RLG00000022220

BAG family molecular chaperone regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013176
Physical Location & Seq
Reverse (-)
81789426 .. 81790696
1271 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022220

Sequence Viewer

Length: 480 bp
ATGATGAAGCTGAGGTCAAAGAGGTTCTGCAGAAGCTTCAGCAGCTCTAAGATTAAGGCGGGGACTGATCAGAAGGGTCAGTTTGAAGCTAAGGCCATCAAGGTTGATGGTGAAATCAAGTGGGAGCTTCGTCCGGGAGGCATGCTTGTTCAGAGGAGGGAGACTCCAAACGCCGGAGAGGGCATGATCACCGTTAAGGTCTCCACTGTTTCGCAGTGGCATGACATCTCCGTCGAACCCACTTCTACTTTCGGCGAATTAAAAATGATACTGTCATTGGTGACGGGTATGGAGGCAAGAGAGCAAAGGCTGTTGTTCAAAGGGAAAGAAAGAGAGGATGGTGAATACCTACACATGGTTGGAGTTAGAGACAAAGAGAAGGTGTTGTTGCTCCAAGATCCAGCTATGAAGGAGATGAAGCAGATGCTTCATGGAAGTAACATTGCAACTTCTACCTGCAGTCGCACCATTAGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

160

Amino Acids

17.94

Weight (kDa)

