Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0004785

Physical Location & Seq

Genomic Coordinates Reverse (-)

3207228 .. 3217347

Gene Structure 10120 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016016

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2529 bp

ATGATTAGACCACCCCCACCCCCACCCCCACACCCACACCCACCACCACCACCCCCTCTTCGCACTAAATCTCTTAAACCTTCACTCTCTCGCTCATTTCCACAACCGCCCATGGCCTCCGTGGCCCACCGCGCCAACCTTACCTCTCTCTGTAATTACTCAGTTCTTCGGATTTTCTTTCATGAGGTTCAGGTGATGGCAAGTGTTCTTTCTTCTGATGGAAAGCAAGATCCAGATGTAATGGCAGCTGATGCTACGTCTGCTGCTCTTATGTTATCAGACATTCCGTGGGCAATTAGCCCCATTGGAATGATTTGCATTGGGAGGATCGAGGGGAAGTTTATTGTTAACCCAACTATGGATGAGCTTAGCTTAAGGGATCTCAACTTAGTGTATGCATGTACAAGGGACAAAACATTAATGGTTGATGTGCAAGCTCATGAGATTTCAGAAAGAGATCTAGAAGCTGGGATGAGATTGGCTCATTGTCTAGACCTGCAACTAGTATTATTTGAAGCAGTTAAATATCTTGAACCTCAAATCAGAAAGGAATATAAATTGTCACTGATGCCAGAGAGAACATTGGAGAGAAATATTGTGCAAGATGTCAGAAAGGCACGTGAAGAAGAGTGTGATGAAGAAAGCTTGAGACTGTTACCGAAAGCAGTAGACACAGTGAGGAAAAAGGTTGTCCGTAGAAGAATAATTGCGGAAGGATCAAGACTTGATGGTAGGCGACTGGATGAAGTTAGGCCTGTGTACTGTGAATCTGGTAATTTGCCTATGTTGCATGGATCATCACTTTTTTCTTGTGGAGACACGCAGGTACTCTGTACTGTAACAGTTGGGGCACCTGGTAATGCACAACGCTTGGAATCCGTGGTGGGCCTCCCATCAAAGCCCTTCATGCTTCACTACAGTTTTCCCCCATTCTGTATAAATGAGGTCGGTAGACATGATGGCTTGAACAGGCGTGAAGTTGGTCATGCTCTGCGTGCTGTGTTACCTCCTGAAGATGATTTTCCATACACTGTTCATGTCAATTCTGAAGTAATGGCTTCTGATGGTTCAACATCTATGGCTTCTGTCTGTGGAGGCAGTATGACTTTGATGGATGCTGGCATTCCACTGCGCAAACATGTAGCTGGTGTCTCCGTAGGTCTTGTTAGTGAAGTTGATCAATCAACTGGCACAATAAAGGAATACCGTATATTGACTGACATTCTGCTTGGAGGCTGCACTAAAGGTCCTATTCAAATTCTTGATCACATGGAGAGAGAGATCAGTGCACCACGCACTCAAGATGATAAAAATTCTCCTCGATTAGCTATCTTGAAGTACAGCAATGATGCACTTCGTCGCTTGCTTGGGCCTCTGGGTGCTCTTAAAAGAAAAATTGAAGACGAAACAGGTACACGGATCTCTGTAAGTGATGGAACACTCACCATAGTTGCTAAGAATCAATCTCCAATGGACAAAGTACACGGAAAGGTTGATTTTGTACTTGGGCATGACATTGAAATTGGCGGGATCTATAAAGGGACTGTAGCTTCAATAAAAAAGTATGGTGCATTCGTGGAGTTTAATGGTGGGCAACAAGGCCCAACCGTTCTTTTATATTATCAGGTGTTACGGATTTCAGATGTAGTATCTGTTGGCCAGCAGCTCTCTTTGATTTGCATAGGCCAGGATGTTCGTGGTAACATTAAGTTGACAAATAATTTGGCTGTGGAATCTGTTCCATCTATGAAACAAGCTCATAGTGTTTGGGCAGCTGCTGGAGATGTGTCTAATGGCGAAGAAACGCATAGCCCTTTGTCTGAGGAATTGCCAGTGAACAAATATGAAGTTATTGCGATAAAATCCTCTACTTCCTCTAGTCCACGTACCAGTTCTAGTCAGAATAATGATTTGAGTAATAAGGAAGACCCTGTAACTGCAAAAAGTCTGAATCTAGGAAAAAAGGTTACTGCCAAGGTTTATCAGATCTGCACAGGTGGTCTAGAGCTTGATTTGGGTGGGGGACTTCGAGGAATGTATCGGTTTGAGCCTGAGTCACTGGATCATGGTTCTCAAAATGAAAGTTCAGGAGCATCTTTGAATGCAGTGGGTTTCTTAGAAGATTCTGAAGTCACTACATTAGAAGTCTCATCTGGAGGACTGGGAAAGTCAACAGACATCCACAAAGTCAGGAACCAAGAAGGCCTCATCGTAAAGAGGAAGGATCTTGATCCTCCAGTAAGCCTACAACATGCAAAAAGGCACATGGAGCCCTGTGTAACTCATATCCAGCACTGTACTGAACAGTTATCTAGCACGTACCTAGTGCTGGCTAGCCTTCAGGCTGTCAGAAAAGGAGAAAACGGTGGAAGAACTCAATTTGAAGGTATTTCAGGTTGTACCTTACATATGCCGCTCAATAGAGCTGCCCGGGCATTAGTTTCAGGCTCAAATGTCATGGACTCTACGAAGTCTTCAGCTTTGAAAAGCCCTCCTGATCGAGACGGCATAACCACCACAGAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000957 GO:0000959 GO:0000963 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004540 GO:0004654 GO:0006139 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019439 GO:0034641 GO:0034655 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0046483 GO:0046700 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140053 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko03018 map00230 map00240 map03018

