Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004785

Physical Location & Seq

Genomic Coordinates Reverse (-)

4697207 .. 4703091

Gene Structure 5885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G14580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2976 bp

ATGTCATCGATTGTGAATCGAGCTAGTTCAGCTTCTCTTCCTAATTTCCTCGCATGGCGTGCTCTGGGGTTTCGCACCATCTGCTCCGGCCGCCTTGGTTTCGCTCCGTCTGTTCCAGACTCGCCGGTCTCCGCAGGAACCAAAATTTTGGAATCATTTAAGGAGGAATTCGAAGTCGGATCCCGCGTGGTCTCGTTTGAGACTGGAAAAATCGCTCGCTTTGCTAATGGTTCAGTTGTTCTCGGCATGGACGAGACCAAAGTTCTCTCTACTGTTACTTGTGCTAAGACCGACTCGCCTCGGGACTTCTTACCTCTCACTGTTGACTATCAAGAGAAGCAATACGCTCAGGGATTGATTCCAAATACGTATATGCGAAGAGAGGGTGCACCAAAGGAGCGGGAGCTGTTATGTGGCCGGCTCATTGATAGACCAATCAGACCATTGTTTCCTACAGGGTTTTACCATGAAGTTCAGATAATGGCAAGTGTTCTATCGTCAGATGGGAAGCAGGATCCAGATATACTGGCAGCTAATGCATCATCAGCTGCGCTCATGCTATCAGATGTTCCATGGGGAGGGCCCATTGGAGTCATCCGGATAGGAAGGATATGTGGGCAATTTGTTGTCAATCCAACTATGGATGAGCTTAGCTCAAGTGATCTCAATTTGATATACGCTTGCACAAGGGATAAGACTATGATGATTGATGTTCAATCCCGAGAAATCTCAGAGAAAGATTTAGCAGCTGCTCTGAGGCTAGCTCATCCAGAGGCTGTCAAGTACCTTGATCCCCAAATTAGATTGGCAGAAAAAGCTGGGAAACAAAAGAAGGAGTACAAATTGTCCATGCTTTCTGATAAAACTTTAGAAAAAGTGGCTGACTTGGCTGCAACGCGTATTGAATCCGTCTTTACCGACCCTTCATATGGAAAGTTTGAACGTGGAGAGGCTCTAGATAACATTGGAAAAGATGTAAGAAAGGTATTTGAAGAAGAGGGTGATCAAGAAAGCTTGAGCATCCTTCCAAAGGCTGTTGATACAGTGAGAAAGAAGGTAGTCCGTTCAAGGATGATATCAGATGGATTTCGAGTCGACGGGAGACATGTTGATGAAGTTAGGCCCATCTACTGCGAATCGCATTACTTACCTGCGCTGCATGGATCAGCACTTTTCTCACGTGGAGATACGCAGGTGCTCTGTACTGTAACACTTGGAGCCCCAGCAGAAGCACAAAGCTTGGATTCTCTTGTTGGCCCCCCGAAGAAGAGATTCATGCTTCACTACAGCTTTCCTCCATATTGTACAAATGAAGTCGGAAAACGAGGAGGCCTTAACAGGCGTGAAGTTGGTCATGGAACACTTGCTGAGAAAGCATTGCTTGCTGTATTGCCCCCTGAAGAGGCTTTTCCTTATACCATTCGTATAAATTCAGAAGTAATGTCCTCAGATGGATCCACGTCGATGGCAAGCGTTTGTGGAGGTAGTATGGCATTGATGGATGCTGGAATTCCTCTGCGAGCTCATGTTGCGGGTGTATCTGTTGGTCTTATCACCGATGTAGATCCATCAAGTGGTGAAATAAAGGACTACCGTATTGTAACCGATATTCTCGGTTTGGAAGATCATCTTGGAGATATGGATTTCAAGATTGCTGGCACACGAGATGGTGTGACAGCAATTCAGCTGGATATAAAGCCAGCTGGAATACCGTTGGATATAGTTTGTGAATCCTTAGAAAATGCACGTGAAGCCCGTCTTCAGATTCTTGACCACATGGAGAGAAACATAAATTCCCCACGAGGCCAGGATGGGGCTTACTCTCCTCGGCTAGCAACGCTCAAGTACTCCAATGACTCACTTCGTACCTTGATCGGACCTATGGGTGTACTCAAAAGAAAGATTGAAGTGGAAACAGGTGCAAGATTGTCTATTGATAATGGAACATTAACTATTGTTGCCAAGAATCAGGATGTGATGGAAAAGGCCCAAGAACAAGTTGACTTCATCATTGGTCGTGAACTAGTTGTTGGTGGTGTGTACAAAGGCACAGTGTCATCTATAAAAGAGTATGGTGCATTTGTTGAGTTCCCTGGTGGTCAGCAAGGTCTACTACATATGTCTGAGCTATCCCATGAACCAGTCTCCAAGGTTTCAGATGTATTAGATATTGGCCAGTGCATCACTACGATGTGCATTGAAACCGATGTCCGTGGTAACATTAAATTATCCCGCAAAGCACTGTTGCCCAAACCCAAACGCAAACCCGCATCTGATGCTGGAAAAGATCCGGTGATGAAAGAGTCGTCAACAGTCTACATAGAAAATTCTAGTGTTGGAGAGATTGTTGCAAGCATGCCCAGTATCGTAACGCCACTTCAGAAATCTAGATTATCAGTTCCTGCAGTTGTCATCCGTACTGCTGTGGAGTGTAATGAGGCAGAGAAATCTTCCCCTGTGAACGACAACGACAAACCCAGACGCGCTGCTACATCAAAGCCAGACCGGAAACCCAAATCCACAGCCTCTAAACTGATTGCGACACAGAAGGAAGAGGAGGCACTCGAATCCATTGCTCCAGAAGAAACTTCAGCTGAATGTGGTGAGATACTGAAGCAGGACGGGAAGCTAAAATCCGTTTCTCCCAAAAACAATAGCACTGCTTCTAACCTAGTATCATTTTCAAAAGCTAAGAAATCAACTATGAAGGAGAATCTATCAGAGAACAAGGCTGAAGAGAGTGCATCGGTTAGTACCCGAAAACTGAAAATAGGAACGGAGATGACAGCCACGGTCGACCATGTTCGAGCCCTTGGATTGGTTCTTGATTTAGGTGGTGAAATCCGCGGTATGTACATATTCCAGGGAGATAAAGATAAGTTCAAAAAAGGAGACACATTGCGAGTGAAATGTACAAGTTTTAACACCAAAGGAGTCCCTGTGATGGCTTTGGTTGACGAAGAGGGAGAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000957 GO:0000959 GO:0000963 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0004654 GO:0006139 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140053 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko03018 map00230 map00240 map03018

