pycom17g01680

BAG family molecular chaperone regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013176
Physical Location & Seq
Forward (+)
1097902 .. 1098647
746 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g01680.1

Sequence Viewer

Length: 504 bp
ATGATTAAGCTGAGGTCAAACAGGTTTTGCAGAAGCTTTAGCAGTTGCAAGCTCATCAGCAGCAGCAATAGTAAAAGCAAGAGTAAAGCTGCTGATCAAAAGGAGCTTGGAGGAGGCAATATTATTAGCAATGGTGAAATCAAATGGGAGCGTCGACCGGGAGGCATGCTTGTTCAGACCAGGGAGACGGCGGCTGAAAGCCATGCCGGAGAAGGCATGATCACGGTTCGAGTGTCATCTGTGTCTCATTTCCATGATATCTCCATTGAAGCCACTTCCACATTTGGCGAATTAAAGATGATATTGTCACTGGTGACCGGTATGGAGGCAAGAGAGCAAAGACTTCTTTACAAAGGAAAACAAAGAGAGGATGGGGAATATTTACACATGGTTGGAGTTAGAGACAAGGAGAAAGTGCTTCTGCTCCAAGATCCAGCTATCAAGGAATTGAAGCTTCTTCATGGAACTGGAACTTCTACGACTTGTCGTTCAATTCGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

168

Amino Acids

18.53

Weight (kDa)