Pfam Domains

Protein Families

KH_1 PNPase RNase_PH RNase_PH_C S1

Protein Analysis

843

Amino Acids

91.67

Weight (kDa)

6.58

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH_C	PF03725	101 - 162	2e-08	3' exoribonuclease family, domain 2
PNPase	PF03726	197 - 246	1e-07	Polyribonucleotide nucleotidyltransferase, RNA binding domain
RNase_PH	PF01138	249 - 376	2.9e-22	3' exoribonuclease family, domain 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004785)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14580
fragaria_vesca	FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050 FvH4_6g51050
malus_domestica	MD17G1031200.v1.1
prunus_persica	Prupe.3G288400_v2.0.a1
pyrus_communis	pycom17g02860
rosa_chinensis	RchiOBHm_Chr2g0172601
rosa_laevigata	RLG00000016016 RLG00000022119
rosa_multiflora	Rmu_sc0000912.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079710
rosa_rugosa	Rorug01G0489200 Rorug02G0560200
rosa_samantha	Rh2AG636600 Rh2BG650000 Rh2CG616700 Rh2DG044700 Rh2DG664200
rosa_wichuraiana	Rw2G003770 Rw2G052650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1133
Acc36I	ACCTGC	2 cut(s)	504, 814
AccB1I	GGYRCC	1 cut(s)	850
AccBSI	CCGCTC	1 cut(s)	2416
AccI	GTMKAC	2 cut(s)	669, 952
AccII	CGCG	1 cut(s)	132
AciI	CCGC	5 cut(s)	107, 130, 710, 1527, 2414
AcoI	YGGCCR	1 cut(s)	1657
AcsI	RAATTY	2 cut(s)	1257, 1312
AcuI	CTGAAG	5 cut(s)	1032, 1068, 2148, 2324, 2460
AcvI	CACGTG	1 cut(s)	620
AfiI	CCNNNNNNNGG	2 cut(s)	358, 2329
AflII	CTTAAG	1 cut(s)	373
AflIII	ACRYGT	1 cut(s)	1138
AhlI	ACTAGT	1 cut(s)	502
AjnI	CCWGG	2 cut(s)	853, 1686
Alw21I	GWGCWC	2 cut(s)	1291, 1384
Alw26I	GTCTC	5 cut(s)	643, 810, 1156, 2152, 2496
Alw44I	GTGCAC	1 cut(s)	1287
AlwNI	CAGNNNCTG	1 cut(s)	1778
Ama87I	CYCGRG	1 cut(s)	2430
AoxI	GGCC	9 cut(s)	114, 123, 752, 886, 1370, 1600, 1657, 1684, 2203
ApaLI	GTGCAC	1 cut(s)	1287
ApeKI	GCWGC	7 cut(s)	245, 263, 1236, 1663, 1772, 1775, 2426
ApoI	RAATTY	2 cut(s)	1257, 1312
ArsI	GACNNNNNNTTYG	2 cut(s)	1705, 1737
AseI	ATTAAT	1 cut(s)	419
Asp700I	GAANNNNTTC	1 cut(s)	1737
AspLEI	GCGC	2 cut(s)	134, 1134
AspS9I	GGNCC	5 cut(s)	124, 886, 1247, 1370, 1601
AsuC2I	CCSGG	2 cut(s)	2431, 2432
AsuHPI	GGTGA	2 cut(s)	205, 1435
AsuNHI	GCTAGC	1 cut(s)	2333
AvaI	CYCGRG	1 cut(s)	2430
AvaII	GGWCC	1 cut(s)	1247