Pfam Domains

Protein Families

KH_1 PNPase RNase_PH RNase_PH_C S1

Protein Analysis

991

Amino Acids

107.77

Weight (kDa)

6.24

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	62 - 191	8.7e-28	3' exoribonuclease family, domain 1
RNase_PH_C	PF03725	194 - 256	9.6e-11	3' exoribonuclease family, domain 2
PNPase	PF03726	290 - 369	2.2e-19	Polyribonucleotide nucleotidyltransferase, RNA binding domain
RNase_PH	PF01138	372 - 505	2.5e-30	3' exoribonuclease family, domain 1
S1	PF00575	677 - 746	4e-11	S1 RNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14580
fragaria_vesca	FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050
malus_domestica	MD17G1031200.v1.1
prunus_persica	Prupe.3G288400_v2.0.a1
pyrus_communis	pycom17g02860
rosa_chinensis	RchiOBHm_Chr2g0172601
rosa_laevigata	RLG00000016016 RLG00000022119
rosa_multiflora	Rmu_sc0000912.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079710
rosa_rugosa	Rorug01G0489200 Rorug02G0560200
rosa_samantha	Rh2AG636600 Rh2BG650000 Rh2CG616700 Rh2DG044700 Rh2DG664200
rosa_wichuraiana	Rw2G003770 Rw2G052650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1183
AasI	GACNNNNNNGTC	1 cut(s)	125
Acc36I	ACCTGC	2 cut(s)	1159, 1183
AccB7I	CCANNNNNTGG	1 cut(s)	1574
AccBSI	CCGCTC	1 cut(s)	400
AccI	GTMKAC	4 cut(s)	1095, 2110, 2316, 2796
AccII	CGCG	4 cut(s)	186, 898, 2484, 2847
AccIII	TCCGGA	1 cut(s)	597
AciI	CCGC	9 cut(s)	91, 132, 184, 400, 1532, 2233, 2268, 2845, 2847
AcoI	YGGCCR	3 cut(s)	88, 415, 2173
AcsI	RAATTY	6 cut(s)	144, 167, 1429, 1509, 1792, 2326
AcuI	CTGAAG	6 cut(s)	1419, 1745, 2363, 2574, 2633, 2754
AcvI	CACGTG	2 cut(s)	1181, 1748
AfiI	CCNNNNNNNGG	8 cut(s)	578, 929, 1030, 1402, 1574, 1813, 2818, 2944
AflIII	ACRYGT	2 cut(s)	896, 1105
AhlI	ACTAGT	1 cut(s)	2023
AjiI	CACGTC	1 cut(s)	1461
AjnI	CCWGG	3 cut(s)	1806, 2092, 2862
AjuI	GAANNNNNNNTTGG	4 cut(s)	1614, 1646, 2013, 2045
Alw21I	GWGCWC	4 cut(s)	64, 391, 1200, 1525
Alw26I	GTCTC	7 cut(s)	133, 194, 196, 248, 1096, 2149, 2886
Alw44I	GTGCAC	1 cut(s)	387
AlwNI	CAGNNNCTG	2 cut(s)	776, 2402
Ama87I	CYCGRG	2 cut(s)	300, 720
Aor13HI	TCCGGA	1 cut(s)	597
AoxI	GGCC	9 cut(s)	88, 415, 581, 1121, 1255, 1330, 1804, 1986, 2173
ApaI	GGGCCC	1 cut(s)	585
ApaLI	GTGCAC	1 cut(s)	387
ApeKI	GCWGC	7 cut(s)	530, 548, 746, 749, 890, 1156, 2486
ApoI	RAATTY	6 cut(s)	144, 167, 1429, 1509, 1792, 2326
