pycom111g01630

BAG family molecular chaperone regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0013176
Physical Location & Seq
Forward (+)
1007685 .. 1008426
742 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g01630.1

Sequence Viewer

Length: 504 bp
ATGATTAAGTTGAGGTCAAACAGGTTTTGCAGAAGCTTTAGCAGTTGCAAGCTCATCAGCAGCAGCAGTAGTAAAAGCAAGAGTAAAGCTACTGATCAAAAGGAGTTTGGAGGAGGCAATATTAATAACAATAGTGAAATCAAATGGGAGCGTCGGCCGGGAGGCATGCTTGTTCAGAGGAGGGAGACAGCGGCCGAAAGCAGTGCCGGAGAAGGCATGATCACGGTTCGAGTGTCAACTGTGTCTCATTTCCGTGACATCTCCATTGAAGCCACTTCAACATTTGGCGAATTAAAGATGATACTGTCGCTGGTGACTGGTATGGAGGCAAGAGAGCAAAGGCTTCTTTACAAAGGAAAACAAAGAGAAGATGGTGAATATTTACACATGGTTGGAGTCAGAGACAAGGAGAAAGTGCTTCTGCTCCAAGATCCAGCTATCAAGGAAATGAAGCTTCTTCATGGAATTGGAACTCCTTCGACTTGTCGTTCGATTCGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

168

Amino Acids

18.68

Weight (kDa)