BaeGI	GKGCMC	2 cut(s)	853, 1291
BalI	TGGCCA	1 cut(s)	1659
BanI	GGYRCC	1 cut(s)	850
BanII	GRGCYC	1 cut(s)	2274
BbrPI	CACGTG	1 cut(s)	620
BbsI	GAAGAC	3 cut(s)	1407, 1932, 2466
Bbv12I	GWGCWC	2 cut(s)	1291, 1384
BbvI	GCAGC	7 cut(s)	250, 257, 1223, 1675, 1762, 1784, 2413
BccI	CCATC	9 cut(s)	190, 212, 722, 901, 953, 1058, 1105, 1427, 1750
BceAI	ACGGC	1 cut(s)	2521
BciT130I	CCWGG	2 cut(s)	855, 1688
BclI	TGATCA	2 cut(s)	1177, 1264
BcnI	CCSGG	2 cut(s)	2431, 2432
BcoDI	GTCTC	5 cut(s)	643, 810, 1156, 2152, 2496
BcuI	ACTAGT	1 cut(s)	502
BfmI	CTRYAG	2 cut(s)	916, 1545
BfrI	CTTAAG	1 cut(s)	373
BfuAI	ACCTGC	2 cut(s)	504, 814
BglI	GCCNNNNNGGC	1 cut(s)	122
BglII	AGATCT	2 cut(s)	457, 1986
BisI	GCNGC	8 cut(s)	246, 264, 1237, 1664, 1773, 1776, 2414, 2427
BlpI	GCTNAGC	1 cut(s)	368
BlsI	GCNGC	8 cut(s)	247, 265, 1238, 1665, 1774, 1777, 2415, 2428
Bme1390I	CCNGG	4 cut(s)	855, 1688, 2431, 2432
Bme18I	GGWCC	1 cut(s)	1247
BmeT110I	CYCGRG	1 cut(s)	2430
BmgT120I	GGNCC	5 cut(s)	124, 886, 1247, 1370, 1601
BmiI	GGNNCC	3 cut(s)	852, 2195, 2271
BmrFI	CCNGG	4 cut(s)	855, 1688, 2431, 2432
BmrI	ACTGGG	1 cut(s)	2171
BmsI	GCATC	5 cut(s)	241, 558, 1105, 1339, 2102
BmtI	GCTAGC	1 cut(s)	2337
BmuI	ACTGGG	1 cut(s)	2171
BpiI	GAAGAC	3 cut(s)	1407, 1932, 2466
BplI	GAGNNNNNCTC	2 cut(s)	466, 498
BpmI	CTGGAG	3 cut(s)	1800, 2175, 2220
Bpu1102I	GCTNAGC	1 cut(s)	368
BpuEI	CTTGAG	2 cut(s)	667, 1284
BpuMI	CCSGG	2 cut(s)	2431, 2432
BsaAI	YACGTR	3 cut(s)	620, 1886, 2319
BsaBI	GATNNNNATC	1 cut(s)	2229
BsaJI	CCNNGG	6 cut(s)	111, 120, 287, 879, 1974, 2430
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 2329
Bse1I	ACTGG	7 cut(s)	744, 1192, 1832, 1890, 2064, 2166, 2237
Bse3DI	GCAATG	1 cut(s)	1351
Bse8I	GATNNNNATC	1 cut(s)	2229
BseBI	CCWGG	2 cut(s)	855, 1688
BseDI	CCNNGG	6 cut(s)	111, 120, 287, 879, 1974, 2430
BseGI	GGATG	6 cut(s)	367, 477, 748, 1120, 1696, 2178
BseJI	GATNNNNATC	1 cut(s)	2229
BseLI	CCNNNNNNNGG	2 cut(s)	358, 2329
BseMI	GCAATG	1 cut(s)	1351
BseMII	CTCAG	3 cut(s)	174, 1812, 2043
BseNI	ACTGG	7 cut(s)	744, 1192, 1832, 1890, 2064, 2166, 2237
BseRI	GAGGAG	1 cut(s)	1308
BseSI	GKGCMC	2 cut(s)	853, 1291
BseXI	GCAGC	7 cut(s)	250, 257, 1223, 1675, 1762, 1784, 2413
BseYI	CCCAGC	1 cut(s)	467
BsgI	GTGCAG	2 cut(s)	1222, 1975