Asp700I	GAANNNNTTC	1 cut(s)	1271
AspLEI	GCGC	3 cut(s)	553, 1156, 2486
AspS9I	GGNCC	6 cut(s)	581, 582, 1122, 1256, 1877, 1987
AsuHPI	GGTGA	6 cut(s)	1013, 1546, 1589, 2305, 2615, 2849
AsuII	TTCGAA	1 cut(s)	171
AsuNHI	GCTAGC	2 cut(s)	760, 1831
AvaI	CYCGRG	2 cut(s)	300, 720
AvaII	GGWCC	1 cut(s)	1877
BaeGI	GKGCMC	2 cut(s)	391, 585
BaeI	ACNNNNGTAYC	2 cut(s)	1179, 1212
BalI	TGGCCA	1 cut(s)	2175
BamHI	GGATCC	3 cut(s)	179, 514, 1454
BanII	GRGCYC	4 cut(s)	585, 1222, 1525, 2812
BarI	GAAGNNNNNNTAC	2 cut(s)	2361, 2393
BauI	CACGAG	2 cut(s)	1662, 1800
BbrPI	CACGTG	2 cut(s)	1181, 1748
BbsI	GAAGAC	1 cut(s)	1751
Bbv12I	GWGCWC	4 cut(s)	64, 391, 1200, 1525
BbvI	GCAGC	7 cut(s)	535, 542, 736, 758, 877, 1143, 2473
BcgI	CGANNNNNNTGC	2 cut(s)	2555, 2589
BciT130I	CCWGG	3 cut(s)	1808, 2094, 2864
BclI	TGATCA	1 cut(s)	1003
BcoDI	GTCTC	7 cut(s)	133, 194, 196, 248, 1096, 2149, 2886
BcuI	ACTAGT	1 cut(s)	2023
BfaI	CTAG	8 cut(s)	24, 761, 956, 1832, 2024, 2331, 2388, 2672
BfmI	CTRYAG	3 cut(s)	453, 1285, 2403
BfuAI	ACCTGC	2 cut(s)	1159, 1183
BisI	GCNGC	8 cut(s)	91, 531, 549, 747, 750, 891, 1157, 2487
BlpI	GCTNAGC	1 cut(s)	650
BlsI	GCNGC	8 cut(s)	92, 532, 550, 748, 751, 892, 1158, 2488
BmcAI	AGTACT	1 cut(s)	1847
Bme1390I	CCNGG	3 cut(s)	1808, 2094, 2864
Bme18I	GGWCC	1 cut(s)	1877
BmeT110I	CYCGRG	2 cut(s)	300, 720
BmgBI	CACGTC	1 cut(s)	1461
BmgT120I	GGNCC	6 cut(s)	581, 582, 1122, 1256, 1877, 1987
BmiI	GGNNCC	7 cut(s)	139, 181, 516, 583, 1219, 1258, 1456
BmrFI	CCNGG	3 cut(s)	1808, 2094, 2864
BmrI	ACTGGG	1 cut(s)	2355
BmsI	GCATC	7 cut(s)	548, 1029, 1492, 2190, 2266, 2279, 2753
BmtI	GCTAGC	2 cut(s)	764, 1835
BmuI	ACTGGG	1 cut(s)	2355
BpiI	GAAGAC	1 cut(s)	1751
BplI	GAGNNNNNCTC	4 cut(s)	638, 670, 748, 780
BpmI	CTGGAG	1 cut(s)	2562
Bpu10I	CCTNAGC	1 cut(s)	348
Bpu1102I	GCTNAGC	1 cut(s)	650
Bpu14I	TTCGAA	1 cut(s)	171
BpuEI	CTTGAG	3 cut(s)	640, 1036, 1826
Bsa29I	ATCGAT	1 cut(s)	8
BsaAI	YACGTR	3 cut(s)	369, 1181, 1748
BsaBI	GATNNNNATC	1 cut(s)	1563
BsaI	GGTCTC	3 cut(s)	133, 196, 248
BsaWI	WCCGGW	3 cut(s)	597, 2290, 2505
BsaXI	ACNNNNNCTCC	4 cut(s)	2331, 2361, 2925, 2955
Bsc4I	CCNNNNNNNGG	8 cut(s)	578, 929, 1030, 1402, 1574, 1813, 2818, 2944
Bse118I	RCCGGY	2 cut(s)	124, 417
Bse1I	ACTGG	5 cut(s)	208, 531, 2141, 2176, 2361
Bse3DI	GCAATG	3 cut(s)	1376, 2571, 2897
Bse8I	GATNNNNATC	1 cut(s)	1563
