BspMAI CTGCAG 1 cut(s) 128
BspPI GGATC 2 cut(s) 366, 413
BspTI CTTAAG 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 305
BssAI RCCGGY 1 cut(s) 305
BssMI GATC 7 cut(s) 79, 138, 207, 244, 358, 418, 448
Bst2UI CCWGG 2 cut(s) 159, 423
Bst4CI ACNGT 1 cut(s) 134
BstAFI CTTAAG 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 152
BstKTI GATC 7 cut(s) 82, 141, 210, 247, 361, 421, 451
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 7 cut(s) 79, 138, 207, 244, 358, 418, 448
BstNI CCWGG 2 cut(s) 159, 423
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 2 cut(s) 157, 421
BstSFI CTRYAG 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 110, 138
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BsuRI GGCC 1 cut(s) 157
Cac8I GCNNGC 1 cut(s) 167
CaiI CAGNNNCTG 1 cut(s) 132
CciI TCATGA 2 cut(s) 241, 361
Cfr10I RCCGGY 1 cut(s) 305
CspAI ACCGGT 1 cut(s) 305
CviAII CATG 4 cut(s) 166, 242, 362, 376
CviJI RGCY 7 cut(s) 123, 157, 260, 316, 331, 426, 442
CviKI_1 RGCY 7 cut(s) 123, 157, 260, 316, 331, 426, 442
DdeI CTNAG 1 cut(s) 152
DpnI GATC 7 cut(s) 81, 140, 209, 246, 360, 420, 450
DpnII GATC 7 cut(s) 79, 138, 207, 244, 358, 418, 448
EcoRII CCWGG 2 cut(s) 157, 421
FaeI CATG 4 cut(s) 169, 245, 365, 379
FaiI YATR 6 cut(s) 167, 243, 363, 377, 482, 490
FatI CATG 4 cut(s) 165, 241, 361, 375
Fnu4HI GCNGC 2 cut(s) 124, 127
Fsp4HI GCNGC 2 cut(s) 124, 127
FspBI CTAG 1 cut(s) 332
GluI GCNGC 2 cut(s) 124, 127
HaeIII GGCC 1 cut(s) 157
HapII CCGG 1 cut(s) 306
Hin1II CATG 4 cut(s) 169, 245, 365, 379
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 2 cut(s) 54, 219
HpaII CCGG 1 cut(s) 306
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 1 cut(s) 477
Hpy188III TCNNGA 3 cut(s) 242, 362, 446
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 1 cut(s) 126
HpyF3I CTNAG 1 cut(s) 152
Hsp92II CATG 4 cut(s) 169, 245, 365, 379
Kzo9I GATC 7 cut(s) 79, 138, 207, 244, 358, 418, 448
LpnPI CCDG 5 cut(s) 144, 171, 319, 408, 435
Lsp1109I GCAGC 2 cut(s) 110, 138
MaeI CTAG 1 cut(s) 332
MaeIII GTNAC 1 cut(s) 101
MalI GATC 7 cut(s) 81, 140, 209, 246, 360, 420, 450
MboI GATC 7 cut(s) 79, 138, 207, 244, 358, 418, 448
MboII GAAGA 2 cut(s) 212, 428
MflI RGATCY 1 cut(s) 418
MlyI GAGTC 1 cut(s) 228
MnlI CCTC 4 cut(s) 15, 155, 274, 349
MseI TTAA 3 cut(s) 12, 282, 453
MslI CAYNNNNRTG 1 cut(s) 240
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 2 cut(s) 159, 423
MvaI CCWGG 2 cut(s) 159, 423
NdeII GATC 7 cut(s) 79, 138, 207, 244, 358, 418, 448
NlaIII CATG 4 cut(s) 169, 245, 365, 379
NspI RCATGY 1 cut(s) 169
PaeI GCATGC 1 cut(s) 169
PagI TCATGA 2 cut(s) 241, 361
PfeI GAWTC 1 cut(s) 54
PinAI ACCGGT 1 cut(s) 305
PkrI GCNGC 2 cut(s) 125, 128
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp6I CCWGG 2 cut(s) 157, 421
PspGI CCWGG 2 cut(s) 157, 421
PstI CTGCAG 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 132
PsuI RGATCY 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 3 cut(s) 12, 282, 453
SatI GCNGC 2 cut(s) 124, 127
Sau3AI GATC 7 cut(s) 79, 138, 207, 244, 358, 418, 448
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 2 cut(s) 159, 423
SetI ASST 4 cut(s) 26, 125, 266, 444
SfcI CTRYAG 1 cut(s) 124
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
SphI GCATGC 1 cut(s) 169
SspMI CTAG 1 cut(s) 332
StyD4I CCNGG 2 cut(s) 157, 421
TaaI ACNGT 1 cut(s) 134
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 3 cut(s) 12, 282, 453
Tru9I TTAA 3 cut(s) 12, 282, 453
TseI GCWGC 2 cut(s) 123, 126
TspDTI ATGAA 3 cut(s) 20, 230, 378
Vha464I CTTAAG 1 cut(s) 281
XceI RCATGY 1 cut(s) 169
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.