Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002268.1

Orthogroup ID

OG0010920

Physical Location & Seq

Genomic Coordinates Reverse (-)

1806 .. 3761

Gene Structure 1956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002268.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1956 bp

atgtcagtgtttctaagaagaagcaaattcagccaacagtacccgctgtttctccgccgccactctcagtcagatgtctacctacaccgccgctgccgctatcgctccgccgccgagatgggacgaagcccaggagggcagcaaaaacgaggtcgcggagaacaaggattccgtcctactggtggctctctgcccctgtctggtttgcttaatcctcctcctcatagtaatctccattgttctcatggtcaaattccgtttcttttgccacaccccacttcgctctttactctacaagaaaaaatgctagcctcatcatcatcttcaattatctcaagtttctcaatttcaattaaacccgttggtcatttgctaccaaataggggttatttccataggggcttttctagtgtcacctctgatggtgaggaggaggaggaggaggatggaggggttgaaaatgagggtgctggtgctgacccggaggaggttgatagggtatgtaaggtgattgatgaattgtttgcattggataggaatatggaggcggttctcgatcaatgtggtgttgaattatcccatgatttagttgtggcggtcttgagacgattccaccatgctagaaaacctgcatttcggtttttctgttgggctggggagaagccaggttttgagcatgattccacgacttataactccatgatgagtattttagggaagaccagacagtttgagactatggtatcgctgctcgaagaaatgggagtcaaaggactgctgacaatggaaacttttgtgattgctttcaaagcttttgctgccgccaaagagaggaagaaagctgttggaatctttgagctcatgaagtattacaagttcaaatatggtgtcgataccgtgaattgcttgcttgatactctcggaagggcaaagctagggaaagaaatgcaagttctttttgacaagttgaaagggaggtttaccccaaatttacagacttatgcggtgctgcttgatgggtggtgcagggtgaggaatttaatggaggcggggagggtctggaacgagatgattgataaggggtttaagcctgatattgttacacataatatcatgcttggaggtttgttgaggagtcacaagaggtctgatgctatcaaattgtttgagatcatgaaagccaagggtccatcacctaatgttagaacctatagtattctgattcagaacttctgcaagcaaaaacagatgaaagaagcaatagacttatttgatgaaatgcgtgaatctgggtgccagcctagtgttgtggtttacacaagcttaatcacagggtttggaaatcagaacaagatggatatggttcatggattattgaaagcaatgaagcaagatggttgcactcctgatggggtgacctacaatgccttgatcaaattgatgacgaggcagagaatgccagatgatgcggtcaggatatacaagaagatgattcaaaatggagttgggccatcaatacacacctatgtcatgataatgaagtcttattttcagacaagaaattatgacatgggtcatgcggtatgggatgagatgattgagaagggttgctgcccagatgataacgcatatactgttctcattggaggtcttatatgccagggaagaacgggggaggcctgcaaatatctagaggaaatgatagagaaaggaatgaaaattcctcagcttgacttcaacaagtttgccgccgacttctccagagctgggaaacctgacatacttgtggagatggctcaaaagatgaaggtcgctggtaagtttgaactctccaatgtctttgctaggtgggctgaaatgacgaagaaaaagatgaaaggaagagatcctgacgaaactagtgatcaaggaatctattttacttcccatggatccatacatgatactaggtcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

651

Amino Acids

73.61

Weight (kDa)