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	9 cut(s)	116, 125, 754, 888, 1372, 1602, 1659, 1686, 2205
BshNI	GGYRCC	1 cut(s)	850
BsiHKAI	GWGCWC	2 cut(s)	1291, 1384
BsiHKCI	CYCGRG	1 cut(s)	2430
BsiSI	CCGG	1 cut(s)	2431
BslFI	GGGAC	3 cut(s)	422, 1555, 2037
BslI	CCNNNNNNNGG	2 cut(s)	358, 2329
BsmAI	GTCTC	5 cut(s)	643, 810, 1156, 2152, 2496
BsmBI	CGTCTC	1 cut(s)	2496
BsmFI	GGGAC	3 cut(s)	422, 1555, 2037
BsmI	GAATGC	3 cut(s)	1122, 1571, 2107
BsnI	GGCC	9 cut(s)	116, 125, 754, 888, 1372, 1602, 1659, 1686, 2205
BsoBI	CYCGRG	1 cut(s)	2430
Bsp1286I	GDGCHC	4 cut(s)	853, 1291, 1384, 2274
Bsp1407I	TGTACA	1 cut(s)	401
Bsp1720I	GCTNAGC	1 cut(s)	368
Bsp19I	CCATGG	1 cut(s)	111
BspACI	CCGC	5 cut(s)	107, 130, 710, 1527, 2414
BspANI	GGCC	9 cut(s)	116, 125, 754, 888, 1372, 1602, 1659, 1686, 2205
BspCNI	CTCAG	3 cut(s)	173, 1813, 2044
BspFNI	CGCG	1 cut(s)	132
BspHI	TCATGA	2 cut(s)	181, 439
BspLI	GGNNCC	3 cut(s)	852, 2195, 2271
BspMI	ACCTGC	2 cut(s)	504, 814
BspOI	GCTAGC	1 cut(s)	2337
BspT107I	GGYRCC	1 cut(s)	850
BspTI	CTTAAG	1 cut(s)	373
BsrBI	CCGCTC	1 cut(s)	2416
BsrDI	GCAATG	1 cut(s)	1351
BsrGI	TGTACA	1 cut(s)	401
BsrI	ACTGG	7 cut(s)	744, 1192, 1832, 1890, 2064, 2166, 2237
BssECI	CCNNGG	6 cut(s)	111, 120, 287, 879, 1974, 2430
BssT1I	CCWWGG	2 cut(s)	111, 1974
Bst2UI	CCWGG	2 cut(s)	855, 1688
Bst6I	CTCTTC	2 cut(s)	63, 621
BstAFI	CTTAAG	1 cut(s)	373
BstAPI	GCANNNNNTGC	1 cut(s)	251
BstAUI	TGTACA	1 cut(s)	401
BstBAI	YACGTR	3 cut(s)	620, 1886, 2319
BstC8I	GCNNGC	7 cut(s)	435, 996, 1120, 1364, 1661, 2331, 2335
BstDEI	CTNAG	7 cut(s)	160, 368, 388, 1455, 1821, 2052, 2116
BstDSI	CCRYGG	4 cut(s)	111, 120, 287, 879
BstF5I	GGATG	6 cut(s)	367, 477, 748, 1120, 1696, 2178
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	2 cut(s)	134, 1134
BstMAI	GTCTC	5 cut(s)	643, 810, 1156, 2152, 2496
BstMWI	GCNNNNNNNGC	9 cut(s)	122, 131, 251, 260, 787, 907, 995, 2269, 2432
BstNI	CCWGG	2 cut(s)	855, 1688
BstNSI	RCATGY	3 cut(s)	402, 1142, 2255
BstSCI	CCNGG	4 cut(s)	853, 1686, 2429, 2430
BstSFI	CTRYAG	2 cut(s)	916, 1545
BstSLI	GKGCMC	2 cut(s)	853, 1291
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	7 cut(s)	250, 257, 1223, 1675, 1762, 1784, 2413
BstV2I	GAAGAC	3 cut(s)	1407, 1932, 2466
BstX2I	RGATCY	7 cut(s)	229, 379, 457, 1419, 1530, 1986, 2224
BstYI	RGATCY	7 cut(s)	229, 379, 457, 1419, 1530, 1986, 2224
