Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004785

Physical Location & Seq

Genomic Coordinates Forward (+)

25965070 .. 25972499

Gene Structure 7430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G288400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2889 bp

ATGGCGTCCATGGCTAACCGAGCCAATCCACTGCTCAACAATCTCCCTCACTTTCTCACATGGCGAGCCCTAGGGTTCCGAACAATTTGCAGCGGCCGCATGGGCTTCTCGTCTCAGTCGCAGCGGCAACTCGATCCTGAATCCCCCGTCGCCGGCACCAAGGTACTCGAGACTTTCAAAGAAGAATTTGAAATCGGAGATCGTTTAATTACACTTGAATCCGGAAAGATCGCTCGCTTCGCTAACGGGGCCGTCGTTTTAGGCATGGAAGAGACCAAAGTCTTATCCACCGTGGCCGCTGCCAAAGGCGATGCCGTTCGTGATTTTTTGCCCCTAACTGTTGATTATCAAGAGAAGCAATTCGCCCAAGGTGTTATTCCGAACACATTCATGCGAAGGGAGGGAGCGCCAAAAGAGCGTGAACTCTTGTGTGGTCGTATCATTGATCGACCAATACGTCCCCTATTTCCTGCTGGGTTTTACCATGAGGTTCAGGTAACAGCGAGTGTTCTTTCCTCTGATGGAAAACAAGATCCAGATGTACTGGCAGCTAATGCTACATCTGCTGCACTTATGTTATCAGATATTCCTTGGGCTGGCCCCATTGGAGTGATTCGTATAGGCAGGATTTCTGGGCAGTTTATTGTTAACCCAACTATGGATGAGCTTAGCTTAAGTGATCTCAACTTAGTGTATGCCTGTACGAGGGACAAAACCTTAATGATTGATGTGCAGGCTCGTGAGATCTCAGAAAAAGATCTAGAAGCTGGGTTAAGATTGGCTCATCCTGAGGCAGTTAAGTATATTGAACCTCAAATCAAACTGGCTGCTAAAGCTGGTAAGCACAAGAAGGAATATAAATTGTCAATGATGCCAGATAGAACATTGGAGAAAGTCGGTAAATTGGCAGAAGCTCCTATAGAAGCTGTTTTCACTGATCCTACATATGGCAAGTTTGAACGTGGAGAGGCCCTAGAGAATATCACGCAAGATGTGAAAAAAGTACTTGAAGAAGAGTGTGATGAAGAAAGCTTGAGACTTTTACCAAAGGCAGTAGACACAGTGAGGAAAAAGGTTGTCCGTAGAAGAATTATTGCGGAAGGATTCAGACTTGATGGGAGGCGTCTTGATGAAGTTAGGCCTTTGTATTGCGAAGCTGGTAATTTGCCTATGCTGCATGGATCATCGCTTTTTAATCGTGGAGACACACAGGTTCTTTGTACCGTAACACTTGGGGCACCTGGTGATGCTCAACGGTTGGAGTCTATTGTTGGTCCCCCAACAAAACGCTTCATGCTTCACTACAGCTTCCCCCCATTCTGTATAAATGAAGTTGGTAAACGAGGTGGCTTGAACAGGCGTGAAGTTGGTCACGGAACTCTGGCGGAGAAAGCTCTCCTTGCTGTATTACCTCCTGAAGATGATTTTCCTTATACTGTCCGTATCAATTCTGAAGTAATGGCGTCTGATGGTTCAACATCAATGGCAACTGTCTGTGGAGGCAGTATGGCTTTGATGGATGCTGGCATTCCACTGCGCGAACATGTAGCTGGTGTCTCGGTAGGTCTTGTTAGTGAAGTTGATCAATCTACTGGCTCAATAAAGGATTACCGTATATTGACTGATATTCTGGGTCTGGAAGATCATTTGGGGGACATGGACTTTAAAATTGCTGGCACGCAAAGAGGAATTACAGCAATTCAGTTGGATATAAAACCTGCTGGAATTCCTTTAGATATTATTTGTGAAAGCTTAGAGCCTGCACGTAAAGGTCGCATTCAAATACTTGATCACATGGAGAGAGAGATCAGCGTACCACGCACTCAAGATGATAGAAATTCTCCTCGATTAGCTACCTTGAAGTACAGTAATGATGCACTTCGTCGCTTGCTTGGCCCTCTTGGTGCTCTAAAAAGAAAAATTGAAGATGAAACAGGTGCACGGATCTCCGTAAGTGATGGAACACTCACCATAGTTGCTAAGAATCAATCTGTAATGGAAAAAGTACTGGAAAAGGTTGATTTCATACTTGGGCGTGAGATCGAAATTGGTGGGATCTATAAAGGAAGAGTATCTTCAATCAAGGAATATGGTGCATTTGTGGAGTTTAATGGTGGTCAGCAAGGCCTTCTGCACATTTCTGAGTTGTCACATGAACCAGTTTCTCGGGTTTCAGACGTGGTATCTATTGGGCAGCAGCTTTCCTTGATATGCATAGGCCAGGATGTTCGCGGTAACATTAAATTATCCCTTAAAGCTACTTTACCTCGACCTAGATCTGAGACAAATAATGTGGTTGAGGAATCTGTTTCATCCACCAAAGAAGCACCTAGTATTTGGGCATCTGCTGGAGACCTTTCGTCTAATGGACAACAAAATCAGAGCTCTATATCTGAAGCTGTAGGCATTAATGCCTCTACTTCTAGTCCACCAATTCTAATTCGAAGTGCAGCAGAGTGTGATGAGGAAGAAAAATCTGCTGCTTTGGTTCAGAGTTCTAAAGCTACTTCTAGGCCTGTTTGTGCTTCGGAAACAGATCACAAGCGAATAACATTCCATCAAGATAGTTCAGTACTTGCTAAGCCTGGTCTCCTTCAAAGTATTAATGATAAGATGTCAAAATCTTTCTCACAGAAGGAAGGAGATAAAACTGAAGTTAGAAGCCCTGTAACTGCAAAAACTCTGAAGATAGGAACAAAGGTTACTGCCAAGGTTTATCAGATCCGCACGGGGGGATTGGTGCTTGACCTAGGTGGGGGAATTCGAGGAATGTATCGGTTTGAGACCAATGGTAAGAATGACTTCGAAGTCGATGATGAGTTACGAGTTGTGTGTGTTAGTTTTTCTAGCAAGGGGATTCCAGTAATGTCCCTGGAGGATGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000957 GO:0000959 GO:0000963 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0004654 GO:0006139 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140053 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko03018 map00230 map00240 map03018

