Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0013176

Physical Location & Seq

Genomic Coordinates Forward (+)

1532731 .. 1533941

Gene Structure 1211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1020200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGATTAAGCTAAGGTCAAACAGGTTTTGCAGAAGCTTTAGCAGTTGCAAGCTCATCAGCAGCAGCAATTGTAAAAGCAAGAGTAAAGCTGCTGATCAAAAGGAGTTTGGAGGAGGCAATACTATTAGCAATGGTGAAATCAAATGGGAGCGTCGACCGGGAGGCATGCTTGTTCAGACAAGGGAGACGGCGGCCGAAAGCAGTGCCGGAGAAGGCATGATCACGGTTCGAGTGTCAACTGTGTCTCATTTCCATGATATCTCCATTGAAGCCACTTCCACATTTGGCGAATTAAAGATGATATTGTCACTGGTGAATGGTATGGAGGCAAGAGAGCAAAGACTTCTTTACAAAGGAAAACAAAGAGAGGATGGGGAATATTTACACATGGTTGGAGTTAGGGACAAGGAGAAAGTGCTTCTACTCCAAGATCCAGCTATCAAGGAAATGAAGCTTCTTCATGGAACTGGAACTCCTACGACTTGTCGTTCGATTCGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

168

Amino Acids

18.57

Weight (kDa)

9.51

Isoelectric Point (pI)