BseAI	TCCGGA	1 cut(s)	597
BseBI	CCWGG	3 cut(s)	1808, 2094, 2864
BseCI	ATCGAT	1 cut(s)	8
BseGI	GGATG	9 cut(s)	594, 649, 766, 1020, 1077, 1507, 1816, 1978, 2412
BseJI	GATNNNNATC	1 cut(s)	1563
BseLI	CCNNNNNNNGG	8 cut(s)	578, 929, 1030, 1402, 1574, 1813, 2818, 2944
BseMI	GCAATG	3 cut(s)	1376, 2571, 2897
BseMII	CTCAG	6 cut(s)	362, 744, 746, 1359, 1461, 2115
BseNI	ACTGG	5 cut(s)	208, 531, 2141, 2176, 2361
BseRI	GAGGAG	3 cut(s)	1341, 1815, 2570
BseSI	GKGCMC	2 cut(s)	391, 585
BseX3I	CGGCCG	1 cut(s)	88
BseXI	GCAGC	7 cut(s)	535, 542, 736, 758, 877, 1143, 2473
BseYI	CCCAGC	2 cut(s)	818, 1222
Bsh1236I	CGCG	4 cut(s)	186, 898, 2484, 2847
Bsh1285I	CGRYCG	2 cut(s)	91, 2796
BshFI	GGCC	9 cut(s)	90, 417, 583, 1123, 1257, 1332, 1806, 1988, 2175
BshVI	ATCGAT	1 cut(s)	8
BsiEI	CGRYCG	2 cut(s)	91, 2796
BsiHKAI	GWGCWC	4 cut(s)	64, 391, 1200, 1525
BsiHKCI	CYCGRG	2 cut(s)	300, 720
BsiSI	CCGG	6 cut(s)	87, 125, 418, 598, 2291, 2506
BslFI	GGGAC	2 cut(s)	317, 2921
BslI	CCNNNNNNNGG	8 cut(s)	578, 929, 1030, 1402, 1574, 1813, 2818, 2944
BsmAI	GTCTC	7 cut(s)	133, 194, 196, 248, 1096, 2149, 2886
BsmFI	GGGAC	2 cut(s)	317, 2921
BsnI	GGCC	9 cut(s)	90, 417, 583, 1123, 1257, 1332, 1806, 1988, 2175
Bso31I	GGTCTC	3 cut(s)	133, 196, 248
BsoBI	CYCGRG	2 cut(s)	300, 720
Bsp119I	TTCGAA	1 cut(s)	171
Bsp120I	GGGCCC	1 cut(s)	581
Bsp1286I	GDGCHC	7 cut(s)	64, 391, 585, 1200, 1222, 1525, 2812
Bsp13I	TCCGGA	1 cut(s)	597
Bsp1407I	TGTACA	4 cut(s)	1304, 2040, 2853, 2912
Bsp1720I	GCTNAGC	1 cut(s)	650
Bsp19I	CCATGG	1 cut(s)	572
BspACI	CCGC	9 cut(s)	91, 132, 184, 400, 1532, 2233, 2268, 2845, 2847
BspANI	GGCC	9 cut(s)	90, 417, 583, 1123, 1257, 1332, 1806, 1988, 2175
BspCNI	CTCAG	6 cut(s)	361, 743, 747, 1360, 1460, 2116
BspDI	ATCGAT	1 cut(s)	8
BspEI	TCCGGA	1 cut(s)	597
BspFNI	CGCG	4 cut(s)	186, 898, 2484, 2847
BspLI	GGNNCC	7 cut(s)	139, 181, 516, 583, 1219, 1258, 1456
BspMAI	CTGCAG	1 cut(s)	2407
BspMI	ACCTGC	2 cut(s)	1159, 1183
BspOI	GCTAGC	2 cut(s)	764, 1835
BspT104I	TTCGAA	1 cut(s)	171
BspTNI	GGTCTC	3 cut(s)	133, 196, 248
BsrBI	CCGCTC	1 cut(s)	400
BsrDI	GCAATG	3 cut(s)	1376, 2571, 2897
BsrFI	RCCGGY	2 cut(s)	124, 417
BsrGI	TGTACA	4 cut(s)	1304, 2040, 2853, 2912
BsrI	ACTGG	5 cut(s)	208, 531, 2141, 2176, 2361
BssAI	RCCGGY	2 cut(s)	124, 417
BssSI	CACGAG	2 cut(s)	1662, 1800
BssT1I	CCWWGG	4 cut(s)	94, 572, 2148, 2812