BsuRI	GGCC	9 cut(s)	116, 125, 754, 888, 1372, 1602, 1659, 1686, 2205
BtgI	CCRYGG	4 cut(s)	111, 120, 287, 879
BtsCI	GGATG	6 cut(s)	367, 477, 748, 1120, 1696, 2178
BtsI	GCAGTG	2 cut(s)	1127, 2112
BtsIMutI	CAGTG	9 cut(s)	563, 681, 1029, 1127, 1291, 1839, 2057, 2112, 2293
BveI	ACCTGC	2 cut(s)	504, 814
Cac8I	GCNNGC	7 cut(s)	435, 996, 1120, 1364, 1661, 2331, 2335
CaiI	CAGNNNCTG	1 cut(s)	1778
CciI	TCATGA	2 cut(s)	181, 439
CfoI	GCGC	2 cut(s)	134, 1134
Cfr13I	GGNCC	5 cut(s)	124, 886, 1247, 1370, 1601
Cfr9I	CCCGGG	1 cut(s)	2430
CsiI	ACCWGGT	1 cut(s)	853
DdeI	CTNAG	7 cut(s)	160, 368, 388, 1455, 1821, 2052, 2116
EaeI	YGGCCR	1 cut(s)	1657
Eam1104I	CTCTTC	2 cut(s)	63, 621
EarI	CTCTTC	2 cut(s)	63, 621
Eco130I	CCWWGG	2 cut(s)	111, 1974
Eco147I	AGGCCT	2 cut(s)	754, 2205
Eco24I	GRGCYC	1 cut(s)	2274
Eco47I	GGWCC	1 cut(s)	1247
Eco57I	CTGAAG	5 cut(s)	1032, 1068, 2148, 2324, 2460
Eco72I	CACGTG	1 cut(s)	620
Eco88I	CYCGRG	1 cut(s)	2430
EcoO109I	RGGNCCY	1 cut(s)	1247
EcoRII	CCWGG	2 cut(s)	853, 1686
EcoT14I	CCWWGG	2 cut(s)	111, 1974
EcoT22I	ATGCAT	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	2274
ErhI	CCWWGG	2 cut(s)	111, 1974
Esp3I	CGTCTC	1 cut(s)	2496
FaqI	GGGAC	3 cut(s)	422, 1555, 2037
FauI	CCCGC	1 cut(s)	1520
FauNDI	CATATG	1 cut(s)	2409
FbaI	TGATCA	2 cut(s)	1177, 1264
FblI	GTMKAC	2 cut(s)	669, 952
Fnu4HI	GCNGC	8 cut(s)	246, 264, 1237, 1664, 1773, 1776, 2414, 2427
FokI	GGATG	6 cut(s)	374, 484, 755, 1127, 1703, 2165
FriOI	GRGCYC	1 cut(s)	2274
Fsp4HI	GCNGC	8 cut(s)	246, 264, 1237, 1664, 1773, 1776, 2414, 2427
FspI	TGCGCA	1 cut(s)	1133
GlaI	GCGC	2 cut(s)	133, 1133
GluI	GCNGC	8 cut(s)	246, 264, 1237, 1664, 1773, 1776, 2414, 2427
GsaI	CCCAGC	1 cut(s)	471
GsuI	CTGGAG	3 cut(s)	1800, 2175, 2220
HaeIII	GGCC	9 cut(s)	116, 125, 754, 888, 1372, 1602, 1659, 1686, 2205
HapII	CCGG	1 cut(s)	2431
HhaI	GCGC	2 cut(s)	134, 1134
Hin6I	GCGC	2 cut(s)	132, 1132
HinP1I	GCGC	2 cut(s)	132, 1132
HincII	GTYRAC	3 cut(s)	349, 1713, 2172
HindII	GTYRAC	3 cut(s)	349, 1713, 2172
HindIII	AAGCTT	1 cut(s)	643
HinfI	GANTC	8 cut(s)	767, 875, 1459, 1733, 1951, 2054, 2123, 2462
HpaI	GTTAAC	1 cut(s)	349
HpaII	CCGG	1 cut(s)	2431
HphI	GGTGA	2 cut(s)	205, 1435
Hpy99I	CGWCG	1 cut(s)	1362
HpyAV	CCTTC	7 cut(s)	90, 707, 913, 2195, 2215, 2348, 2378