8.94

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62470 AT3G62540 AT5G14820
fragaria_vesca	FvH4_5g39420
malus_domestica	MD11G1315100.v1.1
prunus_persica	Prupe.8G271400_v2.0.a1 Prupe.8G271400_v2.0.a1
pyrus_communis	pycom03g23410 pycom11g27530
rosa_chinensis	RchiOBHm_Chr7g0241731
rosa_laevigata	RLG00000000549
rosa_multiflora	Rmu_co8405791.1_g000001 Rmu_sc0002268.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218720
rosa_rugosa	Rorug07G0346800
rosa_samantha	Rh7AG501200 Rh7BG472500 Rh7CG517500 Rh7DG486200
rosa_wichuraiana	Rw7G042360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	693
Acc36I	ACCTGC	1 cut(s)	637
AccB1I	GGYRCC	1 cut(s)	1293
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	1 cut(s)	156
AclWI	GGATC	3 cut(s)	1880, 1926, 1939
AcsI	RAATTY	5 cut(s)	26, 252, 988, 1036, 1719
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	6 cut(s)	182, 200, 383, 487, 831, 1767
AhlI	ACTAGT	1 cut(s)	1898
AjnI	CCWGG	3 cut(s)	130, 664, 1659
AloI	GAACNNNNNNTCC	2 cut(s)	153, 185
AluBI	AGCT	7 cut(s)	812, 842, 859, 934, 1323, 1729, 1766
AluI	AGCT	7 cut(s)	812, 842, 859, 934, 1323, 1729, 1766
Alw21I	GWGCWC	1 cut(s)	861
Alw26I	GTCTC	2 cut(s)	598, 728
AlwI	GGATC	3 cut(s)	1880, 1926, 1939
AoxI	GGCC	2 cut(s)	1508, 1677
ApeKI	GCWGC	6 cut(s)	93, 139, 748, 818, 1009, 1611
ApoI	RAATTY	5 cut(s)	26, 252, 988, 1036, 1719
ArsI	GACNNNNNNTTYG	4 cut(s)	136, 168, 873, 905
AspS9I	GGNCC	2 cut(s)	1187, 1508
AsuC2I	CCSGG	1 cut(s)	482
AsuHPI	GGTGA	6 cut(s)	406, 437, 520, 1042, 1185, 1426
AsuNHI	GCTAGC	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	1187
BaeI	ACNNNNGTAYC	2 cut(s)	726, 759
BamHI	GGATCC	1 cut(s)	1931
BanI	GGYRCC	1 cut(s)	1293
BanII	GRGCYC	1 cut(s)	861
BbsI	GAAGAC	1 cut(s)	725
Bbv12I	GWGCWC	1 cut(s)	861
BbvCI	CCTCAGC	1 cut(s)	1725
BbvI	GCAGC	6 cut(s)	80, 151, 735, 805, 996, 1598
BciT130I	CCWGG	3 cut(s)	132, 666, 1661
BclI	TGATCA	2 cut(s)	1431, 1903
BcnI	CCSGG	1 cut(s)	482
BcoDI	GTCTC	2 cut(s)	598, 728
BcuI	ACTAGT	1 cut(s)	1898
BfaI	CTAG	9 cut(s)	308, 408, 621, 935, 1302, 1691, 1845, 1899, 1947
BfmI	CTRYAG	1 cut(s)	1210
BfuAI	ACCTGC	1 cut(s)	637
Bme1390I	CCNGG	4 cut(s)	132, 482, 666, 1661
Bme18I	GGWCC	1 cut(s)	1187
BmgT120I	GGNCC	2 cut(s)	1187, 1508
BmiI	GGNNCC	3 cut(s)	1188, 1295, 1933
BmrFI	CCNGG	4 cut(s)	132, 482, 666, 1661
BmsI	GCATC	2 cut(s)	1141, 1456
BmtI	GCTAGC	1 cut(s)	311
BoxI	GACNNNNGTC	1 cut(s)	1572
BpiI	GAAGAC	1 cut(s)	725
BpmI	CTGGAG	1 cut(s)	1744
Bpu10I	CCTNAGC	1 cut(s)	1725
BpuEI	CTTGAG	2 cut(s)	319, 622
BpuMI	CCSGG	1 cut(s)	482
BsaJI	CCNNGG	4 cut(s)	130, 1182, 1660, 1927