Bst2BI	CACGAG	2 cut(s)	1662, 1800
Bst2UI	CCWGG	3 cut(s)	1808, 2094, 2864
Bst6I	CTCTTC	8 cut(s)	42, 373, 990, 1262, 1395, 2547, 2730, 2955
BstAPI	GCANNNNNTGC	5 cut(s)	59, 81, 536, 1382, 2276
BstAUI	TGTACA	4 cut(s)	1304, 2040, 2853, 2912
BstBAI	YACGTR	3 cut(s)	369, 1181, 1748
BstBI	TTCGAA	1 cut(s)	171
BstDSI	CCRYGG	4 cut(s)	572, 2212, 2790, 2845
BstENI	CCTNNNNNAGG	1 cut(s)	1028
BstF5I	GGATG	9 cut(s)	594, 649, 766, 1020, 1077, 1507, 1816, 1978, 2412
BstFNI	CGCG	4 cut(s)	186, 898, 2484, 2847
BstHHI	GCGC	3 cut(s)	553, 1156, 2486
BstMAI	GTCTC	7 cut(s)	133, 194, 196, 248, 1096, 2149, 2886
BstMCI	CGRYCG	2 cut(s)	91, 2796
BstNI	CCWGG	3 cut(s)	1808, 2094, 2864
BstNSI	RCATGY	2 cut(s)	1109, 2359
BstSCI	CCNGG	3 cut(s)	1806, 2092, 2862
BstSFI	CTRYAG	3 cut(s)	453, 1285, 2403
BstSLI	GKGCMC	2 cut(s)	391, 585
BstSNI	TACGTA	1 cut(s)	369
BstUI	CGCG	4 cut(s)	186, 898, 2484, 2847
BstV1I	GCAGC	7 cut(s)	535, 542, 736, 758, 877, 1143, 2473
BstV2I	GAAGAC	1 cut(s)	1751
BstX2I	RGATCY	5 cut(s)	179, 514, 1454, 1564, 2287
BstXI	CCANNNNNNTGG	2 cut(s)	148, 1465
BstYI	RGATCY	5 cut(s)	179, 514, 1454, 1564, 2287
BstZI	CGGCCG	1 cut(s)	88
Bsu15I	ATCGAT	1 cut(s)	8
BsuRI	GGCC	9 cut(s)	90, 417, 583, 1123, 1257, 1332, 1806, 1988, 2175
BsuTUI	ATCGAT	1 cut(s)	8
BtgI	CCRYGG	4 cut(s)	572, 2212, 2790, 2845
BtrI	CACGTC	1 cut(s)	1461
BtsCI	GGATG	9 cut(s)	594, 649, 766, 1020, 1077, 1507, 1816, 1978, 2412
BtsI	GCAGTG	1 cut(s)	2658
BtsIMutI	CAGTG	6 cut(s)	318, 1050, 2058, 2183, 2240, 2658
BveI	ACCTGC	2 cut(s)	1159, 1183
CaiI	CAGNNNCTG	2 cut(s)	776, 2402
CfoI	GCGC	3 cut(s)	553, 1156, 2486
Cfr10I	RCCGGY	2 cut(s)	124, 417
Cfr13I	GGNCC	6 cut(s)	581, 582, 1122, 1256, 1877, 1987
Cfr42I	CCGCGG	1 cut(s)	2848
ClaI	ATCGAT	1 cut(s)	8
CseI	GACGC	1 cut(s)	2490
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	3 cut(s)	88, 415, 2173
EagI	CGGCCG	1 cut(s)	88
Eam1104I	CTCTTC	8 cut(s)	42, 373, 990, 1262, 1395, 2547, 2730, 2955
EarI	CTCTTC	8 cut(s)	42, 373, 990, 1262, 1395, 2547, 2730, 2955
Ecl136II	GAGCTC	1 cut(s)	1523
EclXI	CGGCCG	1 cut(s)	88
Eco105I	TACGTA	1 cut(s)	369
Eco130I	CCWWGG	4 cut(s)	94, 572, 2148, 2812
Eco147I	AGGCCT	1 cut(s)	1332
Eco24I	GRGCYC	4 cut(s)	585, 1222, 1525, 2812
Eco31I	GGTCTC	3 cut(s)	133, 196, 248
Eco32I	GATATC	1 cut(s)	1077
Eco47I	GGWCC	1 cut(s)	1877
Eco52I	CGGCCG	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	1523