Pfam Domains

Protein Families

KH_1 PNPase RNase_PH RNase_PH_C S1

Protein Analysis

963

Amino Acids

105.04

Weight (kDa)

5.96

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14580
fragaria_vesca	FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050
malus_domestica	MD17G1031200.v1.1
prunus_persica	Prupe.3G288400_v2.0.a1
pyrus_communis	pycom17g02860
rosa_chinensis	RchiOBHm_Chr2g0172601
rosa_laevigata	RLG00000016016 RLG00000022119
rosa_multiflora	Rmu_sc0000912.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079710
rosa_rugosa	Rorug01G0489200 Rorug02G0560200
rosa_samantha	Rh2AG636600 Rh2BG650000 Rh2CG616700 Rh2DG044700 Rh2DG664200
rosa_wichuraiana	Rw2G003770 Rw2G052650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	456, 2807
Acc36I	ACCTGC	1 cut(s)	1726
AccB1I	GGYRCC	2 cut(s)	155, 1237
AccI	GTMKAC	1 cut(s)	1056
AccII	CGCG	2 cut(s)	1539, 2232
AccIII	TCCGGA	1 cut(s)	221
AciI	CCGC	8 cut(s)	93, 97, 124, 297, 1097, 1385, 2232, 2725
AclWI	GGATC	7 cut(s)	128, 527, 932, 1189, 1952, 2063, 2716
AcoI	YGGCCR	2 cut(s)	94, 294
AcsI	RAATTY	4 cut(s)	185, 1725, 1837, 2760
AcuI	CTGAAG	5 cut(s)	1437, 1473, 2415, 2673, 2705
AcyI	GRCGYC	3 cut(s)	5, 1123, 1463
AdeI	CACNNNGTG	1 cut(s)	1244
AfaI	GTAC	9 cut(s)	165, 543, 703, 1005, 1222, 1815, 1865, 2007, 2574
AfiI	CCNNNNNNNGG	7 cut(s)	152, 596, 658, 705, 947, 2731, 2755
AflII	CTTAAG	1 cut(s)	673
AflIII	ACRYGT	1 cut(s)	1543
AhdI	GACNNNNNGTC	1 cut(s)	2359
AjiI	CACGTC	1 cut(s)	2179
AjnI	CCWGG	4 cut(s)	1240, 2220, 2584, 2871
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
Alw21I	GWGCWC	3 cut(s)	1909, 1942, 2387
Alw44I	GTGCAC	1 cut(s)	1938
AlwI	GGATC	7 cut(s)	128, 527, 932, 1189, 1952, 2063, 2716
Ama87I	CYCGRG	2 cut(s)	167, 2166
Aor13HI	TCCGGA	1 cut(s)	221
ApaLI	GTGCAC	1 cut(s)	1938
ApoI	RAATTY	4 cut(s)	185, 1725, 1837, 2760
AseI	ATTAAT	2 cut(s)	2409, 2604
Asp700I	GAANNNNTTC	3 cut(s)	359, 386, 2801
AspA2I	CCTAGG	2 cut(s)	70, 2749
AspLEI	GCGC	2 cut(s)	409, 1539
AspS9I	GGNCC	5 cut(s)	249, 599, 970, 1274, 1895
AsuHPI	GGTGA	2 cut(s)	1256, 1960
AsuII	TTCGAA	2 cut(s)	2443, 2805
AvaI	CYCGRG	2 cut(s)	167, 2166
AvaII	GGWCC	1 cut(s)	1274
AvrII	CCTAGG	2 cut(s)	70, 2749
AxyI	CCTNAGG	1 cut(s)	789
BaeGI	GKGCMC	2 cut(s)	1240, 1942
BanI	GGYRCC	2 cut(s)	155, 1237
BanII	GRGCYC	2 cut(s)	70, 2387
BauI	CACGAG	1 cut(s)	738
Bbv12I	GWGCWC	3 cut(s)	1909, 1942, 2387
BccI	CCATC	6 cut(s)	515, 1109, 1463, 1510, 1952, 2565
