FvH4_6g52220

BAG family molecular chaperone regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013176
Physical Location & Seq
Reverse (-)
38534418 .. 38535602
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52220.t1

Sequence Viewer

Length: 495 bp
ATGATGAAGCTGAGGTCGAAGAGGTTCTGCAGAAGCTTCAGCAGCTCGAAGATTAAGCAGGCGGGGACGACGACTGAGCAAAAGGGTCATCAGTTTGATAATTCTAAGGCTATTAAGGTTGATGGTGAAATCAAGTGGGAGCTTCGACCGGGAGGCATGCTTGTTCAGAGGAGGGAGACTCCAAACGCCGGAGAGGGCATGATCACCGTTAAGGTCTCCACTGTTTCACAGTGGCATGACATCTCCGTCGAACCCACTTCTACCTTCGGCGAATTAAAAATGATATTGTCATTGGTGACTGGTATGGAGGCACGAGAGCAAAGGCTGTTGTACAAAGGGAAAGAGAGAGAGGATGGTGAATACCTACACATGGTTGGTGTTAGAGACAAAGACAAAGTGTTGTTGCTCCAAGATCCAGCTATGAAGGAGATGAAGCAGATGCTACATGGAAGCAACATTGCAACTTCTACTTGCAGTCGCACCATTAGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

165

Amino Acids

18.54

Weight (kDa)