Eco57I	CTGAAG	6 cut(s)	1419, 1745, 2363, 2574, 2633, 2754
Eco72I	CACGTG	2 cut(s)	1181, 1748
Eco88I	CYCGRG	2 cut(s)	300, 720
EcoICRI	GAGCTC	1 cut(s)	1523
EcoNI	CCTNNNNNAGG	1 cut(s)	1028
EcoO109I	RGGNCCY	1 cut(s)	581
EcoRI	GAATTC	2 cut(s)	167, 1509
EcoRII	CCWGG	3 cut(s)	1806, 2092, 2862
EcoRV	GATATC	1 cut(s)	1077
EcoT14I	CCWWGG	4 cut(s)	94, 572, 2148, 2812
EcoT22I	ATGCAT	1 cut(s)	541
EcoT38I	GRGCYC	4 cut(s)	585, 1222, 1525, 2812
ErhI	CCWWGG	4 cut(s)	94, 572, 2148, 2812
FalI	AAGNNNNNCTT	6 cut(s)	1365, 1397, 1614, 1646, 1743, 1775
FaqI	GGGAC	2 cut(s)	317, 2921
FauI	CCCGC	5 cut(s)	191, 393, 1525, 2240, 2275
FauNDI	CATATG	2 cut(s)	928, 2118
FbaI	TGATCA	1 cut(s)	1003
FblI	GTMKAC	4 cut(s)	1095, 2110, 2316, 2796
Fnu4HI	GCNGC	8 cut(s)	91, 531, 549, 747, 750, 891, 1157, 2487
FokI	GGATG	9 cut(s)	581, 656, 753, 1007, 1084, 1514, 1823, 1985, 2399
FriOI	GRGCYC	4 cut(s)	585, 1222, 1525, 2812
Fsp4HI	GCNGC	8 cut(s)	91, 531, 549, 747, 750, 891, 1157, 2487
FspBI	CTAG	8 cut(s)	24, 761, 956, 1832, 2024, 2331, 2388, 2672
GlaI	GCGC	3 cut(s)	552, 1155, 2485
GluI	GCNGC	8 cut(s)	91, 531, 549, 747, 750, 891, 1157, 2487
GsaI	CCCAGC	2 cut(s)	822, 1226
GsuI	CTGGAG	1 cut(s)	2562
HaeIII	GGCC	9 cut(s)	90, 417, 583, 1123, 1257, 1332, 1806, 1988, 2175
HapII	CCGG	6 cut(s)	87, 125, 418, 598, 2291, 2506
HgaI	GACGC	1 cut(s)	2490
HhaI	GCGC	3 cut(s)	553, 1156, 2486
Hin6I	GCGC	3 cut(s)	551, 1154, 2484
HinP1I	GCGC	3 cut(s)	551, 1154, 2484
HincII	GTYRAC	6 cut(s)	325, 1096, 2002, 2310, 2797, 2956
HindII	GTYRAC	6 cut(s)	325, 1096, 2002, 2310, 2797, 2956
HindIII	AAGCTT	2 cut(s)	1012, 1237
HpaII	CCGG	6 cut(s)	87, 125, 418, 598, 2291, 2506
HphI	GGTGA	6 cut(s)	1013, 1546, 1589, 2305, 2615, 2849
Hpy99I	CGWCG	2 cut(s)	1100, 1465
HpyAV	CCTTC	7 cut(s)	600, 826, 933, 1034, 1048, 2542, 2701
HpyCH4IV	ACGT	5 cut(s)	368, 943, 1180, 1460, 1747
HpySE526I	ACGT	5 cut(s)	368, 943, 1180, 1460, 1747
HspAI	GCGC	3 cut(s)	551, 1154, 2484
Kpn2I	TCCGGA	1 cut(s)	597
KroI	GCCGGC	1 cut(s)	417
KroNI	GCCGGC	1 cut(s)	419
Ksp22I	TGATCA	1 cut(s)	1003
KspI	CCGCGG	1 cut(s)	2848
LmnI	GCTCC	6 cut(s)	89, 109, 397, 403, 1217, 2581
Lsp1109I	GCAGC	7 cut(s)	535, 542, 736, 758, 877, 1143, 2473
LweI	GCATC	7 cut(s)	548, 1029, 1492, 2190, 2266, 2279, 2753
MaeI	CTAG	8 cut(s)	24, 761, 956, 1832, 2024, 2331, 2388, 2672
