AT5G14820
ERF Family

BEST Arabidopsis thaliana protein match is Pentatricopeptide repeat (PPR) superfamily protein (TAIR

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
4792072 .. 4794153
2082 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14820.1

Sequence Viewer

Length: 1797 bp
ATGGCTGCTGCTCCATGGCTCTATCTCTCTAGGAGAAGAAGCTCCACTCAGACTTCATTAAGAAGATTCCTCATTTGCTCTTCTTCATTCGATGCCGATGAATTCATTTCCAGTCAAAGCCGCGTAATCGGCGGGAGAGGAGAAGAGGAAGTACGATTTTCCGGTGCTCTCTTCTCTCGTATGATTCATTCTTCTACTTATCATCCTTACCGTCAAATTCCATTGCCACACTCTGTACAACTGCTTGATGCGAGTCTTGGGTGTAGAGGTTTCTCTAGTGGTAGTTCTAATGTTAGTGATGGATGTGATGAAGAAGTTGAATCTGAATGCGATAATGATGAAGAAACTGGGGTCAGTTGTGTTGAATCAAGTACTAATCCGGAAGAAGTAGAGAGAGTCTGCAAAGTGATTGATGAATTGTTTGCGTTAGATAGAAATATGGAAGCTGTTCTTGATGAAATGAAACTAGATTTATCACATGATCTCATCGTTGAGGTTTTAGAACGTTTTCGACATGCTAGGAAGCCTGCATTTAGGTTCTTCTGTTGGGCTGCAGAGAGACAAGGATTTGCTCATGACTCAAGAACATATAACTCCATGATGAGTATTTTAGCAAAGACTAGACAGTTCGAGACGATGGTTTCGGTACTCGAAGAGATGGGTACGAAAGGTCTATTGACGATGGAGACATTCACTATCGCGATGAAAGCTTTCGCTGCTGCGAAAGAGAGGAAGAAAGCTGTTGGTATCTTTGAGTTGATGAAGAAGTACAAGTTTAAGATTGGTGTTGAAACCATTAATTGCTTGCTTGATAGTCTTGGCAGGGCTAAGCTTGGAAAAGAAGCTCAGGTTCTGTTTGATAAGCTGAAGGAGAGGTTTACACCTAATATGATGACTTACACTGTTCTACTCAATGGTTGGTGCAGGGTGAGGAACTTGATAGAAGCAGCTAGAATCTGGAATGATATGATTGATCACGGATTGAAACCTGACATTGTAGCTCACAACGTAATGCTTGAAGGGTTGTTGAGGAGTATGAAAAAATCAGATGCGATCAAATTGTTCCATGTTATGAAATCCAAGGGACCTTGCCCTAATGTCCGTAGCTATACCATCATGATCCGGGACTTCTGCAAACAGTCGAGCATGGAAACTGCCATTGAGTACTTTGATGACATGGTTGATTCCGGGTTGCAACCTGATGCTGCGGTTTACACGTGTCTGATCACGGGGTTTGGGACTCAGAAGAAGCTGGATACTGTTTACGAACTGCTCAAGGAGATGCAAGAAAAGGGACACCCTCCGGATGGCAAAACGTATAATGCGTTGATCAAACTGATGGCGAACCAGAAAATGCCGGAACATGGCACAAGGATCTACAACAAGATGATCCAGAACGAAATTGAGCCATCGATACACACGTTCAACATGATAATGAAATCTTACTTCGTGGCGAGAAACTATGAGATGGGGAGAGCAGTTTGGGACGAGATGATCAAGAAAGGGATTTGTCCTGACGATAACTCCTACACGGTTTTGATCAGAGGGCTTATAAGTGAAGGGAAGTCGAGAGAGGCATGCAGATACTTGGAGGAGATGCTTGACAAAGGAATGAAAACCCCTTTGATTGATTATAACAAGTTTGCAGCTGATTTCCACAGAGGGGGACAACCGGAGATATTTGAGGAATTGGCACAGAGAGCTAAGTTCTCAGGTAAGTTTGCTGCAGCAGAGATCTTTGCGAGATGGGCTCAGATGACTAGAAGGAGATGCAAACAGAGATTCATGGAAGATTGA

Protein Analysis

598

Amino Acids

68.46

Weight (kDa)