Bsc4I	CCNNNNNNNGG	6 cut(s)	182, 200, 383, 487, 831, 1767
Bse1I	ACTGG	1 cut(s)	184
Bse3DI	GCAATG	1 cut(s)	1389
BseBI	CCWGG	3 cut(s)	132, 666, 1661
BseDI	CCNNGG	4 cut(s)	130, 1182, 1660, 1927
BseGI	GGATG	2 cut(s)	451, 1594
BseLI	CCNNNNNNNGG	6 cut(s)	182, 200, 383, 487, 831, 1767
BseMI	GCAATG	1 cut(s)	1389
BseMII	CTCAG	2 cut(s)	80, 1739
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	9 cut(s)	207, 210, 443, 446, 449, 452, 455, 500, 1147
BseXI	GCAGC	6 cut(s)	80, 151, 735, 805, 996, 1598
BseYI	CCCAGC	2 cut(s)	653, 1766
BsgI	GTGCAG	1 cut(s)	1045
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	1510, 1679
BshNI	GGYRCC	1 cut(s)	1293
BsiHKAI	GWGCWC	1 cut(s)	861
BsiSI	CCGG	1 cut(s)	482
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	6 cut(s)	182, 200, 383, 487, 831, 1767
BsmAI	GTCTC	2 cut(s)	598, 728
BsmBI	CGTCTC	1 cut(s)	598
BsmFI	GGGAC	1 cut(s)	135
BsmI	GAATGC	1 cut(s)	1461
BsnI	GGCC	2 cut(s)	1510, 1679
Bsp1286I	GDGCHC	1 cut(s)	861
Bsp143I	GATC	6 cut(s)	556, 1170, 1431, 1885, 1903, 1931
Bsp19I	CCATGG	1 cut(s)	1927
BspANI	GGCC	2 cut(s)	1510, 1679
BspCNI	CTCAG	2 cut(s)	79, 1738
BspFNI	CGCG	1 cut(s)	156
BspHI	TCATGA	3 cut(s)	861, 1173, 1530
BspLI	GGNNCC	3 cut(s)	1188, 1295, 1933
BspMI	ACCTGC	1 cut(s)	637
BspOI	GCTAGC	1 cut(s)	311
BspPI	GGATC	3 cut(s)	1880, 1926, 1939
BspT107I	GGYRCC	1 cut(s)	1293
BsrDI	GCAATG	1 cut(s)	1389
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	4 cut(s)	130, 1182, 1660, 1927
BssMI	GATC	6 cut(s)	556, 1170, 1431, 1885, 1903, 1931
BssT1I	CCWWGG	2 cut(s)	1182, 1927
Bst2UI	CCWGG	3 cut(s)	132, 666, 1661
Bst4CI	ACNGT	4 cut(s)	39, 729, 898, 1636
Bst6I	CTCTTC	1 cut(s)	1876
BstAPI	GCANNNNNTGC	1 cut(s)	1456
BstC8I	GCNNGC	5 cut(s)	309, 908, 1238, 1298, 1681
BstDEI	CTNAG	3 cut(s)	14, 66, 1725
BstDSI	CCRYGG	1 cut(s)	1927
BstEII	GGTNACC	1 cut(s)	1414
BstF5I	GGATG	2 cut(s)	451, 1594
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	6 cut(s)	559, 1173, 1434, 1888, 1906, 1934
BstMAI	GTCTC	2 cut(s)	598, 728
BstMBI	GATC	6 cut(s)	556, 1170, 1431, 1885, 1903, 1931
BstMWI	GCNNNNNNNGC	7 cut(s)	30, 96, 102, 809, 818, 1456, 1850
BstNI	CCWGG	3 cut(s)	132, 666, 1661
BstPAI	GACNNNNGTC	1 cut(s)	1572
BstPI	GGTNACC	1 cut(s)	1414
BstSCI	CCNGG	4 cut(s)	130, 480, 664, 1659
BstSFI	CTRYAG	1 cut(s)	1210
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	6 cut(s)	80, 151, 735, 805, 996, 1598
BstV2I	GAAGAC	1 cut(s)	725
BstX2I	RGATCY	2 cut(s)	1885, 1931
BstYI	RGATCY	2 cut(s)	1885, 1931
BsuRI	GGCC	2 cut(s)	1510, 1679
BtgI	CCRYGG	1 cut(s)	1927
BtsCI	GGATG	2 cut(s)	451, 1594