BceAI	ACGGC	2 cut(s)	236, 299
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciT130I	CCWGG	4 cut(s)	1242, 2222, 2586, 2873
BclI	TGATCA	2 cut(s)	1582, 1789
BfaI	CTAG	9 cut(s)	71, 761, 974, 2274, 2331, 2424, 2511, 2750, 2847
BfmI	CTRYAG	3 cut(s)	918, 1303, 2400
BfoI	RGCGCY	1 cut(s)	410
BfrI	CTTAAG	1 cut(s)	673
BfuAI	ACCTGC	1 cut(s)	1726
BglI	GCCNNNNNGGC	1 cut(s)	102
BglII	AGATCT	3 cut(s)	744, 757, 2276
BlnI	CCTAGG	2 cut(s)	70, 2749
BlpI	GCTNAGC	2 cut(s)	668, 2580
BmcAI	AGTACT	3 cut(s)	1005, 2007, 2574
Bme1390I	CCNGG	4 cut(s)	1242, 2222, 2586, 2873
Bme18I	GGWCC	1 cut(s)	1274
BmeRI	GACNNNNNGTC	1 cut(s)	2359
BmeT110I	CYCGRG	2 cut(s)	167, 2166
BmgBI	CACGTC	1 cut(s)	2179
BmgT120I	GGNCC	5 cut(s)	249, 599, 970, 1274, 1895
BmiI	GGNNCC	6 cut(s)	77, 157, 250, 601, 1239, 1276
BmrFI	CCNGG	4 cut(s)	1242, 2222, 2586, 2873
BmsI	GCATC	6 cut(s)	301, 861, 1237, 1510, 1864, 2351
BoxI	GACNNNNGTC	1 cut(s)	278
BpmI	CTGGAG	1 cut(s)	2370
Bpu1102I	GCTNAGC	2 cut(s)	668, 2580
Bpu14I	TTCGAA	2 cut(s)	2443, 2805
BpuEI	CTTGAG	2 cut(s)	1054, 1809
BsaAI	YACGTR	1 cut(s)	1766
BsaHI	GRCGYC	3 cut(s)	5, 1123, 1463
BsaI	GGTCTC	4 cut(s)	266, 2346, 2594, 2777
BsaJI	CCNNGG	9 cut(s)	9, 70, 159, 291, 367, 590, 2709, 2749, 2871
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	7 cut(s)	152, 596, 658, 705, 947, 2731, 2755
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	6 cut(s)	549, 828, 1597, 2013, 2159, 2861
Bse21I	CCTNAGG	1 cut(s)	789
BseAI	TCCGGA	1 cut(s)	221
BseBI	CCWGG	4 cut(s)	1242, 2222, 2586, 2873
BseDI	CCNNGG	9 cut(s)	9, 70, 159, 291, 367, 590, 2709, 2749, 2871
BseGI	GGATG	6 cut(s)	667, 784, 1525, 2230, 2312, 2884
BseLI	CCNNNNNNNGG	7 cut(s)	152, 596, 658, 705, 947, 2731, 2755
BseMII	CTCAG	5 cut(s)	128, 762, 780, 2133, 2271
BseNI	ACTGG	6 cut(s)	549, 828, 1597, 2013, 2159, 2861
BseRI	GAGGAG	1 cut(s)	1833
BseSI	GKGCMC	2 cut(s)	1240, 1942
BseX3I	CGGCCG	1 cut(s)	94
BseYI	CCCAGC	2 cut(s)	473, 767
BsgI	GTGCAG	5 cut(s)	552, 752, 1746, 2117, 2469
Bsh1236I	CGCG	2 cut(s)	1539, 2232
Bsh1285I	CGRYCG	1 cut(s)	97
BshNI	GGYRCC	2 cut(s)	155, 1237
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	3 cut(s)	1909, 1942, 2387
BsiHKCI	CYCGRG	2 cut(s)	167, 2166
BsiSI	CCGG	2 cut(s)	153, 222
BslFI	GGGAC	5 cut(s)	444, 722, 1260, 1667, 2854
BslI	CCNNNNNNNGG	7 cut(s)	152, 596, 658, 705, 947, 2731, 2755
BsmBI	CGTCTC	1 cut(s)	117
BsmFI	GGGAC	5 cut(s)	444, 722, 1260, 1667, 2854