MaeII	ACGT	5 cut(s)	368, 943, 1180, 1460, 1747
MaeIII	GTNAC	6 cut(s)	274, 1207, 1600, 1672, 2216, 2368
MbiI	CCGCTC	1 cut(s)	400
MflI	RGATCY	5 cut(s)	179, 514, 1454, 1564, 2287
MhlI	GDGCHC	7 cut(s)	64, 391, 585, 1200, 1222, 1525, 2812
MlsI	TGGCCA	1 cut(s)	2175
MluI	ACGCGT	1 cut(s)	896
MluNI	TGGCCA	1 cut(s)	2175
MlyI	GAGTC	7 cut(s)	113, 287, 600, 1101, 1850, 2312, 2943
MmeI	TCCRAC	5 cut(s)	157, 659, 1297, 1695, 2317
Mox20I	TGGCCA	1 cut(s)	2175
Mph1103I	ATGCAT	1 cut(s)	541
MroI	TCCGGA	1 cut(s)	597
MroNI	GCCGGC	1 cut(s)	417
MroXI	GAANNNNTTC	1 cut(s)	1271
MscI	TGGCCA	1 cut(s)	2175
MseI	TTAA	5 cut(s)	159, 1335, 1949, 2223, 2922
MslI	CAYNNNNRTG	3 cut(s)	1110, 1463, 2189
Msp20I	TGGCCA	1 cut(s)	2175
MspA1I	CMGCKG	6 cut(s)	548, 749, 1687, 1703, 2594, 2847
MspI	CCGG	6 cut(s)	87, 125, 418, 598, 2291, 2506
MspR9I	CCNGG	3 cut(s)	1808, 2094, 2864
MvaI	CCWGG	3 cut(s)	1808, 2094, 2864
MvnI	CGCG	4 cut(s)	186, 898, 2484, 2847
NaeI	GCCGGC	1 cut(s)	419
NcoI	CCATGG	1 cut(s)	572
NdeI	CATATG	2 cut(s)	928, 2118
NgoMIV	GCCGGC	1 cut(s)	417
NheI	GCTAGC	2 cut(s)	760, 1831
NlaIV	GGNNCC	7 cut(s)	139, 181, 516, 583, 1219, 1258, 1456
NmeAIII	GCCGAG	2 cut(s)	222, 1807
NmuCI	GTSAC	1 cut(s)	1672
NsiI	ATGCAT	1 cut(s)	541
NspI	RCATGY	2 cut(s)	1109, 2359
NspV	TTCGAA	1 cut(s)	171
PaeI	GCATGC	1 cut(s)	2359
PaqCI	CACCTGC	1 cut(s)	1183
PceI	AGGCCT	1 cut(s)	1332
PciI	ACATGT	1 cut(s)	1105
PcsI	WCGNNNNNNNCGW	3 cut(s)	183, 249, 1753
PdiI	GCCGGC	1 cut(s)	419
PdmI	GAANNNNTTC	1 cut(s)	1271
PflMI	CCANNNNNTGG	1 cut(s)	1574
PkrI	GCNGC	8 cut(s)	92, 532, 550, 748, 751, 892, 1158, 2488
PleI	GAGTC	7 cut(s)	113, 287, 599, 1100, 1850, 2311, 2942
PmaCI	CACGTG	2 cut(s)	1181, 1748
PmlI	CACGTG	2 cut(s)	1181, 1748
PpsI	GAGTC	7 cut(s)	113, 287, 599, 1100, 1850, 2311, 2942
Ppu21I	YACGTR	3 cut(s)	369, 1181, 1748
PscI	ACATGT	1 cut(s)	1105
Psp124BI	GAGCTC	1 cut(s)	1525
Psp6I	CCWGG	3 cut(s)	1806, 2092, 2862
PspCI	CACGTG	2 cut(s)	1181, 1748
PspFI	CCCAGC	2 cut(s)	818, 1222
PspGI	CCWGG	3 cut(s)	1806, 2092, 2862
PspN4I	GGNNCC	7 cut(s)	139, 181, 516, 583, 1219, 1258, 1456
PspOMI	GGGCCC	1 cut(s)	581
PspPI	GGNCC	6 cut(s)	581, 582, 1122, 1256, 1877, 1987
PstI	CTGCAG	1 cut(s)	2407
PstNI	CAGNNNCTG	2 cut(s)	776, 2402
PsuI	RGATCY	5 cut(s)	179, 514, 1454, 1564, 2287
PvuII	CAGCTG	5 cut(s)	548, 749, 1687, 1703, 2594