9.6

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 74 - 143 2.2e-09 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14360
fragaria_vesca FvH4_6g52220
malus_domestica MD09G1019600.v1.1 MD17G1020200.v1.1
prunus_persica Prupe.3G296800_v2.0.a1
pyrus_communis pycom111g01630 pycom17g01680
rosa_chinensis RchiOBHm_Chr2g0173771
rosa_laevigata RLG00000022220
rosa_multiflora Rmu_sc0002538.1_g000001 Rmu_sc0003188.1_g000005
rosa_roxburghii Rroxscaffold_2G00078640
rosa_rugosa Rorug02G0572600
rosa_samantha Rh2AG651600 Rh2BG662200 Rh2CG627000 Rh2DG677400
rosa_wichuraiana Rw2G053490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 154
AciI CCGC 1 cut(s) 191
AclWI GGATC 1 cut(s) 425
AgeI ACCGGT 1 cut(s) 317
AgsI TTSAA 3 cut(s) 269, 451, 492
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 7 cut(s) 10, 36, 52, 89, 106, 437, 454
AluI AGCT 7 cut(s) 10, 36, 52, 89, 106, 437, 454
Alw26I GTCTC 3 cut(s) 179, 249, 396
AlwI GGATC 1 cut(s) 425
ApeKI GCWGC 3 cut(s) 60, 63, 89
AsiGI ACCGGT 1 cut(s) 317
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 2 cut(s) 146, 325
BbvCI CCTCAGC 1 cut(s) 11
BbvI GCAGC 3 cut(s) 72, 75, 76
BccI CCATC 1 cut(s) 365
BceAI ACGGC 1 cut(s) 204
BciT130I CCWGG 1 cut(s) 181
BclI TGATCA 2 cut(s) 94, 219
BcnI CCSGG 1 cut(s) 159
BcoDI GTCTC 3 cut(s) 179, 249, 396
BisI GCNGC 4 cut(s) 61, 64, 90, 192
BlsI GCNGC 4 cut(s) 62, 65, 91, 193
Bme1390I CCNGG 2 cut(s) 159, 181
BmrFI CCNGG 2 cut(s) 159, 181
Bpu10I CCTNAGC 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 317
Bse118I RCCGGY 1 cut(s) 317
Bse1I ACTGG 2 cut(s) 315, 472
Bse3DI GCAATG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 376
BseMI GCAATG 1 cut(s) 136
BseNI ACTGG 2 cut(s) 315, 472
BseRI GAGGAG 1 cut(s) 126
BseXI GCAGC 3 cut(s) 72, 75, 76
Bsh1285I CGRYCG 1 cut(s) 158
BshTI ACCGGT 1 cut(s) 317
BsiEI CGRYCG 1 cut(s) 158
BsiSI CCGG 3 cut(s) 158, 207, 318
BsmAI GTCTC 3 cut(s) 179, 249, 396
BsmBI CGTCTC 1 cut(s) 179
Bsp143I GATC 3 cut(s) 94, 219, 430
BspACI CCGC 1 cut(s) 191
BspPI GGATC 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 317
BsrI ACTGG 2 cut(s) 315, 472
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 180
BssMI GATC 3 cut(s) 94, 219, 430
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 226
BstC8I GCNNGC 2 cut(s) 50, 167
BstDEI CTNAG 1 cut(s) 11
BstEII GGTNACC 1 cut(s) 313
BstF5I GGATG 1 cut(s) 376
BstKTI GATC 3 cut(s) 97, 222, 433
BstMAI GTCTC 3 cut(s) 179, 249, 396
BstMBI GATC 3 cut(s) 94, 219, 430
BstMCI CGRYCG 1 cut(s) 158
BstNI CCWGG 1 cut(s) 181
BstNSI RCATGY 1 cut(s) 169
BstPI GGTNACC 1 cut(s) 313
BstSCI CCNGG 2 cut(s) 157, 179
BstV1I GCAGC 3 cut(s) 72, 75, 76
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 308
Cac8I GCNNGC 2 cut(s) 50, 167
Cfr10I RCCGGY 1 cut(s) 317
CseI GACGC 1 cut(s) 140
CspAI ACCGGT 1 cut(s) 317
CviAII CATG 6 cut(s) 166, 203, 217, 254, 388, 461
DdeI CTNAG 1 cut(s) 11
DpnI GATC 3 cut(s) 96, 221, 432
DpnII GATC 3 cut(s) 94, 219, 430
Eco32I GATATC 1 cut(s) 259
Eco91I GGTNACC 1 cut(s) 313
EcoO65I GGTNACC 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 179
EcoRV GATATC 1 cut(s) 259
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 6 cut(s) 169, 206, 220, 257, 391, 464
FaiI YATR 7 cut(s) 167, 204, 218, 255, 323, 389, 462
FatI CATG 6 cut(s) 165, 202, 216, 253, 387, 460
FbaI TGATCA 2 cut(s) 94, 219
FblI GTMKAC 1 cut(s) 154
Fnu4HI GCNGC 4 cut(s) 61, 64, 90, 192
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 4 cut(s) 61, 64, 90, 192
GluI GCNGC 4 cut(s) 61, 64, 90, 192
HapII CCGG 3 cut(s) 158, 207, 318
HgaI GACGC 1 cut(s) 140
Hin1II CATG 6 cut(s) 169, 206, 220, 257, 391, 464
HincII GTYRAC 1 cut(s) 155
HindII GTYRAC 1 cut(s) 155
HindIII AAGCTT 2 cut(s) 34, 452
HpaII CCGG 3 cut(s) 158, 207, 318
HphI GGTGA 2 cut(s) 146, 325
Hpy166II GTNNAC 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 177
Hpy8I GTNNAC 1 cut(s) 155
Hpy99I CGWCG 1 cut(s) 156
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 2 cut(s) 30, 48
HpyF3I CTNAG 1 cut(s) 11
Hsp92II CATG 6 cut(s) 169, 206, 220, 257, 391, 464
Ksp22I TGATCA 2 cut(s) 94, 219
Kzo9I GATC 3 cut(s) 94, 219, 430
LmnI GCTCC 3 cut(s) 103, 148, 429
LpnPI CCDG 9 cut(s) 7, 166, 171, 193, 220, 296, 331, 447, 453
Lsp1109I GCAGC 3 cut(s) 72, 75, 76
MaeIII GTNAC 2 cut(s) 306, 313
MalI GATC 3 cut(s) 96, 221, 432
MboI GATC 3 cut(s) 94, 219, 430
MboII GAAGA 1 cut(s) 449
MflI RGATCY 1 cut(s) 430
MluCI AATT 3 cut(s) 290, 446, 492
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 6 cut(s) 6, 104, 107, 155, 319, 361
MseI TTAA 2 cut(s) 6, 293
MslI CAYNNNNRTG 1 cut(s) 252
MspI CCGG 3 cut(s) 158, 207, 318
MspR9I CCNGG 2 cut(s) 159, 181
MvaI CCWGG 1 cut(s) 181
NciI CCSGG 1 cut(s) 159
NdeII GATC 3 cut(s) 94, 219, 430
NlaIII CATG 6 cut(s) 169, 206, 220, 257, 391, 464
NmuCI GTSAC 2 cut(s) 306, 313
NspI RCATGY 1 cut(s) 169
PaeI GCATGC 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 493
PinAI ACCGGT 1 cut(s) 317
PkrI GCNGC 4 cut(s) 62, 65, 91, 193
Psp6I CCWGG 1 cut(s) 179
PspEI GGTNACC 1 cut(s) 313
PspGI CCWGG 1 cut(s) 179
PsuI RGATCY 1 cut(s) 430
RseI CAYNNNNRTG 1 cut(s) 252
SalI GTCGAC 1 cut(s) 153
SaqAI TTAA 2 cut(s) 6, 293
SatI GCNGC 4 cut(s) 61, 64, 90, 192
Sau3AI GATC 3 cut(s) 94, 219, 430
ScrFI CCNGG 2 cut(s) 159, 181
SetI ASST 9 cut(s) 12, 17, 26, 38, 54, 91, 108, 439, 456
SmiMI CAYNNNNRTG 1 cut(s) 252
SphI GCATGC 1 cut(s) 169
Sse9I AATT 3 cut(s) 290, 446, 492
SsiI CCGC 1 cut(s) 191
SspI AATATT 2 cut(s) 121, 380
StyD4I CCNGG 2 cut(s) 157, 179
TaaI ACNGT 1 cut(s) 226
TaqI TCGA 2 cut(s) 154, 229
TasI AATT 3 cut(s) 290, 446, 492
TauI GCSGC 1 cut(s) 194
Tru1I TTAA 2 cut(s) 6, 293
Tru9I TTAA 2 cut(s) 6, 293
TscAI CASTG 1 cut(s) 315
TseFI GTSAC 2 cut(s) 306, 313
TseI GCWGC 3 cut(s) 60, 63, 89
Tsp45I GTSAC 2 cut(s) 306, 313
TspDTI ATGAA 1 cut(s) 449
TspRI CASTG 1 cut(s) 315
XceI RCATGY 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.