BsmI	GAATGC	2 cut(s)	1527, 1776
Bso31I	GGTCTC	4 cut(s)	266, 2346, 2594, 2777
BsoBI	CYCGRG	2 cut(s)	167, 2166
Bsp119I	TTCGAA	2 cut(s)	2443, 2805
Bsp1286I	GDGCHC	5 cut(s)	70, 1240, 1909, 1942, 2387
Bsp13I	TCCGGA	1 cut(s)	221
Bsp1720I	GCTNAGC	2 cut(s)	668, 2580
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	8 cut(s)	93, 97, 124, 297, 1097, 1385, 2232, 2725
BspCNI	CTCAG	5 cut(s)	127, 761, 781, 2134, 2272
BspEI	TCCGGA	1 cut(s)	221
BspFNI	CGCG	2 cut(s)	1539, 2232
BspLI	GGNNCC	6 cut(s)	77, 157, 250, 601, 1239, 1276
BspMI	ACCTGC	1 cut(s)	1726
BspPI	GGATC	7 cut(s)	128, 527, 932, 1189, 1952, 2063, 2716
BspT104I	TTCGAA	2 cut(s)	2443, 2805
BspT107I	GGYRCC	2 cut(s)	155, 1237
BspTI	CTTAAG	1 cut(s)	673
BspTNI	GGTCTC	4 cut(s)	266, 2346, 2594, 2777
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	6 cut(s)	549, 828, 1597, 2013, 2159, 2861
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	9 cut(s)	9, 70, 159, 291, 367, 590, 2709, 2749, 2871
BssNI	GRCGYC	3 cut(s)	5, 1123, 1463
BssSI	CACGAG	1 cut(s)	738
BssT1I	CCWWGG	7 cut(s)	9, 70, 159, 367, 590, 2709, 2749
Bst2BI	CACGAG	1 cut(s)	738
Bst2UI	CCWGG	4 cut(s)	1242, 2222, 2586, 2873
Bst4CI	ACNGT	9 cut(s)	292, 340, 1063, 1225, 1257, 1438, 1492, 1613, 1868
Bst6I	CTCTTC	3 cut(s)	264, 1008, 2062
BstACI	GRCGYC	3 cut(s)	5, 1123, 1463
BstAFI	CTTAAG	1 cut(s)	673
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstBAI	YACGTR	1 cut(s)	1766
BstBI	TTCGAA	2 cut(s)	2443, 2805
BstDSI	CCRYGG	2 cut(s)	9, 291
BstENI	CCTNNNNNAGG	1 cut(s)	703
BstF5I	GGATG	6 cut(s)	667, 784, 1525, 2230, 2312, 2884
BstFNI	CGCG	2 cut(s)	1539, 2232
BstH2I	RGCGCY	1 cut(s)	410
BstHHI	GCGC	2 cut(s)	409, 1539
BstMCI	CGRYCG	1 cut(s)	97
BstNI	CCWGG	4 cut(s)	1242, 2222, 2586, 2873
BstNSI	RCATGY	1 cut(s)	1547
BstPAI	GACNNNNGTC	1 cut(s)	278
BstSCI	CCNGG	4 cut(s)	1240, 2220, 2584, 2871
BstSFI	CTRYAG	3 cut(s)	918, 1303, 2400
BstSLI	GKGCMC	2 cut(s)	1240, 1942
BstUI	CGCG	2 cut(s)	1539, 2232
BstX2I	RGATCY	7 cut(s)	532, 744, 757, 1944, 2055, 2276, 2721
BstYI	RGATCY	7 cut(s)	532, 744, 757, 1944, 2055, 2276, 2721
BstZI	CGGCCG	1 cut(s)	94
Bsu36I	CCTNAGG	1 cut(s)	789
BtgI	CCRYGG	2 cut(s)	9, 291
BtgZI	GCGATG	2 cut(s)	324, 1170
BtrI	CACGTC	1 cut(s)	2179
BtsCI	GGATG	6 cut(s)	667, 784, 1525, 2230, 2312, 2884
BtsI	GCAGTG	2 cut(s)	29, 1532
BtsIMutI	CAGTG	4 cut(s)	29, 933, 1068, 1532
BveI	ACCTGC	1 cut(s)	1726
