Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013176

Physical Location & Seq

Genomic Coordinates Reverse (-)

26357343 .. 26358464

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G296800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATTAAGTTGAGGTCAAAGAGGTTTTGCAGAAGCTTTAGCAGCTGTAAGCTCATTAGCAGTAATAATAACAAGATTAAAGCTGCTGCTGCTGATCAAAGTAAGGAGTTTGGAGGAGCCATTAATAACAATGGTGAAATCAAATGGGAGCTTCGACCAGGAGGCATGCTTGTTCAAAGGAGAGAGACTGCGGCTGAAAGCAGTGCTGGAGAGGTCTTGATCACAGTTAGAGTCTCAGCTGTGTCTCATTGCCATGACATCTCCATTGAAGCTACTTCAACATTTGGCGAATTAAAGATGATATTGTCATTGGTGACTGGCATGGAGGCAAGAGAGCAGAGGCTGCTTTACAAAGGGAAACAGAGAGAGGATGGTGAATATCTACACATGGTGGGTGTTAGAGACAAGGACAAAGTGCTTTTGCTCCAAGATCCAGCCATCAAGGCAATGAAGCTTCATGGAATCGGAACTTCTACGACGTGTCGTACGATTAGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

167

Amino Acids

18.31

Weight (kDa)

9.51

Isoelectric Point (pI)