RseI	CAYNNNNRTG	3 cut(s)	1110, 1463, 2189
SacI	GAGCTC	1 cut(s)	1525
SacII	CCGCGG	1 cut(s)	2848
SalI	GTCGAC	2 cut(s)	1094, 2795
SaqAI	TTAA	5 cut(s)	159, 1335, 1949, 2223, 2922
SatI	GCNGC	8 cut(s)	91, 531, 549, 747, 750, 891, 1157, 2487
Sau96I	GGNCC	6 cut(s)	581, 582, 1122, 1256, 1877, 1987
ScaI	AGTACT	1 cut(s)	1847
SchI	GAGTC	7 cut(s)	113, 287, 600, 1101, 1850, 2312, 2943
ScrFI	CCNGG	3 cut(s)	1808, 2094, 2864
SduI	GDGCHC	7 cut(s)	64, 391, 585, 1200, 1222, 1525, 2812
SfaNI	GCATC	7 cut(s)	548, 1029, 1492, 2190, 2266, 2279, 2753
SfcI	CTRYAG	3 cut(s)	453, 1285, 2403
Sfr303I	CCGCGG	1 cut(s)	2848
SfuI	TTCGAA	1 cut(s)	171
SgrBI	CCGCGG	1 cut(s)	2848
SinI	GGWCC	1 cut(s)	1877
SmiMI	CAYNNNNRTG	3 cut(s)	1110, 1463, 2189
SmlI	CTYRAG	3 cut(s)	655, 1015, 1841
SmoI	CTYRAG	3 cut(s)	655, 1015, 1841
SnaBI	TACGTA	1 cut(s)	369
SpeI	ACTAGT	1 cut(s)	2023
SphI	GCATGC	1 cut(s)	2359
SseBI	AGGCCT	1 cut(s)	1332
SsiI	CCGC	9 cut(s)	91, 132, 184, 400, 1532, 2233, 2268, 2845, 2847
SspMI	CTAG	8 cut(s)	24, 761, 956, 1832, 2024, 2331, 2388, 2672
SstI	GAGCTC	1 cut(s)	1525
StuI	AGGCCT	1 cut(s)	1332
StyD4I	CCNGG	3 cut(s)	1806, 2092, 2862
StyI	CCWWGG	4 cut(s)	94, 572, 2148, 2812
TaiI	ACGT	5 cut(s)	371, 946, 1183, 1463, 1750
TaqI	TCGA	9 cut(s)	8, 19, 171, 1090, 1095, 1463, 2565, 2796, 2806
TaqII	GACCGA	1 cut(s)	305
TatI	WGTACW	8 cut(s)	837, 1202, 1304, 1845, 1888, 2040, 2853, 2912
TauI	GCSGC	1 cut(s)	93
Tru1I	TTAA	5 cut(s)	159, 1335, 1949, 2223, 2922
Tru9I	TTAA	5 cut(s)	159, 1335, 1949, 2223, 2922
TscAI	CASTG	6 cut(s)	325, 1050, 2058, 2183, 2247, 2665
TseFI	GTSAC	1 cut(s)	1672
TseI	GCWGC	7 cut(s)	530, 548, 746, 749, 890, 1156, 2486
Tsp45I	GTSAC	1 cut(s)	1672
TspDTI	ATGAA	9 cut(s)	483, 915, 1128, 1264, 1326, 1996, 2151, 2312, 2720
TspGWI	ACGGA	7 cut(s)	96, 898, 1052, 2201, 2405, 2626, 2792
TspRI	CASTG	6 cut(s)	325, 1050, 2058, 2183, 2247, 2665
Van91I	CCANNNNNTGG	1 cut(s)	1574
VneI	GTGCAC	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	1877
XagI	CCTNNNNNAGG	1 cut(s)	1028
XapI	RAATTY	6 cut(s)	144, 167, 1429, 1509, 1792, 2326
XbaI	TCTAGA	2 cut(s)	955, 2387
XceI	RCATGY	2 cut(s)	1109, 2359
XmiI	GTMKAC	4 cut(s)	1095, 2110, 2316, 2796
XmnI	GAANNNNTTC	1 cut(s)	1271
XspI	CTAG	8 cut(s)	24, 761, 956, 1832, 2024, 2331, 2388, 2672
ZrmI	AGTACT	1 cut(s)	1847
Zsp2I	ATGCAT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.