9.81

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 74 - 143 9.9e-09 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14360
fragaria_vesca FvH4_6g52220
malus_domestica MD09G1019600.v1.1 MD17G1020200.v1.1
prunus_persica Prupe.3G296800_v2.0.a1
pyrus_communis pycom111g01630 pycom17g01680
rosa_chinensis RchiOBHm_Chr2g0173771
rosa_laevigata RLG00000022220
rosa_multiflora Rmu_sc0002538.1_g000001 Rmu_sc0003188.1_g000005
rosa_roxburghii Rroxscaffold_2G00078640
rosa_rugosa Rorug02G0572600
rosa_samantha Rh2AG651600 Rh2BG662200 Rh2CG627000 Rh2DG677400
rosa_wichuraiana Rw2G053490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 191
AclWI GGATC 1 cut(s) 425
AcoI YGGCCR 2 cut(s) 155, 192
AgsI TTSAA 2 cut(s) 269, 279
AluBI AGCT 5 cut(s) 36, 52, 89, 437, 454
AluI AGCT 5 cut(s) 36, 52, 89, 437, 454
Alw26I GTCTC 3 cut(s) 179, 249, 396
AlwI GGATC 1 cut(s) 425
AoxI GGCC 2 cut(s) 155, 192
ApeKI GCWGC 2 cut(s) 60, 63
ArsI GACNNNNNNTTYG 2 cut(s) 472, 504
AseI ATTAAT 1 cut(s) 123
Asp700I GAANNNNTTC 1 cut(s) 475
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 2 cut(s) 325, 386
BbvI GCAGC 2 cut(s) 72, 75
BccI CCATC 1 cut(s) 365
BcgI CGANNNNNNTGC 2 cut(s) 185, 219
BclI TGATCA 2 cut(s) 94, 219
BcnI CCSGG 1 cut(s) 159
BcoDI GTCTC 3 cut(s) 179, 249, 396
BisI GCNGC 3 cut(s) 61, 64, 192
BlsI GCNGC 3 cut(s) 62, 65, 193
Bme1390I CCNGG 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 159
Bse1I ACTGG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 2 cut(s) 126, 193
BseX3I CGGCCG 2 cut(s) 155, 192
BseXI GCAGC 2 cut(s) 72, 75
Bsh1285I CGRYCG 2 cut(s) 158, 195
BshFI GGCC 2 cut(s) 157, 194
BsiEI CGRYCG 2 cut(s) 158, 195
BsiSI CCGG 2 cut(s) 158, 207
BsmAI GTCTC 3 cut(s) 179, 249, 396
BsnI GGCC 2 cut(s) 157, 194
Bsp143I GATC 3 cut(s) 94, 219, 430
BspACI CCGC 1 cut(s) 191
BspANI GGCC 2 cut(s) 157, 194
BspPI GGATC 1 cut(s) 425
BsrI ACTGG 1 cut(s) 322
BssMI GATC 3 cut(s) 94, 219, 430
Bst4CI ACNGT 3 cut(s) 226, 241, 306
BstC8I GCNNGC 2 cut(s) 50, 167
BstKTI GATC 3 cut(s) 97, 222, 433
BstMAI GTCTC 3 cut(s) 179, 249, 396
BstMBI GATC 3 cut(s) 94, 219, 430
BstMCI CGRYCG 2 cut(s) 158, 195
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 72, 75
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BstZI CGGCCG 2 cut(s) 155, 192
BsuRI GGCC 2 cut(s) 157, 194
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 2 cut(s) 50, 167
CseI GACGC 1 cut(s) 140
CviAII CATG 4 cut(s) 166, 217, 388, 461
CviJI RGCY 9 cut(s) 36, 52, 89, 157, 194, 272, 343, 437, 454
CviKI_1 RGCY 9 cut(s) 36, 52, 89, 157, 194, 272, 343, 437, 454
DpnI GATC 3 cut(s) 96, 221, 432
DpnII GATC 3 cut(s) 94, 219, 430
EaeI YGGCCR 2 cut(s) 155, 192
EagI CGGCCG 2 cut(s) 155, 192
EclXI CGGCCG 2 cut(s) 155, 192
Eco52I CGGCCG 2 cut(s) 155, 192
FaeI CATG 4 cut(s) 169, 220, 391, 464
FaiI YATR 5 cut(s) 167, 218, 323, 389, 462
FatI CATG 4 cut(s) 165, 216, 387, 460
FbaI TGATCA 2 cut(s) 94, 219
Fnu4HI GCNGC 3 cut(s) 61, 64, 192
Fsp4HI GCNGC 3 cut(s) 61, 64, 192
GluI GCNGC 3 cut(s) 61, 64, 192
HaeIII GGCC 2 cut(s) 157, 194
HapII CCGG 2 cut(s) 158, 207
HgaI GACGC 1 cut(s) 140
Hin1II CATG 4 cut(s) 169, 220, 391, 464
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HindIII AAGCTT 2 cut(s) 34, 452
HinfI GANTC 2 cut(s) 396, 493
HpaII CCGG 2 cut(s) 158, 207
HphI GGTGA 2 cut(s) 325, 386
Hpy166II GTNNAC 1 cut(s) 237
Hpy188I TCNGA 2 cut(s) 177, 401
Hpy8I GTNNAC 1 cut(s) 237
Hpy99I CGWCG 1 cut(s) 156
HpyAV CCTTC 2 cut(s) 206, 486
HpyCH4III ACNGT 3 cut(s) 226, 241, 306
HpyCH4V TGCA 2 cut(s) 30, 48
Hsp92II CATG 4 cut(s) 169, 220, 391, 464
Ksp22I TGATCA 2 cut(s) 94, 219
Kzo9I GATC 3 cut(s) 94, 219, 430
LmnI GCTCC 2 cut(s) 148, 429
LpnPI CCDG 6 cut(s) 7, 171, 220, 296, 303, 447
Lsp1109I GCAGC 2 cut(s) 72, 75
MaeIII GTNAC 2 cut(s) 254, 313
MalI GATC 3 cut(s) 96, 221, 432
MboI GATC 3 cut(s) 94, 219, 430
MboII GAAGA 2 cut(s) 380, 449
MflI RGATCY 1 cut(s) 430
MluCI AATT 2 cut(s) 290, 465
MlyI GAGTC 1 cut(s) 405
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 7 cut(s) 6, 104, 107, 155, 171, 174, 319
MroXI GAANNNNTTC 1 cut(s) 475
MseI TTAA 3 cut(s) 6, 123, 293
MslI CAYNNNNRTG 1 cut(s) 252
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 2 cut(s) 158, 207
MspR9I CCNGG 1 cut(s) 159
NciI CCSGG 1 cut(s) 159
NdeII GATC 3 cut(s) 94, 219, 430
NlaIII CATG 4 cut(s) 169, 220, 391, 464
NmuCI GTSAC 2 cut(s) 254, 313
NspI RCATGY 1 cut(s) 169
PaeI GCATGC 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 493
PdmI GAANNNNTTC 1 cut(s) 475
PfeI GAWTC 1 cut(s) 493
PkrI GCNGC 3 cut(s) 62, 65, 193
PleI GAGTC 1 cut(s) 404
PpsI GAGTC 1 cut(s) 404
PshBI ATTAAT 1 cut(s) 123
PsuI RGATCY 1 cut(s) 430
RseI CAYNNNNRTG 1 cut(s) 252
SaqAI TTAA 3 cut(s) 6, 123, 293
SatI GCNGC 3 cut(s) 61, 64, 192
Sau3AI GATC 3 cut(s) 94, 219, 430
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 1 cut(s) 159
SetI ASST 7 cut(s) 17, 26, 38, 54, 91, 439, 456
SmiMI CAYNNNNRTG 1 cut(s) 252
SphI GCATGC 1 cut(s) 169
Sse9I AATT 2 cut(s) 290, 465
SsiI CCGC 1 cut(s) 191
SspI AATATT 2 cut(s) 121, 380
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 3 cut(s) 226, 241, 306
TaqI TCGA 3 cut(s) 229, 479, 491
TasI AATT 2 cut(s) 290, 465
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 1 cut(s) 493
Tru1I TTAA 3 cut(s) 6, 123, 293
Tru9I TTAA 3 cut(s) 6, 123, 293
TscAI CASTG 1 cut(s) 208
TseFI GTSAC 2 cut(s) 254, 313
TseI GCWGC 2 cut(s) 60, 63
Tsp45I GTSAC 2 cut(s) 254, 313
TspDTI ATGAA 2 cut(s) 449, 464
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 1 cut(s) 208
VspI ATTAAT 1 cut(s) 123
XceI RCATGY 1 cut(s) 169
XmnI GAANNNNTTC 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.