CciNI	GCGGCCGC	1 cut(s)	94
CfoI	GCGC	2 cut(s)	409, 1539
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	5 cut(s)	249, 599, 970, 1274, 1895
CseI	GACGC	2 cut(s)	1112, 1452
CsiI	ACCWGGT	1 cut(s)	1240
Csp6I	GTAC	9 cut(s)	164, 542, 702, 1004, 1221, 1814, 1864, 2006, 2573
CspCI	CAANNNNNGTGG	2 cut(s)	2274, 2309
CviQI	GTAC	9 cut(s)	164, 542, 702, 1004, 1221, 1814, 1864, 2006, 2573
DraI	TTTAAA	1 cut(s)	1666
DraIII	CACNNNGTG	1 cut(s)	1244
DrdI	GACNNNNNNGTC	2 cut(s)	456, 2807
DriI	GACNNNNNGTC	1 cut(s)	2359
DseDI	GACNNNNNNGTC	2 cut(s)	456, 2807
EaeI	YGGCCR	2 cut(s)	94, 294
EagI	CGGCCG	1 cut(s)	94
Eam1104I	CTCTTC	3 cut(s)	264, 1008, 2062
Eam1105I	GACNNNNNGTC	1 cut(s)	2359
EarI	CTCTTC	3 cut(s)	264, 1008, 2062
EciI	GGCGGA	1 cut(s)	1400
Ecl136II	GAGCTC	1 cut(s)	2385
EclXI	CGGCCG	1 cut(s)	94
Eco130I	CCWWGG	7 cut(s)	9, 70, 159, 367, 590, 2709, 2749
Eco147I	AGGCCT	3 cut(s)	1141, 2127, 2515
Eco24I	GRGCYC	2 cut(s)	70, 2387
Eco31I	GGTCTC	4 cut(s)	266, 2346, 2594, 2777
Eco47I	GGWCC	1 cut(s)	1274
Eco52I	CGGCCG	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	2385
Eco57I	CTGAAG	5 cut(s)	1437, 1473, 2415, 2673, 2705
Eco81I	CCTNAGG	1 cut(s)	789
Eco88I	CYCGRG	2 cut(s)	167, 2166
EcoICRI	GAGCTC	1 cut(s)	2385
EcoNI	CCTNNNNNAGG	1 cut(s)	703
EcoO109I	RGGNCCY	1 cut(s)	970
EcoRI	GAATTC	2 cut(s)	1725, 2760
EcoRII	CCWGG	4 cut(s)	1240, 2220, 2584, 2871
EcoT14I	CCWWGG	7 cut(s)	9, 70, 159, 367, 590, 2709, 2749
EcoT22I	ATGCAT	1 cut(s)	2216
EcoT38I	GRGCYC	2 cut(s)	70, 2387
ErhI	CCWWGG	7 cut(s)	9, 70, 159, 367, 590, 2709, 2749
Esp3I	CGTCTC	1 cut(s)	117
FalI	AAGNNNNNCTT	6 cut(s)	1383, 1415, 2059, 2091, 2786, 2818
FaqI	GGGAC	5 cut(s)	444, 722, 1260, 1667, 2854
FauNDI	CATATG	1 cut(s)	946
FbaI	TGATCA	2 cut(s)	1582, 1789
FblI	GTMKAC	1 cut(s)	1056
FokI	GGATG	5 cut(s)	674, 771, 1532, 2237, 2299
FriOI	GRGCYC	2 cut(s)	70, 2387
FspBI	CTAG	9 cut(s)	71, 761, 974, 2274, 2331, 2424, 2511, 2750, 2847
GlaI	GCGC	2 cut(s)	408, 1538
GsaI	CCCAGC	2 cut(s)	477, 771
GsuI	CTGGAG	1 cut(s)	2370
HaeII	RGCGCY	1 cut(s)	410
HapII	CCGG	2 cut(s)	153, 222
HgaI	GACGC	2 cut(s)	1112, 1452
HhaI	GCGC	2 cut(s)	409, 1539
Hin1I	GRCGYC	3 cut(s)	5, 1123, 1463
Hin6I	GCGC	2 cut(s)	407, 1537
HinP1I	GCGC	2 cut(s)	407, 1537
HincII	GTYRAC	1 cut(s)	649
HindII	GTYRAC	1 cut(s)	649
HindIII	AAGCTT	2 cut(s)	1030, 1750
HinfI	GANTC	8 cut(s)	140, 218, 613, 1104, 1262, 1984, 2303, 2857
HpaI	GTTAAC	1 cut(s)	649
HpaII	CCGG	2 cut(s)	153, 222