BtsIMutI	CAGTG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	637
Cac8I	GCNNGC	5 cut(s)	309, 908, 1238, 1298, 1681
CciI	TCATGA	3 cut(s)	861, 1173, 1530
Cfr13I	GGNCC	2 cut(s)	1187, 1508
Csp6I	GTAC	1 cut(s)	40
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	3 cut(s)	14, 66, 1725
DpnI	GATC	6 cut(s)	558, 1172, 1433, 1887, 1905, 1933
DpnII	GATC	6 cut(s)	556, 1170, 1431, 1885, 1903, 1931
Eam1104I	CTCTTC	1 cut(s)	1876
EarI	CTCTTC	1 cut(s)	1876
EciI	GGCGGA	2 cut(s)	44, 97
Ecl136II	GAGCTC	1 cut(s)	859
Eco130I	CCWWGG	2 cut(s)	1182, 1927
Eco147I	AGGCCT	1 cut(s)	1679
Eco24I	GRGCYC	1 cut(s)	861
Eco47I	GGWCC	1 cut(s)	1187
Eco53kI	GAGCTC	1 cut(s)	859
Eco91I	GGTNACC	1 cut(s)	1414
EcoICRI	GAGCTC	1 cut(s)	859
EcoO65I	GGTNACC	1 cut(s)	1414
EcoRII	CCWGG	3 cut(s)	130, 664, 1659
EcoT14I	CCWWGG	2 cut(s)	1182, 1927
EcoT38I	GRGCYC	1 cut(s)	861
ErhI	CCWWGG	2 cut(s)	1182, 1927
Esp3I	CGTCTC	1 cut(s)	598
FaqI	GGGAC	1 cut(s)	135
FauI	CCCGC	2 cut(s)	51, 1042
FbaI	TGATCA	2 cut(s)	1431, 1903
FblI	GTMKAC	1 cut(s)	78
FokI	GGATG	2 cut(s)	458, 1601
FriOI	GRGCYC	1 cut(s)	861
FspBI	CTAG	9 cut(s)	308, 408, 621, 935, 1302, 1691, 1845, 1899, 1947
GsaI	CCCAGC	2 cut(s)	657, 1770
GsuI	CTGGAG	1 cut(s)	1744
HaeIII	GGCC	2 cut(s)	1510, 1679
HapII	CCGG	1 cut(s)	482
HindIII	AAGCTT	2 cut(s)	810, 1321
HpaII	CCGG	1 cut(s)	482
HphI	GGTGA	6 cut(s)	406, 437, 520, 1042, 1185, 1426
Hpy166II	GTNNAC	3 cut(s)	79, 981, 1315
Hpy188I	TCNGA	8 cut(s)	73, 421, 923, 1150, 1221, 1227, 1347, 1554
Hpy8I	GTNNAC	3 cut(s)	79, 981, 1315
HpyAV	CCTTC	3 cut(s)	918, 1597, 1801
HpyCH4III	ACNGT	4 cut(s)	39, 729, 898, 1636
HpyCH4V	TGCA	7 cut(s)	527, 632, 949, 1026, 1236, 1401, 1683
HpyF10VI	GCNNNNNNNGC	7 cut(s)	30, 96, 102, 809, 818, 1456, 1850
HpyF3I	CTNAG	3 cut(s)	14, 66, 1725
Ksp22I	TGATCA	2 cut(s)	1431, 1903
Kzo9I	GATC	6 cut(s)	556, 1170, 1431, 1885, 1903, 1931
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	6 cut(s)	80, 151, 735, 805, 996, 1598
LweI	GCATC	2 cut(s)	1141, 1456
MaeI	CTAG	9 cut(s)	308, 408, 621, 935, 1302, 1691, 1845, 1899, 1947
MaeIII	GTNAC	4 cut(s)	412, 1099, 1136, 1414
MalI	GATC	6 cut(s)	558, 1172, 1433, 1887, 1905, 1933
MboI	GATC	6 cut(s)	556, 1170, 1431, 1885, 1903, 1931
MboII	GAAGA	9 cut(s)	30, 315, 730, 767, 847, 1498, 1677, 1876, 1893
MflI	RGATCY	2 cut(s)	1885, 1931
MhlI	GDGCHC	1 cut(s)	861
MlyI	GAGTC	2 cut(s)	774, 1144
MmeI	TCCRAC	1 cut(s)	826
MseI	TTAA	6 cut(s)	210, 354, 1040, 1086, 1325, 1954
MslI	CAYNNNNRTG	3 cut(s)	1524, 1535, 1784
MspA1I	CMGCKG	2 cut(s)	46, 93
MspI	CCGG	1 cut(s)	482
MspR9I	CCNGG	4 cut(s)	132, 482, 666, 1661
Mva1269I	GAATGC	1 cut(s)	1461
