Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002538.1

Orthogroup ID

OG0013176

Physical Location & Seq

Genomic Coordinates Forward (+)

791 .. 2010

Gene Structure 1220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002538.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgatgaagctgaggtcaaagaggttctgcagaagcttcagcagctctaagattaaggcggggactgatcagaagggtcagtttgaagctaaggccatcaaggttgatggtgaaatcaagtgggagcttcgaccgggaggcatgcttgttcagaggagggagacccaaaacgccggagagggcatgatcaccgttaaggtctccactgtttcgcagtggcatgacatctccgtcgaacccacttctactttcggcgaattaaaaatgatactgtcattggtgacgggtatggaggcaagagagcaaaggctgttgtacaaagggaaagagagagaggatggtgaatacctacacatggttggtgttagagacaaagagaaggtgttgttgctccaagatccagctatgaaggagatgaagcagatgcttcatggaaataacattgcaacttctacttgcagtcgcaccattagtgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

159

Amino Acids

18.01

Weight (kDa)

9.51

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14360
fragaria_vesca	FvH4_6g52220
malus_domestica	MD09G1019600.v1.1 MD17G1020200.v1.1
prunus_persica	Prupe.3G296800_v2.0.a1
pyrus_communis	pycom111g01630 pycom17g01680
rosa_chinensis	RchiOBHm_Chr2g0173771
rosa_laevigata	RLG00000022220
rosa_multiflora	Rmu_sc0002538.1_g000001 Rmu_sc0003188.1_g000005
rosa_roxburghii	Rroxscaffold_2G00078640
rosa_rugosa	Rorug02G0572600
rosa_samantha	Rh2AG651600 Rh2BG662200 Rh2CG627000 Rh2DG677400
rosa_wichuraiana	Rw2G053490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	1 cut(s)	392
AcuI	CTGAAG	1 cut(s)	22
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	1 cut(s)	355
AgsI	TTSAA	1 cut(s)	86
AluBI	AGCT	6 cut(s)	10, 36, 45, 89, 127, 404
AluI	AGCT	6 cut(s)	10, 36, 45, 89, 127, 404
Alw26I	GTCTC	3 cut(s)	155, 205, 363
AlwI	GGATC	1 cut(s)	392
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	1 cut(s)	42
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	4 cut(s)	122, 181, 292, 353
BbvCI	CCTCAGC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	3 cut(s)	101, 104, 332
BclI	TGATCA	2 cut(s)	67, 186
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	3 cut(s)	155, 205, 363
BfmI	CTRYAG	1 cut(s)	28
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	414
Bpu10I	CCTNAGC	2 cut(s)	11, 90
BpuMI	CCSGG	1 cut(s)	135
BsaI	GGTCTC	2 cut(s)	155, 205
Bsc4I	CCNNNNNNNGG	1 cut(s)	355
Bse3DI	GCAATG	1 cut(s)	441
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	1 cut(s)	355
BseMI	GCAATG	1 cut(s)	441
BseRI	GAGGAG	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	134
BshFI	GGCC	1 cut(s)	95
BsiEI	CGRYCG	1 cut(s)	134
BsiSI	CCGG	2 cut(s)	134, 174
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	355
BsmAI	GTCTC	3 cut(s)	155, 205, 363
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	2 cut(s)	155, 205
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	3 cut(s)	67, 186, 397
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	95
BspMAI	CTGCAG	1 cut(s)	32
BspPI	GGATC	1 cut(s)	392
BspTNI	GGTCTC	2 cut(s)	155, 205
BsrDI	GCAATG	1 cut(s)	441
BsrGI	TGTACA	1 cut(s)	315
BssMI	GATC	3 cut(s)	67, 186, 397
Bst4CI	ACNGT	3 cut(s)	193, 208, 273
BstAUI	TGTACA	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	3 cut(s)	11, 48, 90