9.54

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 63 - 132 3.3e-10 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013176)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14360
fragaria_vesca FvH4_6g52220
malus_domestica MD09G1019600.v1.1 MD17G1020200.v1.1
prunus_persica Prupe.3G296800_v2.0.a1
pyrus_communis pycom111g01630 pycom17g01680
rosa_chinensis RchiOBHm_Chr2g0173771
rosa_laevigata RLG00000022220
rosa_multiflora Rmu_sc0002538.1_g000001 Rmu_sc0003188.1_g000005
rosa_roxburghii Rroxscaffold_2G00078640
rosa_rugosa Rorug02G0572600
rosa_samantha Rh2AG651600 Rh2BG662200 Rh2CG627000 Rh2DG677400
rosa_wichuraiana Rw2G053490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
Acc36I ACCTGC 1 cut(s) 464
AciI CCGC 1 cut(s) 59
AclWI GGATC 1 cut(s) 392
AcuI CTGAAG 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 173, 355
AgsI TTSAA 2 cut(s) 86, 319
AluBI AGCT 6 cut(s) 10, 36, 45, 89, 127, 404
AluI AGCT 6 cut(s) 10, 36, 45, 89, 127, 404
Alw26I GTCTC 3 cut(s) 155, 205, 363
AlwI GGATC 1 cut(s) 392
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 42
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 4 cut(s) 122, 181, 292, 353
BbvCI CCTCAGC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 54
BccI CCATC 3 cut(s) 101, 104, 332
BclI TGATCA 2 cut(s) 67, 186
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 3 cut(s) 155, 205, 363
BfmI CTRYAG 2 cut(s) 28, 457
BfuAI ACCTGC 1 cut(s) 464
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 135
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 1 cut(s) 414
BplI GAGNNNNNCTC 2 cut(s) 148, 180
Bpu10I CCTNAGC 2 cut(s) 11, 90
BpuMI CCSGG 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 205
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 355
Bse3DI GCAATG 1 cut(s) 441
BseGI GGATG 1 cut(s) 343
BseLI CCNNNNNNNGG 2 cut(s) 173, 355
BseMI GCAATG 1 cut(s) 441
BseRI GAGGAG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 54
BshFI GGCC 1 cut(s) 95
BsiSI CCGG 2 cut(s) 134, 174
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 2 cut(s) 173, 355
BsmAI GTCTC 3 cut(s) 155, 205, 363
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 205
Bsp143I GATC 3 cut(s) 67, 186, 397
BspACI CCGC 1 cut(s) 59
BspANI GGCC 1 cut(s) 95
BspMAI CTGCAG 2 cut(s) 32, 461
BspMI ACCTGC 1 cut(s) 464
BspPI GGATC 1 cut(s) 392
BspTNI GGTCTC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 441
BssMI GATC 3 cut(s) 67, 186, 397
Bst4CI ACNGT 3 cut(s) 193, 208, 273
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 3 cut(s) 11, 48, 90
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 3 cut(s) 70, 189, 400
BstMAI GTCTC 3 cut(s) 155, 205, 363
BstMBI GATC 3 cut(s) 67, 186, 397
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstNSI RCATGY 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 133
BstSFI CTRYAG 2 cut(s) 28, 457
BstV1I GCAGC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 397
BstYI RGATCY 1 cut(s) 397
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 343
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 2 cut(s) 204, 221
BveI ACCTGC 1 cut(s) 464
Cac8I GCNNGC 1 cut(s) 143
CviAII CATG 5 cut(s) 142, 184, 221, 355, 431
CviJI RGCY 8 cut(s) 10, 36, 45, 89, 95, 127, 310, 404
CviKI_1 RGCY 8 cut(s) 10, 36, 45, 89, 95, 127, 310, 404
DdeI CTNAG 3 cut(s) 11, 48, 90
DpnI GATC 3 cut(s) 69, 188, 399
DpnII GATC 3 cut(s) 67, 186, 397
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
Eco31I GGTCTC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 22
FaeI CATG 5 cut(s) 145, 187, 224, 358, 434
FaiI YATR 7 cut(s) 143, 185, 222, 290, 356, 407, 432
FaqI GGGAC 1 cut(s) 76
FatI CATG 5 cut(s) 141, 183, 220, 354, 430
FauI CCCGC 1 cut(s) 52
FbaI TGATCA 2 cut(s) 67, 186
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 43
HaeIII GGCC 1 cut(s) 95
HapII CCGG 2 cut(s) 134, 174
Hin1II CATG 5 cut(s) 145, 187, 224, 358, 434
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 1 cut(s) 163
HpaII CCGG 2 cut(s) 134, 174
HphI GGTGA 4 cut(s) 122, 181, 292, 353
Hpy188I TCNGA 3 cut(s) 72, 153, 479
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 3 cut(s) 67, 373, 403
HpyCH4III ACNGT 3 cut(s) 193, 208, 273
HpyCH4V TGCA 3 cut(s) 30, 446, 459
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 3 cut(s) 11, 48, 90
Hsp92II CATG 5 cut(s) 145, 187, 224, 358, 434
Ksp22I TGATCA 2 cut(s) 67, 186
Kzo9I GATC 3 cut(s) 67, 186, 397
LmnI GCTCC 2 cut(s) 124, 396
LpnPI CCDG 4 cut(s) 147, 187, 414, 469
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 1 cut(s) 414
MaeIII GTNAC 2 cut(s) 280, 437
MalI GATC 3 cut(s) 69, 188, 399
MboI GATC 3 cut(s) 67, 186, 397
MflI RGATCY 1 cut(s) 397
MluCI AATT 1 cut(s) 257
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 8 cut(s) 6, 15, 131, 147, 150, 172, 286, 328
MseI TTAA 3 cut(s) 54, 195, 260
MspI CCGG 2 cut(s) 134, 174
MspR9I CCNGG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 42
NciI CCSGG 1 cut(s) 135
NdeII GATC 3 cut(s) 67, 186, 397
NlaIII CATG 5 cut(s) 145, 187, 224, 358, 434
NmuCI GTSAC 1 cut(s) 280
NspI RCATGY 1 cut(s) 145
PaeI GCATGC 1 cut(s) 145
PfoI TCCNGGA 1 cut(s) 133
PkrI GCNGC 1 cut(s) 44
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PstI CTGCAG 2 cut(s) 32, 461
PsuI RGATCY 1 cut(s) 397
SaqAI TTAA 3 cut(s) 54, 195, 260
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 3 cut(s) 67, 186, 397
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 135
SfaNI GCATC 1 cut(s) 414
SfcI CTRYAG 2 cut(s) 28, 457
SphI GCATGC 1 cut(s) 145
Sse9I AATT 1 cut(s) 257
SsiI CCGC 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 133
TaaI ACNGT 3 cut(s) 193, 208, 273
TaqI TCGA 1 cut(s) 234
TasI AATT 1 cut(s) 257
Tru1I TTAA 3 cut(s) 54, 195, 260
Tru9I TTAA 3 cut(s) 54, 195, 260
TscAI CASTG 2 cut(s) 211, 221
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 4 cut(s) 20, 419, 422, 431
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 2 cut(s) 211, 221
XceI RCATGY 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.