7.51

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 263 - 309 5e-07 PPR repeat family
PPR_2 PF13041 295 - 343 1.1e-10 PPR repeat family
PPR_3 PF13812 318 - 375 3.9e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 330 - 379 1.1e-12 PPR repeat family
PPR_1 PF12854 361 - 394 1.7e-06 PPR repeat
PPR_long PF17177 374 - 535 1.2e-13 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 377 - 412 5.1e-07 PPR repeat family
PPR_3 PF13812 390 - 449 1.1e-10 Pentatricopeptide repeat domain
PPR_2 PF13041 400 - 448 1.2e-11 PPR repeat family
PPR_3 PF13812 424 - 482 5.9e-11 Pentatricopeptide repeat domain
PPR_2 PF13041 439 - 482 8e-08 PPR repeat family
PPR_2 PF13041 470 - 517 2.4e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0010920)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1553, 1635
AccII CGCG 2 cut(s) 123, 701
AccIII TCCGGA 2 cut(s) 379, 1303
AciI CCGC 3 cut(s) 121, 132, 1208
AclI AACGTT 1 cut(s) 505
AclWI GGATC 3 cut(s) 1114, 1382, 1384
AcsI RAATTY 2 cut(s) 101, 216
AcuI CTGAAG 1 cut(s) 887
AcvI CACGTG 1 cut(s) 1218
AfaI GTAC 7 cut(s) 153, 237, 373, 648, 664, 770, 1166
AfiI CCNNNNNNNGG 3 cut(s) 1307, 1364, 1663
AflIII ACRYGT 3 cut(s) 1215, 1217, 1419
AgsI TTSAA 6 cut(s) 320, 365, 791, 985, 1019, 1426
Alw21I GWGCWC 1 cut(s) 169
Alw26I GTCTC 3 cut(s) 553, 626, 680
AlwI GGATC 3 cut(s) 1114, 1382, 1384
AlwNI CAGNNNCTG 1 cut(s) 853
Aor13HI TCCGGA 2 cut(s) 379, 1303
ApoI RAATTY 2 cut(s) 101, 216
ArsI GACNNNNNNTTYG 2 cut(s) 625, 657
AseI ATTAAT 1 cut(s) 798
Asp700I GAANNNNTTC 3 cut(s) 447, 507, 710
AspS9I GGNCC 1 cut(s) 1085
AsuC2I CCSGG 2 cut(s) 1124, 1189
AsuHPI GGTGA 1 cut(s) 940
AvaII GGWCC 1 cut(s) 1085
BaeI ACNNNNGTAYC 2 cut(s) 1406, 1439
BanII GRGCYC 1 cut(s) 1753
BarI GAAGNNNNNNTAC 2 cut(s) 135, 167
BbrPI CACGTG 1 cut(s) 1218
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 8 cut(s) 538, 703, 706, 959, 1192, 1658, 1711, 1739
BciVI GTATCC 1 cut(s) 1249
BclI TGATCA 5 cut(s) 973, 1224, 1329, 1494, 1539
BcnI CCSGG 2 cut(s) 1124, 1189
BcoDI GTCTC 3 cut(s) 553, 626, 680
BfaI CTAG 7 cut(s) 30, 276, 467, 519, 621, 951, 1761
BfmI CTRYAG 2 cut(s) 552, 1725
BfuI GTATCC 1 cut(s) 1249
BglII AGATCT 1 cut(s) 1734
BlpI GCTNAGC 1 cut(s) 828
BmcAI AGTACT 2 cut(s) 373, 1166
Bme1390I CCNGG 2 cut(s) 1124, 1189
Bme18I GGWCC 1 cut(s) 1085
BmgT120I GGNCC 1 cut(s) 1085
BmiI GGNNCC 1 cut(s) 1086
BmrFI CCNGG 2 cut(s) 1124, 1189
BmrI ACTGGG 1 cut(s) 357
BmsI GCATC 7 cut(s) 82, 238, 1039, 1192, 1272, 1587, 1760
BmuI ACTGGG 1 cut(s) 357
BplI GAGNNNNNCTC 2 cut(s) 1735, 1767
Bpu10I CCTNAGC 1 cut(s) 846
Bpu1102I GCTNAGC 1 cut(s) 828
BpuEI CTTGAG 2 cut(s) 565, 1259