BstF5I	GGATG	1 cut(s)	343
BstKTI	GATC	3 cut(s)	70, 189, 400
BstMAI	GTCTC	3 cut(s)	155, 205, 363
BstMBI	GATC	3 cut(s)	67, 186, 397
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	133
BstSFI	CTRYAG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	2 cut(s)	204, 221
Cac8I	GCNNGC	1 cut(s)	143
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	5 cut(s)	142, 184, 221, 355, 431
CviJI	RGCY	8 cut(s)	10, 36, 45, 89, 95, 127, 310, 404
CviKI_1	RGCY	8 cut(s)	10, 36, 45, 89, 95, 127, 310, 404
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	3 cut(s)	11, 48, 90
DpnI	GATC	3 cut(s)	69, 188, 399
DpnII	GATC	3 cut(s)	67, 186, 397
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
Eco31I	GGTCTC	2 cut(s)	155, 205
Eco57I	CTGAAG	1 cut(s)	22
FaeI	CATG	5 cut(s)	145, 187, 224, 358, 434
FaiI	YATR	7 cut(s)	143, 185, 222, 290, 356, 407, 432
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	5 cut(s)	141, 183, 220, 354, 430
FauI	CCCGC	1 cut(s)	52
FbaI	TGATCA	2 cut(s)	67, 186
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	2 cut(s)	134, 174
Hin1II	CATG	5 cut(s)	145, 187, 224, 358, 434
HindIII	AAGCTT	1 cut(s)	34
HpaII	CCGG	2 cut(s)	134, 174
HphI	GGTGA	4 cut(s)	122, 181, 292, 353
Hpy188I	TCNGA	3 cut(s)	72, 153, 479
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	3 cut(s)	67, 373, 403
HpyCH4III	ACNGT	3 cut(s)	193, 208, 273
HpyCH4V	TGCA	3 cut(s)	30, 446, 459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	3 cut(s)	11, 48, 90
Hsp92II	CATG	5 cut(s)	145, 187, 224, 358, 434
Ksp22I	TGATCA	2 cut(s)	67, 186
Kzo9I	GATC	3 cut(s)	67, 186, 397
LmnI	GCTCC	2 cut(s)	124, 396
LpnPI	CCDG	3 cut(s)	147, 187, 414
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	1 cut(s)	414
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	3 cut(s)	69, 188, 399
MboI	GATC	3 cut(s)	67, 186, 397
MflI	RGATCY	1 cut(s)	397
MluCI	AATT	1 cut(s)	257
MnlI	CCTC	8 cut(s)	6, 15, 131, 147, 150, 172, 286, 328
MseI	TTAA	3 cut(s)	54, 195, 260
MspI	CCGG	2 cut(s)	134, 174
MspR9I	CCNGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	42
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	3 cut(s)	67, 186, 397
NlaIII	CATG	5 cut(s)	145, 187, 224, 358, 434
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	145
PaeI	GCATGC	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SaqAI	TTAA	3 cut(s)	54, 195, 260
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	3 cut(s)	67, 186, 397
ScrFI	CCNGG	1 cut(s)	135
SfaNI	GCATC	1 cut(s)	414
SfcI	CTRYAG	1 cut(s)	28
SphI	GCATGC	1 cut(s)	145
Sse9I	AATT	1 cut(s)	257
SsiI	CCGC	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	133
TaaI	ACNGT	3 cut(s)	193, 208, 273
TaqI	TCGA	2 cut(s)	130, 234
TasI	AATT	1 cut(s)	257
TatI	WGTACW	1 cut(s)	315
Tru1I	TTAA	3 cut(s)	54, 195, 260
Tru9I	TTAA	3 cut(s)	54, 195, 260
TscAI	CASTG	2 cut(s)	211, 221
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	1 cut(s)	42
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	4 cut(s)	20, 419, 422, 431
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	2 cut(s)	211, 221
XceI	RCATGY	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.