HphI	GGTGA	2 cut(s)	1256, 1960
Hpy166II	GTNNAC	6 cut(s)	422, 649, 1057, 1340, 1940, 2429
Hpy8I	GTNNAC	6 cut(s)	422, 649, 1057, 1340, 1940, 2429
Hpy99I	CGWCG	3 cut(s)	152, 257, 1887
HpyAV	CCTTC	7 cut(s)	390, 844, 1094, 2138, 2603, 2629, 2633
HpyCH4III	ACNGT	9 cut(s)	292, 340, 1063, 1225, 1257, 1438, 1492, 1613, 1868
HpyCH4IV	ACGT	4 cut(s)	457, 961, 1765, 2178
HpySE526I	ACGT	4 cut(s)	457, 961, 1765, 2178
Hsp92I	GRCGYC	3 cut(s)	5, 1123, 1463
HspAI	GCGC	2 cut(s)	407, 1537
Kpn2I	TCCGGA	1 cut(s)	221
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Ksp22I	TGATCA	2 cut(s)	1582, 1789
KspAI	GTTAAC	1 cut(s)	649
LmnI	GCTCC	2 cut(s)	404, 919
LweI	GCATC	6 cut(s)	301, 861, 1237, 1510, 1864, 2351
MabI	ACCWGGT	1 cut(s)	1240
MaeI	CTAG	9 cut(s)	71, 761, 974, 2274, 2331, 2424, 2511, 2750, 2847
MaeII	ACGT	4 cut(s)	457, 961, 1765, 2178
MaeIII	GTNAC	8 cut(s)	496, 1225, 1370, 2148, 2234, 2668, 2701, 2820
MflI	RGATCY	7 cut(s)	532, 744, 757, 1944, 2055, 2276, 2721
MhlI	GDGCHC	5 cut(s)	70, 1240, 1909, 1942, 2387
MlyI	GAGTC	1 cut(s)	1271
MmeI	TCCRAC	2 cut(s)	1239, 1686
Mph1103I	ATGCAT	1 cut(s)	2216
MroI	TCCGGA	1 cut(s)	221
MroNI	GCCGGC	1 cut(s)	152
MroXI	GAANNNNTTC	3 cut(s)	359, 386, 2801
MslI	CAYNNNNRTG	2 cut(s)	389, 608
MspA1I	CMGCKG	3 cut(s)	93, 124, 299
MspCI	CTTAAG	1 cut(s)	673
MspI	CCGG	2 cut(s)	153, 222
MspR9I	CCNGG	4 cut(s)	1242, 2222, 2586, 2873
Mva1269I	GAATGC	2 cut(s)	1527, 1776
MvaI	CCWGG	4 cut(s)	1242, 2222, 2586, 2873
MvnI	CGCG	2 cut(s)	1539, 2232
NaeI	GCCGGC	1 cut(s)	154
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	946
NgoMIV	GCCGGC	1 cut(s)	152
NlaIV	GGNNCC	6 cut(s)	77, 157, 250, 601, 1239, 1276
NmuCI	GTSAC	2 cut(s)	1370, 2148
NotI	GCGGCCGC	1 cut(s)	94
NsiI	ATGCAT	1 cut(s)	2216
NspI	RCATGY	1 cut(s)	1547
NspV	TTCGAA	2 cut(s)	2443, 2805
PaeR7I	CTCGAG	1 cut(s)	167
PceI	AGGCCT	3 cut(s)	1141, 2127, 2515
PciI	ACATGT	1 cut(s)	1543
PcsI	WCGNNNNNNNCGW	2 cut(s)	252, 454
PctI	GAATGC	2 cut(s)	1527, 1776
PdiI	GCCGGC	1 cut(s)	154
PdmI	GAANNNNTTC	3 cut(s)	359, 386, 2801
PfeI	GAWTC	7 cut(s)	140, 218, 613, 1104, 1984, 2303, 2857
PleI	GAGTC	1 cut(s)	1270
PpsI	GAGTC	1 cut(s)	1270
Ppu21I	YACGTR	1 cut(s)	1766
PscI	ACATGT	1 cut(s)	1543
PshAI	GACNNNNGTC	1 cut(s)	278
PshBI	ATTAAT	2 cut(s)	2409, 2604
Psp124BI	GAGCTC	1 cut(s)	2387
Psp6I	CCWGG	4 cut(s)	1240, 2220, 2584, 2871
PspFI	CCCAGC	2 cut(s)	473, 767
PspGI	CCWGG	4 cut(s)	1240, 2220, 2584, 2871