BpuMI CCSGG 2 cut(s) 1124, 1189
Bsa29I ATCGAT 1 cut(s) 1412
BsaAI YACGTR 1 cut(s) 1218
BsaJI CCNNGG 2 cut(s) 14, 1080
BsaWI WCCGGW 4 cut(s) 161, 379, 1303, 1672
BsaXI ACNNNNNCTCC 2 cut(s) 1508, 1538
Bsc4I CCNNNNNNNGG 3 cut(s) 1307, 1364, 1663
Bse1I ACTGG 2 cut(s) 111, 352
Bse3DI GCAATG 1 cut(s) 221
BseAI TCCGGA 2 cut(s) 379, 1303
BseCI ATCGAT 1 cut(s) 1412
BseDI CCNNGG 2 cut(s) 14, 1080
BseGI GGATG 3 cut(s) 202, 308, 1312
BseLI CCNNNNNNNGG 3 cut(s) 1307, 1364, 1663
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 5 cut(s) 62, 860, 1256, 1725, 1766
BseNI ACTGG 2 cut(s) 111, 352
BseRI GAGGAG 3 cut(s) 153, 1045, 1607
BseXI GCAGC 8 cut(s) 538, 703, 706, 959, 1192, 1658, 1711, 1739
BsgI GTGCAG 1 cut(s) 943
Bsh1236I CGCG 2 cut(s) 123, 701
BshVI ATCGAT 1 cut(s) 1412
BsiHKAI GWGCWC 1 cut(s) 169
BsiSI CCGG 7 cut(s) 162, 380, 1123, 1188, 1304, 1358, 1673
BslFI GGGAC 6 cut(s) 1098, 1139, 1252, 1308, 1499, 1680
BslI CCNNNNNNNGG 3 cut(s) 1307, 1364, 1663
BsmAI GTCTC 3 cut(s) 553, 626, 680
BsmBI CGTCTC 1 cut(s) 626
BsmFI GGGAC 6 cut(s) 1098, 1139, 1252, 1308, 1499, 1680
BsmI GAATGC 1 cut(s) 332
Bsp1286I GDGCHC 2 cut(s) 169, 1753
Bsp13I TCCGGA 2 cut(s) 379, 1303
Bsp1407I TGTACA 1 cut(s) 235
Bsp1720I GCTNAGC 1 cut(s) 828
Bsp19I CCATGG 1 cut(s) 14
Bsp68I TCGCGA 1 cut(s) 701
BspACI CCGC 3 cut(s) 121, 132, 1208
BspCNI CTCAG 5 cut(s) 61, 859, 1255, 1724, 1765
BspDI ATCGAT 1 cut(s) 1412
BspEI TCCGGA 2 cut(s) 379, 1303
BspFNI CGCG 2 cut(s) 123, 701
BspHI TCATGA 2 cut(s) 574, 1116
BspLI GGNNCC 1 cut(s) 1086
BspMAI CTGCAG 2 cut(s) 556, 1729
BspPI GGATC 3 cut(s) 1114, 1382, 1384
BspQI GCTCTTC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 221
BsrGI TGTACA 1 cut(s) 235
BsrI ACTGG 2 cut(s) 111, 352
BssECI CCNNGG 2 cut(s) 14, 1080
BssT1I CCWWGG 2 cut(s) 14, 1080
Bst4CI ACNGT 6 cut(s) 212, 627, 904, 1140, 1261, 1534
Bst6I CTCTTC 4 cut(s) 85, 138, 176, 648
BstAUI TGTACA 1 cut(s) 235
BstBAI YACGTR 1 cut(s) 1218
BstC8I GCNNGC 3 cut(s) 528, 806, 1579
BstDEI CTNAG 7 cut(s) 48, 828, 846, 1242, 1704, 1711, 1752
BstDSI CCRYGG 1 cut(s) 14
BstF5I GGATG 3 cut(s) 202, 308, 1312
BstFNI CGCG 2 cut(s) 123, 701
BstMAI GTCTC 3 cut(s) 553, 626, 680
BstMWI GCNNNNNNNGC 5 cut(s) 129, 707, 716, 1700, 1748
BstNSI RCATGY 2 cut(s) 518, 1581
BstSCI CCNGG 2 cut(s) 1122, 1187
BstSFI CTRYAG 2 cut(s) 552, 1725
BstUI CGCG 2 cut(s) 123, 701
BstV1I GCAGC 8 cut(s) 538, 703, 706, 959, 1192, 1658, 1711, 1739
BstX2I RGATCY 2 cut(s) 1374, 1734
BstYI RGATCY 2 cut(s) 1374, 1734
Bsu15I ATCGAT 1 cut(s) 1412
BsuI GTATCC 1 cut(s) 1249
BsuTUI ATCGAT 1 cut(s) 1412
BtgI CCRYGG 1 cut(s) 14