39.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14360
fragaria_vesca	FvH4_6g52220
malus_domestica	MD09G1019600.v1.1 MD17G1020200.v1.1
prunus_persica	Prupe.3G296800_v2.0.a1
pyrus_communis	pycom111g01630 pycom17g01680
rosa_chinensis	RchiOBHm_Chr2g0173771
rosa_laevigata	RLG00000022220
rosa_multiflora	Rmu_sc0002538.1_g000001 Rmu_sc0003188.1_g000005
rosa_roxburghii	Rroxscaffold_2G00078640
rosa_rugosa	Rorug02G0572600
rosa_samantha	Rh2AG651600 Rh2BG662200 Rh2CG627000 Rh2DG677400
rosa_wichuraiana	Rw2G053490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	1 cut(s)	425
AdeI	CACNNNGTG	1 cut(s)	391
AfaI	GTAC	1 cut(s)	487
AflIII	ACRYGT	1 cut(s)	479
AgsI	TTSAA	3 cut(s)	176, 269, 279
AjiI	CACGTC	1 cut(s)	480
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	8 cut(s)	36, 45, 52, 83, 151, 239, 272, 454
AluI	AGCT	8 cut(s)	36, 45, 52, 83, 151, 239, 272, 454
Alw26I	GTCTC	4 cut(s)	179, 238, 249, 396
AlwI	GGATC	1 cut(s)	425
AlwNI	CAGNNNCTG	1 cut(s)	343
ApeKI	GCWGC	5 cut(s)	42, 83, 86, 89, 343
AseI	ATTAAT	1 cut(s)	123
AsuHPI	GGTGA	3 cut(s)	146, 325, 386
BbvI	GCAGC	5 cut(s)	54, 70, 73, 76, 330
BccI	CCATC	2 cut(s)	365, 446
BciT130I	CCWGG	1 cut(s)	159
BclI	TGATCA	2 cut(s)	94, 219
BcoDI	GTCTC	4 cut(s)	179, 238, 249, 396
BglI	GCCNNNNNGGC	1 cut(s)	443
BisI	GCNGC	6 cut(s)	43, 84, 87, 90, 192, 344
BlsI	GCNGC	6 cut(s)	44, 85, 88, 91, 193, 345
Bme1390I	CCNGG	1 cut(s)	159
BmgBI	CACGTC	1 cut(s)	480
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	159
BpmI	CTGGAG	1 cut(s)	228
Bse1I	ACTGG	1 cut(s)	322
Bse3DI	GCAATG	2 cut(s)	247, 453
BseBI	CCWGG	1 cut(s)	159
BseGI	GGATG	1 cut(s)	376
BseMI	GCAATG	2 cut(s)	247, 453
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	5 cut(s)	54, 70, 73, 76, 330
BsiWI	CGTACG	1 cut(s)	485
BsmAI	GTCTC	4 cut(s)	179, 238, 249, 396
Bsp143I	GATC	3 cut(s)	94, 219, 430
BspACI	CCGC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	248
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	1 cut(s)	425
BsrDI	GCAATG	2 cut(s)	247, 453
BsrI	ACTGG	1 cut(s)	322
BssMI	GATC	3 cut(s)	94, 219, 430
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	226
BstAPI	GCANNNNNTGC	1 cut(s)	343
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	235
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	3 cut(s)	97, 222, 433
BstMAI	GTCTC	4 cut(s)	179, 238, 249, 396
BstMBI	GATC	3 cut(s)	94, 219, 430
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 89, 343, 443
BstNI	CCWGG	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	157
BstV1I	GCAGC	5 cut(s)	54, 70, 73, 76, 330
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BtrI	CACGTC	1 cut(s)	480
BtsCI	GGATG	1 cut(s)	376
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	167
CaiI	CAGNNNCTG	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	486
CviAII	CATG	5 cut(s)	166, 254, 322, 388, 458
CviQI	GTAC	1 cut(s)	486
DdeI	CTNAG	1 cut(s)	235
DpnI	GATC	3 cut(s)	96, 221, 432
DpnII	GATC	3 cut(s)	94, 219, 430
DraIII	CACNNNGTG	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	157
FaeI	CATG	5 cut(s)	169, 257, 325, 391, 461
FaiI	YATR	6 cut(s)	167, 255, 323, 389, 459, 499
FatI	CATG	5 cut(s)	165, 253, 321, 387, 457
FbaI	TGATCA	2 cut(s)	94, 219
Fnu4HI	GCNGC	6 cut(s)	43, 84, 87, 90, 192, 344
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	6 cut(s)	43, 84, 87, 90, 192, 344
GluI	GCNGC	6 cut(s)	43, 84, 87, 90, 192, 344
GsuI	CTGGAG	1 cut(s)	228
Hin1II	CATG	5 cut(s)	169, 257, 325, 391, 461
HindIII	AAGCTT	2 cut(s)	34, 452
HinfI	GANTC	2 cut(s)	231, 462
HphI	GGTGA	3 cut(s)	146, 325, 386
Hpy188I	TCNGA	1 cut(s)	467
Hpy188III	TCNNGA	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	481
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	1 cut(s)	479
HpyCH4V	TGCA	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 89, 343, 443
HpyF3I	CTNAG	1 cut(s)	235
HpySE526I	ACGT	1 cut(s)	479
Hsp92II	CATG	5 cut(s)	169, 257, 325, 391, 461
Ksp22I	TGATCA	2 cut(s)	94, 219
Kzo9I	GATC	3 cut(s)	94, 219, 430
LmnI	GCTCC	3 cut(s)	116, 148, 429
LpnPI	CCDG	5 cut(s)	144, 171, 192, 303, 447
Lsp1109I	GCAGC	5 cut(s)	54, 70, 73, 76, 330
MaeII	ACGT	1 cut(s)	479
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	3 cut(s)	96, 221, 432
MboI	GATC	3 cut(s)	94, 219, 430
MflI	RGATCY	1 cut(s)	430
MluCI	AATT	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	240
MnlI	CCTC	8 cut(s)	6, 15, 107, 155, 205, 319, 333, 361
MseI	TTAA	4 cut(s)	6, 78, 123, 293
MslI	CAYNNNNRTG	1 cut(s)	252
MspA1I	CMGCKG	2 cut(s)	45, 239
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	4 cut(s)	42, 89, 343, 443
NdeII	GATC	3 cut(s)	94, 219, 430
NlaIII	CATG	5 cut(s)	169, 257, 325, 391, 461
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	169
PaeI	GCATGC	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	462
Pfl23II	CGTACG	1 cut(s)	485
PkrI	GCNGC	6 cut(s)	44, 85, 88, 91, 193, 345
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PshBI	ATTAAT	1 cut(s)	123
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspLI	CGTACG	1 cut(s)	485
PspN4I	GGNNCC	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	430
PvuII	CAGCTG	2 cut(s)	45, 239
RsaI	GTAC	1 cut(s)	487
RsaNI	GTAC	1 cut(s)	486
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	4 cut(s)	6, 78, 123, 293
SatI	GCNGC	6 cut(s)	43, 84, 87, 90, 192, 344
Sau3AI	GATC	3 cut(s)	94, 219, 430
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	252
SphI	GCATGC	1 cut(s)	169
Sse9I	AATT	1 cut(s)	290
SsiI	CCGC	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	1 cut(s)	482
TaqI	TCGA	1 cut(s)	154
TasI	AATT	1 cut(s)	290
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	462
Tru1I	TTAA	4 cut(s)	6, 78, 123, 293
Tru9I	TTAA	4 cut(s)	6, 78, 123, 293
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	5 cut(s)	42, 83, 86, 89, 343
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	2 cut(s)	446, 464
TspRI	CASTG	1 cut(s)	208
VspI	ATTAAT	1 cut(s)	123
XceI	RCATGY	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.