9.51

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 68 - 137 6.5e-11 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14360
fragaria_vesca FvH4_6g52220
malus_domestica MD09G1019600.v1.1 MD17G1020200.v1.1
prunus_persica Prupe.3G296800_v2.0.a1
pyrus_communis pycom111g01630 pycom17g01680
rosa_chinensis RchiOBHm_Chr2g0173771
rosa_laevigata RLG00000022220
rosa_multiflora Rmu_sc0002538.1_g000001 Rmu_sc0003188.1_g000005
rosa_roxburghii Rroxscaffold_2G00078640
rosa_rugosa Rorug02G0572600
rosa_samantha Rh2AG651600 Rh2BG662200 Rh2CG627000 Rh2DG677400
rosa_wichuraiana Rw2G053490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AciI CCGC 1 cut(s) 62
AclWI GGATC 1 cut(s) 407
AcuI CTGAAG 1 cut(s) 22
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 2 cut(s) 188, 370
AluBI AGCT 5 cut(s) 10, 36, 45, 142, 419
AluI AGCT 5 cut(s) 10, 36, 45, 142, 419
Alw26I GTCTC 3 cut(s) 170, 220, 378
AlwI GGATC 1 cut(s) 407
ApeKI GCWGC 1 cut(s) 42
Asp700I GAANNNNTTC 1 cut(s) 23
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 4 cut(s) 137, 196, 307, 368
BauI CACGAG 1 cut(s) 312
BbvCI CCTCAGC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 54
BccI CCATC 2 cut(s) 116, 347
BclI TGATCA 1 cut(s) 201
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 3 cut(s) 170, 220, 378
BfmI CTRYAG 1 cut(s) 28
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 429
BplI GAGNNNNNCTC 2 cut(s) 163, 195
Bpu10I CCTNAGC 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 220
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 370
Bse1I ACTGG 1 cut(s) 304
Bse3DI GCAATG 1 cut(s) 456
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 2 cut(s) 188, 370
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 304
BseRI GAGGAG 1 cut(s) 184
BseXI GCAGC 1 cut(s) 54
Bsh1285I CGRYCG 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 149
BsiSI CCGG 2 cut(s) 149, 189
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 188, 370
BsmAI GTCTC 3 cut(s) 170, 220, 378
BsmFI GGGAC 1 cut(s) 79
Bso31I GGTCTC 1 cut(s) 220
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 2 cut(s) 201, 412
BspACI CCGC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 67
BspMAI CTGCAG 1 cut(s) 32
BspPI GGATC 1 cut(s) 407
BspTNI GGTCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 456
BsrGI TGTACA 1 cut(s) 330
BsrI ACTGG 1 cut(s) 304
BssMI GATC 2 cut(s) 201, 412
BssSI CACGAG 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 312
Bst4CI ACNGT 3 cut(s) 208, 223, 231
Bst6I CTCTTC 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 330
BstC8I GCNNGC 2 cut(s) 60, 158
BstDEI CTNAG 3 cut(s) 11, 75, 105
BstF5I GGATG 1 cut(s) 358
BstKTI GATC 2 cut(s) 204, 415
BstMAI GTCTC 3 cut(s) 170, 220, 378
BstMBI GATC 2 cut(s) 201, 412
BstMCI CGRYCG 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 412
BstYI RGATCY 1 cut(s) 412
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 219, 236
Cac8I GCNNGC 2 cut(s) 60, 158
Csp6I GTAC 1 cut(s) 331
CviAII CATG 5 cut(s) 157, 199, 236, 370, 446
CviJI RGCY 7 cut(s) 10, 36, 45, 110, 142, 325, 419
CviKI_1 RGCY 7 cut(s) 10, 36, 45, 110, 142, 325, 419
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 3 cut(s) 11, 75, 105
DpnI GATC 2 cut(s) 203, 414
DpnII GATC 2 cut(s) 201, 412
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco31I GGTCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 22
FaeI CATG 5 cut(s) 160, 202, 239, 373, 449
FaiI YATR 7 cut(s) 158, 200, 237, 305, 371, 422, 447
FaqI GGGAC 1 cut(s) 79
FatI CATG 5 cut(s) 156, 198, 235, 369, 445
FauI CCCGC 1 cut(s) 55
FbaI TGATCA 1 cut(s) 201
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 43
HapII CCGG 2 cut(s) 149, 189
Hin1II CATG 5 cut(s) 160, 202, 239, 373, 449
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 1 cut(s) 178
HpaII CCGG 2 cut(s) 149, 189
HphI GGTGA 4 cut(s) 137, 196, 307, 368
Hpy188I TCNGA 2 cut(s) 168, 494
Hpy99I CGWCG 2 cut(s) 73, 251
HpyAV CCTTC 2 cut(s) 274, 418
HpyCH4III ACNGT 3 cut(s) 208, 223, 231
HpyCH4V TGCA 3 cut(s) 30, 461, 474
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 3 cut(s) 11, 75, 105
Hsp92II CATG 5 cut(s) 160, 202, 239, 373, 449
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 2 cut(s) 201, 412
LmnI GCTCC 2 cut(s) 139, 411
LpnPI CCDG 5 cut(s) 44, 162, 202, 285, 429
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 1 cut(s) 429
MaeIII GTNAC 1 cut(s) 295
MalI GATC 2 cut(s) 203, 414
MboI GATC 2 cut(s) 201, 412
MboII GAAGA 2 cut(s) 31, 61
MflI RGATCY 1 cut(s) 412
MluCI AATT 2 cut(s) 100, 272
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 8 cut(s) 6, 15, 146, 162, 165, 187, 301, 343
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 4 cut(s) 54, 114, 210, 275
MspI CCGG 2 cut(s) 149, 189
MspR9I CCNGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 42
NciI CCSGG 1 cut(s) 150
NdeII GATC 2 cut(s) 201, 412
NlaIII CATG 5 cut(s) 160, 202, 239, 373, 449
NmuCI GTSAC 1 cut(s) 295
NspI RCATGY 1 cut(s) 160
PaeI GCATGC 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 44
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
PstI CTGCAG 1 cut(s) 32
PsuI RGATCY 1 cut(s) 412
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SaqAI TTAA 4 cut(s) 54, 114, 210, 275
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 2 cut(s) 201, 412
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 150
SfaNI GCATC 1 cut(s) 429
SfcI CTRYAG 1 cut(s) 28
SphI GCATGC 1 cut(s) 160
Sse9I AATT 2 cut(s) 100, 272
SsiI CCGC 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 3 cut(s) 208, 223, 231
TaqI TCGA 4 cut(s) 17, 47, 145, 249
TasI AATT 2 cut(s) 100, 272
TatI WGTACW 1 cut(s) 330
Tru1I TTAA 4 cut(s) 54, 114, 210, 275
Tru9I TTAA 4 cut(s) 54, 114, 210, 275
TscAI CASTG 2 cut(s) 226, 236
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 3 cut(s) 20, 437, 446
TspGWI ACGGA 1 cut(s) 235
TspRI CASTG 2 cut(s) 226, 236
XceI RCATGY 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.