BtgZI GCGATG 1 cut(s) 716
BtsCI GGATG 3 cut(s) 202, 308, 1312
BtsIMutI CAGTG 1 cut(s) 900
BtuMI TCGCGA 1 cut(s) 701
Cac8I GCNNGC 3 cut(s) 528, 806, 1579
CaiI CAGNNNCTG 1 cut(s) 853
CciI TCATGA 2 cut(s) 574, 1116
Cfr13I GGNCC 1 cut(s) 1085
ClaI ATCGAT 1 cut(s) 1412
Csp6I GTAC 7 cut(s) 152, 236, 372, 647, 663, 769, 1165
CviQI GTAC 7 cut(s) 152, 236, 372, 647, 663, 769, 1165
DdeI CTNAG 7 cut(s) 48, 828, 846, 1242, 1704, 1711, 1752
Eam1104I CTCTTC 4 cut(s) 85, 138, 176, 648
EarI CTCTTC 4 cut(s) 85, 138, 176, 648
Eco130I CCWWGG 2 cut(s) 14, 1080
Eco24I GRGCYC 1 cut(s) 1753
Eco47I GGWCC 1 cut(s) 1085
Eco57I CTGAAG 1 cut(s) 887
Eco72I CACGTG 1 cut(s) 1218
EcoO109I RGGNCCY 1 cut(s) 1085
EcoRI GAATTC 1 cut(s) 101
EcoT14I CCWWGG 2 cut(s) 14, 1080
EcoT38I GRGCYC 1 cut(s) 1753
ErhI CCWWGG 2 cut(s) 14, 1080
Esp3I CGTCTC 1 cut(s) 626
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FaqI GGGAC 6 cut(s) 1098, 1139, 1252, 1308, 1499, 1680
FauI CCCGC 1 cut(s) 125
FbaI TGATCA 5 cut(s) 973, 1224, 1329, 1494, 1539
FokI GGATG 3 cut(s) 189, 315, 1319
FriOI GRGCYC 1 cut(s) 1753
FspBI CTAG 7 cut(s) 30, 276, 467, 519, 621, 951, 1761
HapII CCGG 7 cut(s) 162, 380, 1123, 1188, 1304, 1358, 1673
HindIII AAGCTT 2 cut(s) 708, 830
HpaII CCGG 7 cut(s) 162, 380, 1123, 1188, 1304, 1358, 1673
HphI GGTGA 1 cut(s) 940
Hpy166II GTNNAC 3 cut(s) 879, 1213, 1264
Hpy188I TCNGA 7 cut(s) 51, 325, 1048, 1224, 1245, 1544, 1755
Hpy8I GTNNAC 3 cut(s) 879, 1213, 1264
HpyAV CCTTC 4 cut(s) 862, 1013, 1553, 1758
HpyCH4III ACNGT 6 cut(s) 212, 627, 904, 1140, 1261, 1534
HpyCH4IV ACGT 5 cut(s) 505, 1008, 1217, 1316, 1421
HpyF10VI GCNNNNNNNGC 5 cut(s) 129, 707, 716, 1700, 1748
HpyF3I CTNAG 7 cut(s) 48, 828, 846, 1242, 1704, 1711, 1752
HpySE526I ACGT 5 cut(s) 505, 1008, 1217, 1316, 1421
Kpn2I TCCGGA 2 cut(s) 379, 1303
Ksp22I TGATCA 5 cut(s) 973, 1224, 1329, 1494, 1539
LguI GCTCTTC 1 cut(s) 85
LmnI GCTCC 2 cut(s) 16, 47
Lsp1109I GCAGC 8 cut(s) 538, 703, 706, 959, 1192, 1658, 1711, 1739
LweI GCATC 7 cut(s) 82, 238, 1039, 1192, 1272, 1587, 1760
MaeI CTAG 7 cut(s) 30, 276, 467, 519, 621, 951, 1761
MaeII ACGT 5 cut(s) 505, 1008, 1217, 1316, 1421
MflI RGATCY 2 cut(s) 1374, 1734
MhlI GDGCHC 2 cut(s) 169, 1753
MluCI AATT 7 cut(s) 101, 216, 416, 799, 1058, 1401, 1688
MlyI GAGTC 4 cut(s) 262, 405, 572, 1234
MroI TCCGGA 2 cut(s) 379, 1303
MroXI GAANNNNTTC 3 cut(s) 447, 507, 710
MseI TTAA 3 cut(s) 59, 777, 798
MslI CAYNNNNRTG 1 cut(s) 1433
MspA1I CMGCKG 1 cut(s) 1649
MspI CCGG 7 cut(s) 162, 380, 1123, 1188, 1304, 1358, 1673
MspR9I CCNGG 2 cut(s) 1124, 1189
Mva1269I GAATGC 1 cut(s) 332
MvnI CGCG 2 cut(s) 123, 701