HpyCH4IV	ACGT	4 cut(s)	257, 619, 1885, 2318
HpyF10VI	GCNNNNNNNGC	9 cut(s)	122, 131, 251, 260, 787, 907, 995, 2269, 2432
HpyF3I	CTNAG	7 cut(s)	160, 368, 388, 1455, 1821, 2052, 2116
HpySE526I	ACGT	4 cut(s)	257, 619, 1885, 2318
HspAI	GCGC	2 cut(s)	132, 1132
Ksp22I	TGATCA	2 cut(s)	1177, 1264
KspAI	GTTAAC	1 cut(s)	349
LmnI	GCTCC	2 cut(s)	2090, 2269
Lsp1109I	GCAGC	7 cut(s)	250, 257, 1223, 1675, 1762, 1784, 2413
LweI	GCATC	5 cut(s)	241, 558, 1105, 1339, 2102
MabI	ACCWGGT	1 cut(s)	853
MaeII	ACGT	4 cut(s)	257, 619, 1885, 2318
MbiI	CCGCTC	1 cut(s)	2416
MflI	RGATCY	7 cut(s)	229, 379, 457, 1419, 1530, 1986, 2224
MhlI	GDGCHC	4 cut(s)	853, 1291, 1384, 2274
MlsI	TGGCCA	1 cut(s)	1659
MluNI	TGGCCA	1 cut(s)	1659
MlyI	GAGTC	2 cut(s)	2063, 2456
Mox20I	TGGCCA	1 cut(s)	1659
Mph1103I	ATGCAT	1 cut(s)	400
MroXI	GAANNNNTTC	1 cut(s)	1737
MscI	TGGCCA	1 cut(s)	1659
MseI	TTAA	8 cut(s)	75, 348, 374, 419, 522, 1386, 1584, 1707
MslI	CAYNNNNRTG	1 cut(s)	308
Msp20I	TGGCCA	1 cut(s)	1659
MspA1I	CMGCKG	2 cut(s)	248, 1775
MspCI	CTTAAG	1 cut(s)	373
MspI	CCGG	1 cut(s)	2431
MspR9I	CCNGG	4 cut(s)	855, 1688, 2431, 2432
Mva1269I	GAATGC	3 cut(s)	1122, 1571, 2107
MvaI	CCWGG	2 cut(s)	855, 1688
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	9 cut(s)	122, 131, 251, 260, 787, 907, 995, 2269, 2432
NciI	CCSGG	2 cut(s)	2431, 2432
NcoI	CCATGG	1 cut(s)	111
NdeI	CATATG	1 cut(s)	2409
NheI	GCTAGC	1 cut(s)	2333
NlaIV	GGNNCC	3 cut(s)	852, 2195, 2271
NmuCI	GTSAC	3 cut(s)	561, 2055, 2131
NsbI	TGCGCA	1 cut(s)	1133
NsiI	ATGCAT	1 cut(s)	400
NspI	RCATGY	3 cut(s)	402, 1142, 2255
PagI	TCATGA	2 cut(s)	181, 439
PceI	AGGCCT	2 cut(s)	754, 2205
PciI	ACATGT	1 cut(s)	1138
PctI	GAATGC	3 cut(s)	1122, 1571, 2107
PdmI	GAANNNNTTC	1 cut(s)	1737
PfeI	GAWTC	6 cut(s)	767, 875, 1459, 1733, 1951, 2123
PkrI	GCNGC	8 cut(s)	247, 265, 1238, 1665, 1774, 1777, 2415, 2428
PleI	GAGTC	2 cut(s)	2062, 2456
PmaCI	CACGTG	1 cut(s)	620
PmlI	CACGTG	1 cut(s)	620
PpsI	GAGTC	2 cut(s)	2062, 2456
Ppu21I	YACGTR	3 cut(s)	620, 1886, 2319
PpuMI	RGGWCCY	1 cut(s)	1247
PscI	ACATGT	1 cut(s)	1138
PshBI	ATTAAT	1 cut(s)	419
Psp5II	RGGWCCY	1 cut(s)	1247
Psp6I	CCWGG	2 cut(s)	853, 1686
PspCI	CACGTG	1 cut(s)	620
PspFI	CCCAGC	1 cut(s)	467
PspGI	CCWGG	2 cut(s)	853, 1686
PspN4I	GGNNCC	3 cut(s)	852, 2195, 2271