34.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	74 - 143	4.8e-09	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14360
fragaria_vesca	FvH4_6g52220
malus_domestica	MD09G1019600.v1.1 MD17G1020200.v1.1
prunus_persica	Prupe.3G296800_v2.0.a1
pyrus_communis	pycom111g01630 pycom17g01680
rosa_chinensis	RchiOBHm_Chr2g0173771
rosa_laevigata	RLG00000022220
rosa_multiflora	Rmu_sc0002538.1_g000001 Rmu_sc0003188.1_g000005
rosa_roxburghii	Rroxscaffold_2G00078640
rosa_rugosa	Rorug02G0572600
rosa_samantha	Rh2AG651600 Rh2BG662200 Rh2CG627000 Rh2DG677400
rosa_wichuraiana	Rw2G053490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	154
AciI	CCGC	1 cut(s)	191
AclWI	GGATC	1 cut(s)	425
AcoI	YGGCCR	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	269
AloI	GAACNNNNNNTCC	2 cut(s)	457, 489
AluBI	AGCT	6 cut(s)	10, 36, 52, 89, 437, 454
AluI	AGCT	6 cut(s)	10, 36, 52, 89, 437, 454
Alw26I	GTCTC	2 cut(s)	179, 249
AlwI	GGATC	1 cut(s)	425
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	3 cut(s)	60, 63, 89
ArsI	GACNNNNNNTTYG	2 cut(s)	472, 504
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	2 cut(s)	146, 325
BbvI	GCAGC	3 cut(s)	72, 75, 76
BccI	CCATC	1 cut(s)	365
BceAI	ACGGC	1 cut(s)	204
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BclI	TGATCA	2 cut(s)	94, 219
BcnI	CCSGG	1 cut(s)	159
BcoDI	GTCTC	2 cut(s)	179, 249
BisI	GCNGC	4 cut(s)	61, 64, 90, 192
BlsI	GCNGC	4 cut(s)	62, 65, 91, 193
Bme1390I	CCNGG	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	159
Bpu10I	CCTNAGC	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	159
BsaXI	ACNNNNNCTCC	2 cut(s)	457, 487
Bse1I	ACTGG	2 cut(s)	315, 472
Bse3DI	GCAATG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	376
BseMI	GCAATG	1 cut(s)	136
BseNI	ACTGG	2 cut(s)	315, 472
BseRI	GAGGAG	1 cut(s)	126
BseX3I	CGGCCG	1 cut(s)	192
BseXI	GCAGC	3 cut(s)	72, 75, 76
Bsh1285I	CGRYCG	2 cut(s)	158, 195
BshFI	GGCC	1 cut(s)	194
BsiEI	CGRYCG	2 cut(s)	158, 195
BsiSI	CCGG	2 cut(s)	158, 207
BslFI	GGGAC	1 cut(s)	416
BsmAI	GTCTC	2 cut(s)	179, 249
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	194
Bsp143I	GATC	3 cut(s)	94, 219, 430
BspACI	CCGC	1 cut(s)	191
BspANI	GGCC	1 cut(s)	194
BspPI	GGATC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	136
BsrI	ACTGG	2 cut(s)	315, 472
BssMI	GATC	3 cut(s)	94, 219, 430
Bst4CI	ACNGT	2 cut(s)	226, 241
BstC8I	GCNNGC	2 cut(s)	50, 167
BstDEI	CTNAG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	3 cut(s)	97, 222, 433
BstMAI	GTCTC	2 cut(s)	179, 249
BstMBI	GATC	3 cut(s)	94, 219, 430
BstMCI	CGRYCG	2 cut(s)	158, 195
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	157
BstV1I	GCAGC	3 cut(s)	72, 75, 76
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BstZI	CGGCCG	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	376
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	208, 308
Cac8I	GCNNGC	2 cut(s)	50, 167
CseI	GACGC	1 cut(s)	140
CviAII	CATG	5 cut(s)	166, 217, 254, 388, 461
CviJI	RGCY	8 cut(s)	10, 36, 52, 89, 194, 272, 437, 454
CviKI_1	RGCY	8 cut(s)	10, 36, 52, 89, 194, 272, 437, 454
DdeI	CTNAG	1 cut(s)	11
DpnI	GATC	3 cut(s)	96, 221, 432
DpnII	GATC	3 cut(s)	94, 219, 430
EaeI	YGGCCR	1 cut(s)	192
EagI	CGGCCG	1 cut(s)	192
EclXI	CGGCCG	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	259
Eco52I	CGGCCG	1 cut(s)	192
EcoRV	GATATC	1 cut(s)	259
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	5 cut(s)	169, 220, 257, 391, 464
FaiI	YATR	6 cut(s)	167, 218, 255, 323, 389, 462
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	5 cut(s)	165, 216, 253, 387, 460
FbaI	TGATCA	2 cut(s)	94, 219
FblI	GTMKAC	1 cut(s)	154
Fnu4HI	GCNGC	4 cut(s)	61, 64, 90, 192
FokI	GGATG	1 cut(s)	383
Fsp4HI	GCNGC	4 cut(s)	61, 64, 90, 192
GluI	GCNGC	4 cut(s)	61, 64, 90, 192
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	2 cut(s)	158, 207
HgaI	GACGC	1 cut(s)	140
Hin1II	CATG	5 cut(s)	169, 220, 257, 391, 464
HincII	GTYRAC	2 cut(s)	155, 237
HindII	GTYRAC	2 cut(s)	155, 237
HindIII	AAGCTT	2 cut(s)	34, 452
HinfI	GANTC	1 cut(s)	493
HpaII	CCGG	2 cut(s)	158, 207
HphI	GGTGA	2 cut(s)	146, 325
Hpy166II	GTNNAC	2 cut(s)	155, 237
Hpy188I	TCNGA	1 cut(s)	177
Hpy8I	GTNNAC	2 cut(s)	155, 237
Hpy99I	CGWCG	1 cut(s)	156
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	2 cut(s)	226, 241
HpyCH4V	TGCA	2 cut(s)	30, 48
HpyF3I	CTNAG	1 cut(s)	11
Hsp92II	CATG	5 cut(s)	169, 220, 257, 391, 464
Ksp22I	TGATCA	2 cut(s)	94, 219
Kzo9I	GATC	3 cut(s)	94, 219, 430
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	6 cut(s)	7, 171, 220, 296, 447, 453
Lsp1109I	GCAGC	3 cut(s)	72, 75, 76
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	3 cut(s)	96, 221, 432
MboI	GATC	3 cut(s)	94, 219, 430
MboII	GAAGA	1 cut(s)	449
MfeI	CAATTG	1 cut(s)	67
MflI	RGATCY	1 cut(s)	430
MluCI	AATT	2 cut(s)	67, 290
MmeI	TCCRAC	1 cut(s)	373
MnlI	CCTC	5 cut(s)	104, 107, 155, 319, 361
MseI	TTAA	2 cut(s)	6, 293
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	2 cut(s)	158, 207
MspR9I	CCNGG	1 cut(s)	159
MunI	CAATTG	1 cut(s)	67
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	3 cut(s)	94, 219, 430
NlaIII	CATG	5 cut(s)	169, 220, 257, 391, 464
NmuCI	GTSAC	1 cut(s)	306
NspI	RCATGY	1 cut(s)	169
PaeI	GCATGC	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	493
PfeI	GAWTC	1 cut(s)	493
PkrI	GCNGC	4 cut(s)	62, 65, 91, 193
PsuI	RGATCY	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	252
SalI	GTCGAC	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	6, 293
SatI	GCNGC	4 cut(s)	61, 64, 90, 192
Sau3AI	GATC	3 cut(s)	94, 219, 430
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	8 cut(s)	12, 17, 26, 38, 54, 91, 439, 456
SmiMI	CAYNNNNRTG	1 cut(s)	252
SphI	GCATGC	1 cut(s)	169
Sse9I	AATT	2 cut(s)	67, 290
SsiI	CCGC	1 cut(s)	191
SspI	AATATT	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	2 cut(s)	226, 241
TaqI	TCGA	3 cut(s)	154, 229, 491
TasI	AATT	2 cut(s)	67, 290
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	2 cut(s)	6, 293
Tru9I	TTAA	2 cut(s)	6, 293
TscAI	CASTG	2 cut(s)	208, 315
TseFI	GTSAC	1 cut(s)	306
TseI	GCWGC	3 cut(s)	60, 63, 89
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	2 cut(s)	449, 464
TspRI	CASTG	2 cut(s)	208, 315
XceI	RCATGY	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.