MwoI GCNNNNNNNGC 5 cut(s) 129, 707, 716, 1700, 1748
NciI CCSGG 2 cut(s) 1124, 1189
NcoI CCATGG 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 1086
NruI TCGCGA 1 cut(s) 701
NspI RCATGY 2 cut(s) 518, 1581
PaeI GCATGC 1 cut(s) 1581
PagI TCATGA 2 cut(s) 574, 1116
PciSI GCTCTTC 1 cut(s) 85
PcsI WCGNNNNNNNCGW 2 cut(s) 1322, 1418
PctI GAATGC 1 cut(s) 332
PdmI GAANNNNTTC 3 cut(s) 447, 507, 710
PfeI GAWTC 7 cut(s) 66, 184, 320, 365, 954, 1184, 1782
PfoI TCCNGGA 1 cut(s) 1122
PleI GAGTC 4 cut(s) 261, 404, 572, 1234
PmaCI CACGTG 1 cut(s) 1218
PmlI CACGTG 1 cut(s) 1218
PpsI GAGTC 4 cut(s) 261, 404, 572, 1234
Ppu21I YACGTR 1 cut(s) 1218
PpuMI RGGWCCY 1 cut(s) 1085
PshBI ATTAAT 1 cut(s) 798
PsiI TTATAA 2 cut(s) 1553, 1635
Psp1406I AACGTT 1 cut(s) 505
Psp5II RGGWCCY 1 cut(s) 1085
PspCI CACGTG 1 cut(s) 1218
PspN4I GGNNCC 1 cut(s) 1086
PspPI GGNCC 1 cut(s) 1085
PspPPI RGGWCCY 1 cut(s) 1085
PstI CTGCAG 2 cut(s) 556, 1729
PstNI CAGNNNCTG 1 cut(s) 853
PsuI RGATCY 2 cut(s) 1374, 1734
PvuII CAGCTG 1 cut(s) 1649
RruI TCGCGA 1 cut(s) 701
RsaI GTAC 7 cut(s) 153, 237, 373, 648, 664, 770, 1166
RsaNI GTAC 7 cut(s) 152, 236, 372, 647, 663, 769, 1165
RseI CAYNNNNRTG 1 cut(s) 1433
SapI GCTCTTC 1 cut(s) 85
SaqAI TTAA 3 cut(s) 59, 777, 798
Sau96I GGNCC 1 cut(s) 1085
ScaI AGTACT 2 cut(s) 373, 1166
SchI GAGTC 4 cut(s) 262, 405, 572, 1234
ScrFI CCNGG 2 cut(s) 1124, 1189
SduI GDGCHC 2 cut(s) 169, 1753
SfaNI GCATC 7 cut(s) 82, 238, 1039, 1192, 1272, 1587, 1760
SfcI CTRYAG 2 cut(s) 552, 1725
SinI GGWCC 1 cut(s) 1085
SmiMI CAYNNNNRTG 1 cut(s) 1433
SmlI CTYRAG 2 cut(s) 580, 1274
SmoI CTYRAG 2 cut(s) 580, 1274
SphI GCATGC 1 cut(s) 1581
Sse9I AATT 7 cut(s) 101, 216, 416, 799, 1058, 1401, 1688
SsiI CCGC 3 cut(s) 121, 132, 1208
SspMI CTAG 7 cut(s) 30, 276, 467, 519, 621, 951, 1761
StyD4I CCNGG 2 cut(s) 1122, 1187
StyI CCWWGG 2 cut(s) 14, 1080
TaaI ACNGT 6 cut(s) 212, 627, 904, 1140, 1261, 1534
TaiI ACGT 5 cut(s) 508, 1011, 1220, 1319, 1424
TaqI TCGA 7 cut(s) 90, 511, 630, 651, 1142, 1412, 1568
TasI AATT 7 cut(s) 101, 216, 416, 799, 1058, 1401, 1688
TatI WGTACW 4 cut(s) 235, 371, 768, 1164
TauI GCSGC 1 cut(s) 123
TfiI GAWTC 7 cut(s) 66, 184, 320, 365, 954, 1184, 1782
Tru1I TTAA 3 cut(s) 59, 777, 798
Tru9I TTAA 3 cut(s) 59, 777, 798
TscAI CASTG 1 cut(s) 907
TspGWI ACGGA 2 cut(s) 993, 1091
TspRI CASTG 1 cut(s) 907
VpaK11BI GGWCC 1 cut(s) 1085
VspI ATTAAT 1 cut(s) 798
XapI RAATTY 2 cut(s) 101, 216
XceI RCATGY 2 cut(s) 518, 1581
XmnI GAANNNNTTC 3 cut(s) 447, 507, 710
XspI CTAG 7 cut(s) 30, 276, 467, 519, 621, 951, 1761
ZrmI AGTACT 2 cut(s) 373, 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.