PspPI	GGNCC	5 cut(s)	124, 886, 1247, 1370, 1601
PspPPI	RGGWCCY	1 cut(s)	1247
PstNI	CAGNNNCTG	1 cut(s)	1778
PsuI	RGATCY	7 cut(s)	229, 379, 457, 1419, 1530, 1986, 2224
PvuII	CAGCTG	2 cut(s)	248, 1775
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	8 cut(s)	75, 348, 374, 419, 522, 1386, 1584, 1707
SatI	GCNGC	8 cut(s)	246, 264, 1237, 1664, 1773, 1776, 2414, 2427
Sau96I	GGNCC	5 cut(s)	124, 886, 1247, 1370, 1601
SchI	GAGTC	2 cut(s)	2063, 2456
ScrFI	CCNGG	4 cut(s)	855, 1688, 2431, 2432
SduI	GDGCHC	4 cut(s)	853, 1291, 1384, 2274
SexAI	ACCWGGT	1 cut(s)	853
SfaNI	GCATC	5 cut(s)	241, 558, 1105, 1339, 2102
SfcI	CTRYAG	2 cut(s)	916, 1545
SfiI	GGCCNNNNNGGCC	1 cut(s)	122
SinI	GGWCC	1 cut(s)	1247
SmaI	CCCGGG	1 cut(s)	2432
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	3 cut(s)	373, 646, 1299
SmoI	CTYRAG	3 cut(s)	373, 646, 1299
SpeI	ACTAGT	1 cut(s)	502
SrfI	GCCCGGGC	1 cut(s)	2432
SseBI	AGGCCT	2 cut(s)	754, 2205
SsiI	CCGC	5 cut(s)	107, 130, 710, 1527, 2414
SspI	AATATT	1 cut(s)	595
StuI	AGGCCT	2 cut(s)	754, 2205
StyD4I	CCNGG	4 cut(s)	853, 1686, 2429, 2430
StyI	CCWWGG	2 cut(s)	111, 1974
TaiI	ACGT	4 cut(s)	260, 622, 1888, 2321
TaqI	TCGA	4 cut(s)	330, 1321, 2029, 2500
TatI	WGTACW	7 cut(s)	401, 759, 833, 1338, 1480, 1501, 2297
TauI	GCSGC	1 cut(s)	2416
TfiI	GAWTC	6 cut(s)	767, 875, 1459, 1733, 1951, 2123
Tru1I	TTAA	8 cut(s)	75, 348, 374, 419, 522, 1386, 1584, 1707
Tru9I	TTAA	8 cut(s)	75, 348, 374, 419, 522, 1386, 1584, 1707
TscAI	CASTG	9 cut(s)	570, 681, 1036, 1134, 1291, 1839, 2064, 2112, 2300
TseFI	GTSAC	3 cut(s)	561, 2055, 2131
TseI	GCWGC	7 cut(s)	245, 263, 1236, 1663, 1772, 1775, 2426
Tsp45I	GTSAC	3 cut(s)	561, 2055, 2131
TspDTI	ATGAA	8 cut(s)	170, 651, 759, 895, 1025, 1763, 1860, 2094
TspGWI	ACGGA	8 cut(s)	109, 276, 683, 868, 1144, 1432, 1500, 1648
TspMI	CCCGGG	1 cut(s)	2430
TspRI	CASTG	9 cut(s)	570, 681, 1036, 1134, 1291, 1839, 2064, 2112, 2300
Vha464I	CTTAAG	1 cut(s)	373
VneI	GTGCAC	1 cut(s)	1287
VpaK11BI	GGWCC	1 cut(s)	1247
VspI	ATTAAT	1 cut(s)	419
XapI	RAATTY	2 cut(s)	1257, 1312
XbaI	TCTAGA	3 cut(s)	460, 490, 2002
XceI	RCATGY	3 cut(s)	402, 1142, 2255
XcmI	CCANNNNNNNNNTGG	2 cut(s)	118, 1694
XmaI	CCCGGG	1 cut(s)	2430
XmiI	GTMKAC	2 cut(s)	669, 952
XmnI	GAANNNNTTC	1 cut(s)	1737
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.