MvaI	CCWGG	3 cut(s)	132, 666, 1661
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	7 cut(s)	30, 96, 102, 809, 818, 1456, 1850
NciI	CCSGG	1 cut(s)	482
NcoI	CCATGG	1 cut(s)	1927
NdeII	GATC	6 cut(s)	556, 1170, 1431, 1885, 1903, 1931
NheI	GCTAGC	1 cut(s)	307
NlaIV	GGNNCC	3 cut(s)	1188, 1295, 1933
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	3 cut(s)	412, 1136, 1414
PagI	TCATGA	3 cut(s)	861, 1173, 1530
PceI	AGGCCT	1 cut(s)	1679
PctI	GAATGC	1 cut(s)	1461
PfeI	GAWTC	8 cut(s)	168, 609, 680, 849, 1222, 1286, 1492, 1911
PleI	GAGTC	2 cut(s)	773, 1143
PpsI	GAGTC	2 cut(s)	773, 1143
PshAI	GACNNNNGTC	1 cut(s)	1572
PsiI	TTATAA	1 cut(s)	693
Psp124BI	GAGCTC	1 cut(s)	861
Psp6I	CCWGG	3 cut(s)	130, 664, 1659
PspEI	GGTNACC	1 cut(s)	1414
PspFI	CCCAGC	2 cut(s)	653, 1766
PspGI	CCWGG	3 cut(s)	130, 664, 1659
PspN4I	GGNNCC	3 cut(s)	1188, 1295, 1933
PspPI	GGNCC	2 cut(s)	1187, 1508
PsrI	GAACNNNNNNTAC	2 cut(s)	860, 892
PsuI	RGATCY	2 cut(s)	1885, 1931
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	3 cut(s)	1524, 1535, 1784
SacI	GAGCTC	1 cut(s)	861
SaqAI	TTAA	6 cut(s)	210, 354, 1040, 1086, 1325, 1954
Sau3AI	GATC	6 cut(s)	556, 1170, 1431, 1885, 1903, 1931
Sau96I	GGNCC	2 cut(s)	1187, 1508
SchI	GAGTC	2 cut(s)	774, 1144
ScrFI	CCNGG	4 cut(s)	132, 482, 666, 1661
SduI	GDGCHC	1 cut(s)	861
SfaNI	GCATC	2 cut(s)	1141, 1456
SfcI	CTRYAG	1 cut(s)	1210
SinI	GGWCC	1 cut(s)	1187
SmiMI	CAYNNNNRTG	3 cut(s)	1524, 1535, 1784
SmlI	CTYRAG	2 cut(s)	334, 601
SmoI	CTYRAG	2 cut(s)	334, 601
SpeI	ACTAGT	1 cut(s)	1898
SseBI	AGGCCT	1 cut(s)	1679
SspMI	CTAG	9 cut(s)	308, 408, 621, 935, 1302, 1691, 1845, 1899, 1947
SstI	GAGCTC	1 cut(s)	861
StuI	AGGCCT	1 cut(s)	1679
StyD4I	CCNGG	4 cut(s)	130, 480, 664, 1659
StyI	CCWWGG	2 cut(s)	1182, 1927
TaaI	ACNGT	4 cut(s)	39, 729, 898, 1636
TaqI	TCGA	3 cut(s)	555, 753, 891
TauI	GCSGC	6 cut(s)	60, 93, 99, 113, 824, 1751
TfiI	GAWTC	8 cut(s)	168, 609, 680, 849, 1222, 1286, 1492, 1911
Tru1I	TTAA	6 cut(s)	210, 354, 1040, 1086, 1325, 1954
Tru9I	TTAA	6 cut(s)	210, 354, 1040, 1086, 1325, 1954
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	3 cut(s)	412, 1136, 1414
TseI	GCWGC	6 cut(s)	93, 139, 748, 818, 1009, 1611
Tsp45I	GTSAC	3 cut(s)	412, 1136, 1414
TspGWI	ACGGA	2 cut(s)	161, 246
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	1187
XapI	RAATTY	5 cut(s)	26, 252, 988, 1036, 1719
XbaI	TCTAGA	1 cut(s)	1690
XcmI	CCANNNNNNNNNTGG	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	9 cut(s)	308, 408, 621, 935, 1302, 1691, 1845, 1899, 1947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.