PspN4I	GGNNCC	6 cut(s)	77, 157, 250, 601, 1239, 1276
PspPI	GGNCC	5 cut(s)	249, 599, 970, 1274, 1895
PsrI	GAACNNNNNNTAC	2 cut(s)	2686, 2718
PsuI	RGATCY	7 cut(s)	532, 744, 757, 1944, 2055, 2276, 2721
RsaI	GTAC	9 cut(s)	165, 543, 703, 1005, 1222, 1815, 1865, 2007, 2574
RsaNI	GTAC	9 cut(s)	164, 542, 702, 1004, 1221, 1814, 1864, 2006, 2573
RseI	CAYNNNNRTG	2 cut(s)	389, 608
SacI	GAGCTC	1 cut(s)	2387
Sau96I	GGNCC	5 cut(s)	249, 599, 970, 1274, 1895
ScaI	AGTACT	3 cut(s)	1005, 2007, 2574
SchI	GAGTC	1 cut(s)	1271
ScrFI	CCNGG	4 cut(s)	1242, 2222, 2586, 2873
SduI	GDGCHC	5 cut(s)	70, 1240, 1909, 1942, 2387
SexAI	ACCWGGT	1 cut(s)	1240
SfaNI	GCATC	6 cut(s)	301, 861, 1237, 1510, 1864, 2351
SfcI	CTRYAG	3 cut(s)	918, 1303, 2400
Sfr274I	CTCGAG	1 cut(s)	167
SfuI	TTCGAA	2 cut(s)	2443, 2805
SinI	GGWCC	1 cut(s)	1274
SlaI	CTCGAG	1 cut(s)	167
SmiMI	CAYNNNNRTG	2 cut(s)	389, 608
SmlI	CTYRAG	4 cut(s)	167, 673, 1033, 1824
SmoI	CTYRAG	4 cut(s)	167, 673, 1033, 1824
SseBI	AGGCCT	3 cut(s)	1141, 2127, 2515
SsiI	CCGC	8 cut(s)	93, 97, 124, 297, 1097, 1385, 2232, 2725
SspMI	CTAG	9 cut(s)	71, 761, 974, 2274, 2331, 2424, 2511, 2750, 2847
SstI	GAGCTC	1 cut(s)	2387
StuI	AGGCCT	3 cut(s)	1141, 2127, 2515
StyD4I	CCNGG	4 cut(s)	1240, 2220, 2584, 2871
StyI	CCWWGG	7 cut(s)	9, 70, 159, 367, 590, 2709, 2749
TaaI	ACNGT	9 cut(s)	292, 340, 1063, 1225, 1257, 1438, 1492, 1613, 1868
TaiI	ACGT	4 cut(s)	460, 964, 1768, 2181
TatI	WGTACW	5 cut(s)	541, 1003, 1863, 2005, 2572
TauI	GCSGC	4 cut(s)	96, 99, 127, 299
TfiI	GAWTC	7 cut(s)	140, 218, 613, 1104, 1984, 2303, 2857
TscAI	CASTG	4 cut(s)	36, 940, 1068, 1539
TseFI	GTSAC	2 cut(s)	1370, 2148
Tsp45I	GTSAC	2 cut(s)	1370, 2148
TspDTI	ATGAA	9 cut(s)	379, 1038, 1146, 1282, 1344, 1944, 2014, 2169, 2301
TspGWI	ACGGA	5 cut(s)	1070, 1389, 1430, 1939, 1957
TspRI	CASTG	4 cut(s)	36, 940, 1068, 1539
Vha464I	CTTAAG	1 cut(s)	673
VneI	GTGCAC	1 cut(s)	1938
VpaK11BI	GGWCC	1 cut(s)	1274
VspI	ATTAAT	2 cut(s)	2409, 2604
XagI	CCTNNNNNAGG	1 cut(s)	703
XapI	RAATTY	4 cut(s)	185, 1725, 1837, 2760
XbaI	TCTAGA	1 cut(s)	760
XceI	RCATGY	1 cut(s)	1547
XhoI	CTCGAG	1 cut(s)	167
XmaJI	CCTAGG	2 cut(s)	70, 2749
XmiI	GTMKAC	1 cut(s)	1056
XmnI	GAANNNNTTC	3 cut(s)	359, 386, 2801
XspI	CTAG	9 cut(s)	71, 761, 974, 2274, 2331, 2424, 2511, 2750, 2847
ZrmI	AGTACT	3 cut(s)	1005, 2007, 2574
Zsp2I	ATGCAT	1 cut(s)	2216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.